Wall clock time and date at job start Mon Mar 30 2020 04:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36624 * 120.02947 * 2 1 4 4 C 1.39361 * 120.05829 * 180.27228 * 3 2 1 5 5 N 1.38748 * 119.93842 * 179.71940 * 4 3 2 6 6 C 1.36765 * 120.00195 * 179.73000 * 5 4 3 7 7 H 1.08007 * 119.99783 * 336.90200 * 6 5 4 8 8 C 1.38885 * 120.00357 * 156.89624 * 6 5 4 9 9 N 1.31515 * 119.99724 * 351.07504 * 8 6 5 10 10 Si 1.86800 * 120.00211 * 171.06678 * 8 6 5 11 11 H 1.48500 * 109.47224 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46953 * 120.00542 * 10 8 6 13 13 H 1.48494 * 109.47360 * 240.00238 * 10 8 6 14 14 C 1.46501 * 119.99527 * 359.73257 * 5 4 3 15 15 C 1.47192 * 109.47287 * 277.47785 * 14 5 4 16 16 N 5.07081 * 105.10614 * 329.85732 * 2 1 3 17 17 C 1.39397 * 120.12309 * 359.45345 * 4 3 2 18 18 C 1.36579 * 120.06081 * 0.27007 * 17 4 3 19 19 C 1.39872 * 120.03136 * 179.72689 * 2 1 3 20 20 C 1.47385 * 120.05962 * 0.02562 * 19 2 1 21 21 O 1.21528 * 120.00251 * 352.76664 * 20 19 2 22 22 O 1.34772 * 119.99928 * 172.76827 * 20 19 2 23 23 H 1.08997 * 109.46746 * 264.14908 * 1 2 3 24 24 H 1.09007 * 109.46828 * 24.14564 * 1 2 3 25 25 H 1.08991 * 109.47199 * 144.13996 * 1 2 3 26 26 H 1.08001 * 119.97311 * 359.97438 * 3 2 1 27 27 H 0.97004 * 120.00026 * 179.97438 * 9 8 6 28 28 H 1.09001 * 109.46814 * 157.48131 * 14 5 4 29 29 H 1.08997 * 109.47578 * 37.48335 * 14 5 4 30 30 H 1.08004 * 119.96689 * 180.29044 * 17 4 3 31 31 H 1.08009 * 120.03021 * 179.97438 * 18 17 4 32 32 H 0.96707 * 116.99625 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1908 1.1828 0.0000 4 6 3.5844 1.1836 -0.0057 5 7 4.2762 2.3862 -0.0116 6 6 5.6438 2.3885 -0.0117 7 1 6.1852 1.5307 0.3595 8 6 6.3365 3.4936 -0.4890 9 7 5.6893 4.4615 -1.1005 10 14 8.1873 3.6052 -0.2624 11 1 8.6726 2.3965 0.4509 12 1 8.8444 3.6925 -1.5913 13 1 8.5166 4.8153 0.5329 14 6 3.5415 3.6537 -0.0177 15 6 3.1391 3.9810 -1.3952 16 7 2.8285 4.2336 -2.4583 17 6 4.2846 -0.0218 0.0000 18 6 3.6061 -1.2071 0.0057 19 6 2.2071 -1.2109 0.0058 20 6 1.4722 -2.4885 0.0113 21 8 0.2641 -2.4940 0.1434 22 8 2.1399 -3.6506 -0.1301 23 1 -0.3633 -0.1048 1.0223 24 1 -0.3633 0.9378 -0.4204 25 1 -0.3633 -0.8328 -0.6020 26 1 1.6508 2.1182 -0.0004 27 1 6.1730 5.2335 -1.4336 28 1 4.1807 4.4460 0.3720 29 1 2.6539 3.5623 0.6081 30 1 5.3646 -0.0183 0.0003 31 1 4.1492 -2.1408 0.0098 32 1 1.6148 -4.4626 -0.1199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050576019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:30 Heat of formation + Delta-G solvation = -24.553114 kcal Electronic energy + Delta-G solvation = -18812.947146 eV Core-core repulsion = 15738.998766 eV Total energy + Delta-G solvation = -3073.948379 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.89814 -38.76141 -36.59292 -35.55099 -34.83230 -32.54347 -31.84727 -29.39843 -28.09794 -26.31993 -24.79723 -22.32958 -21.32063 -20.07438 -17.90803 -17.47569 -16.94034 -16.70352 -16.08781 -15.14060 -14.83679 -14.44923 -14.05434 -13.52117 -13.28581 -13.06286 -12.61613 -12.56182 -12.39025 -12.09065 -11.75696 -11.57816 -11.50269 -11.36951 -11.29202 -10.99250 -10.89891 -10.65407 -10.54268 -10.04739 -9.79649 -9.53340 -8.95343 -8.13977 -7.07033 -6.79446 -4.21180 1.62300 2.31285 2.93242 3.01597 3.06152 3.27917 3.50486 3.71752 3.83654 3.95764 4.45901 4.69395 4.74649 5.15688 5.49611 5.54479 5.84246 5.92755 6.06031 6.15320 6.22400 6.32916 6.39166 6.48181 6.55600 6.79544 6.94472 7.02975 7.11241 7.20951 7.35279 7.44919 7.77560 8.19396 8.52134 8.66124 8.78739 9.06080 10.20615 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.006082 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.687014 B = 4602.675673 C = 5461.828360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.039 3.961 3 C -0.249 4.249 4 C 0.236 3.764 5 N -0.419 5.419 6 C -0.313 4.313 7 H 0.111 0.889 8 C 0.032 3.968 9 N -0.870 5.870 10 Si 0.938 3.062 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.276 1.276 14 C 0.224 3.776 15 C 0.248 3.752 16 N -0.472 5.472 17 C -0.222 4.222 18 C -0.006 4.006 19 C -0.262 4.262 20 C 0.529 3.471 21 O -0.545 6.545 22 O -0.524 6.524 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.279 0.721 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 -5.511 5.130 7.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.037 3.963 3 C -0.272 4.272 4 C 0.115 3.885 5 N -0.102 5.102 6 C -0.441 4.441 7 H 0.129 0.871 8 C -0.174 4.174 9 N -0.506 5.506 10 Si 0.763 3.237 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.202 1.202 14 C 0.097 3.903 15 C -0.071 4.071 16 N -0.151 5.151 17 C -0.245 4.245 18 C -0.026 4.026 19 C -0.267 4.267 20 C 0.380 3.620 21 O -0.439 6.439 22 O -0.335 6.335 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.133 0.867 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.104 0.896 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.124 -4.220 3.488 5.872 hybrid contribution 0.850 -0.387 0.302 0.981 sum -1.274 -4.606 3.790 6.099 Atomic orbital electron populations 1.21037 0.91553 1.02145 1.02652 1.19125 0.95101 0.91047 0.90987 1.19936 0.92060 0.97242 1.18004 1.18218 0.90802 0.86577 0.92874 1.42608 1.05297 1.00733 1.61556 1.19891 0.79553 1.04609 1.40008 0.87124 1.25489 1.01543 0.95806 0.94568 1.69814 1.37195 1.09539 1.34008 0.85657 0.80672 0.78890 0.78434 1.18858 1.20437 1.20161 1.18850 0.96570 0.89378 0.85462 1.29220 0.89980 0.92466 0.95412 1.80909 1.13185 1.09245 1.11796 1.20234 0.99887 0.90407 1.13932 1.20642 0.92430 0.97390 0.92110 1.18079 0.93107 0.88523 1.27018 1.21073 0.85290 0.83882 0.71801 1.90754 1.15867 1.87631 1.49615 1.84636 1.45628 1.17141 1.86048 0.91335 0.93002 0.89655 0.86729 0.90997 0.84732 0.89639 0.85678 0.86372 0.74452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.72 36.01 0.31 -1.65 16 2 C 0.04 0.74 5.88 -104.59 -0.62 0.12 16 3 C -0.25 -4.75 8.61 -39.75 -0.34 -5.09 16 4 C 0.24 4.80 6.45 -83.88 -0.54 4.26 16 5 N -0.42 -8.80 2.69 -116.23 -0.31 -9.11 16 6 C -0.31 -6.86 9.04 -15.11 -0.14 -6.99 16 7 H 0.11 2.33 6.13 -52.48 -0.32 2.01 16 8 C 0.03 0.69 5.13 -17.45 -0.09 0.60 16 9 N -0.87 -20.12 9.08 55.49 0.50 -19.61 16 10 Si 0.94 17.54 29.56 -169.99 -5.03 12.51 16 11 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 12 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 14 C 0.22 4.29 4.79 -6.83 -0.03 4.26 16 15 C 0.25 5.39 13.24 -20.76 -0.27 5.11 16 16 N -0.47 -11.18 18.54 42.15 0.78 -10.39 16 17 C -0.22 -4.29 9.20 -39.75 -0.37 -4.66 16 18 C -0.01 -0.10 9.56 -39.56 -0.38 -0.48 16 19 C -0.26 -4.88 5.88 -104.94 -0.62 -5.50 16 20 C 0.53 9.18 8.18 34.45 0.28 9.46 16 21 O -0.55 -10.20 14.13 -19.29 -0.27 -10.47 16 22 O -0.52 -7.28 12.69 -40.69 -0.52 -7.80 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.78 8.04 -51.92 -0.42 0.37 16 25 H 0.08 1.50 5.84 -51.93 -0.30 1.20 16 26 H 0.11 2.03 6.09 -52.49 -0.32 1.71 16 27 H 0.28 6.28 8.31 -40.82 -0.34 5.94 16 28 H 0.14 2.61 6.34 -51.93 -0.33 2.28 16 29 H 0.09 1.34 6.59 -51.93 -0.34 1.00 16 30 H 0.13 2.36 6.15 -52.48 -0.32 2.03 16 31 H 0.12 1.87 7.62 -52.48 -0.40 1.47 16 32 H 0.40 3.55 9.11 45.56 0.42 3.96 16 LS Contribution 281.06 15.07 4.24 4.24 Total: -1.00 -27.45 281.06 -5.30 -32.75 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -1.90 Total: 8.45 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.80 Total: -0.55 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.97 Total: -39.12 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.79 Total: -18.27 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.45 -5.30 -32.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050576019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.194 kcal (2) G-P(sol) polarization free energy of solvation -27.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds