Wall clock time and date at job start Mon Mar 30 2020 04:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36624 * 120.02947 * 2 1 4 4 C 1.39361 * 120.05829 * 180.27228 * 3 2 1 5 5 N 1.38748 * 119.93842 * 179.71940 * 4 3 2 6 6 C 1.36765 * 120.00195 * 179.73000 * 5 4 3 7 7 H 1.08007 * 119.99783 * 336.90200 * 6 5 4 8 8 C 1.38885 * 120.00357 * 156.89624 * 6 5 4 9 9 N 1.31515 * 119.99724 * 351.07504 * 8 6 5 10 10 Si 1.86800 * 120.00211 * 171.06678 * 8 6 5 11 11 H 1.48500 * 109.47224 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46953 * 120.00542 * 10 8 6 13 13 H 1.48494 * 109.47360 * 240.00238 * 10 8 6 14 14 C 1.46501 * 119.99527 * 359.73257 * 5 4 3 15 15 C 1.47192 * 109.47287 * 277.47785 * 14 5 4 16 16 N 5.07081 * 105.10614 * 329.85732 * 2 1 3 17 17 C 1.39397 * 120.12309 * 359.45345 * 4 3 2 18 18 C 1.36579 * 120.06081 * 0.27007 * 17 4 3 19 19 C 1.39872 * 120.03136 * 179.72689 * 2 1 3 20 20 C 1.47385 * 120.05962 * 0.02562 * 19 2 1 21 21 O 1.21528 * 120.00251 * 352.76664 * 20 19 2 22 22 O 1.34772 * 119.99928 * 172.76827 * 20 19 2 23 23 H 1.08997 * 109.46746 * 264.14908 * 1 2 3 24 24 H 1.09007 * 109.46828 * 24.14564 * 1 2 3 25 25 H 1.08991 * 109.47199 * 144.13996 * 1 2 3 26 26 H 1.08001 * 119.97311 * 359.97438 * 3 2 1 27 27 H 0.97004 * 120.00026 * 179.97438 * 9 8 6 28 28 H 1.09001 * 109.46814 * 157.48131 * 14 5 4 29 29 H 1.08997 * 109.47578 * 37.48335 * 14 5 4 30 30 H 1.08004 * 119.96689 * 180.29044 * 17 4 3 31 31 H 1.08009 * 120.03021 * 179.97438 * 18 17 4 32 32 H 0.96707 * 116.99625 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1908 1.1828 0.0000 4 6 3.5844 1.1836 -0.0057 5 7 4.2762 2.3862 -0.0116 6 6 5.6438 2.3885 -0.0117 7 1 6.1852 1.5307 0.3595 8 6 6.3365 3.4936 -0.4890 9 7 5.6893 4.4615 -1.1005 10 14 8.1873 3.6052 -0.2624 11 1 8.6726 2.3965 0.4509 12 1 8.8444 3.6925 -1.5913 13 1 8.5166 4.8153 0.5329 14 6 3.5415 3.6537 -0.0177 15 6 3.1391 3.9810 -1.3952 16 7 2.8285 4.2336 -2.4583 17 6 4.2846 -0.0218 0.0000 18 6 3.6061 -1.2071 0.0057 19 6 2.2071 -1.2109 0.0058 20 6 1.4722 -2.4885 0.0113 21 8 0.2641 -2.4940 0.1434 22 8 2.1399 -3.6506 -0.1301 23 1 -0.3633 -0.1048 1.0223 24 1 -0.3633 0.9378 -0.4204 25 1 -0.3633 -0.8328 -0.6020 26 1 1.6508 2.1182 -0.0004 27 1 6.1730 5.2335 -1.4336 28 1 4.1807 4.4460 0.3720 29 1 2.6539 3.5623 0.6081 30 1 5.3646 -0.0183 0.0003 31 1 4.1492 -2.1408 0.0098 32 1 1.6148 -4.4626 -0.1199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050576019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:30 Heat of formation + Delta-G solvation = -39.632039 kcal Electronic energy + Delta-G solvation = -18813.601017 eV Core-core repulsion = 15738.998766 eV Total energy + Delta-G solvation = -3074.602251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.29641 -40.20736 -38.08931 -36.88185 -36.50492 -34.12120 -33.29641 -30.90078 -29.63590 -27.74262 -26.34915 -23.75609 -22.76757 -21.53525 -19.47577 -18.82320 -18.47920 -18.15128 -17.55635 -16.53762 -16.33301 -15.94316 -15.49567 -15.04170 -14.70976 -14.53066 -14.08669 -14.05654 -13.86682 -13.64896 -13.28802 -13.08496 -13.02841 -12.87404 -12.79870 -12.45417 -12.26311 -12.18356 -12.03760 -11.54227 -11.32549 -10.92052 -10.54285 -9.59834 -8.63621 -8.39872 -5.87496 0.17263 0.82700 1.45986 1.49862 1.60841 1.81826 1.93628 2.22944 2.32486 2.49373 2.89592 3.14548 3.19383 3.60592 4.06195 4.15015 4.43706 4.56090 4.64786 4.75364 4.84261 4.91417 4.97229 5.09640 5.11016 5.34882 5.40281 5.62604 5.64600 5.87200 5.89506 5.93106 6.26307 6.60021 6.98216 7.21752 7.29520 7.47374 8.58382 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.006082 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.687014 B = 4602.675673 C = 5461.828360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.028 3.972 3 C -0.252 4.252 4 C 0.226 3.774 5 N -0.439 5.439 6 C -0.323 4.323 7 H 0.113 0.887 8 C -0.006 4.006 9 N -0.901 5.901 10 Si 0.994 3.006 11 H -0.256 1.256 12 H -0.293 1.293 13 H -0.275 1.275 14 C 0.227 3.773 15 C 0.262 3.738 16 N -0.515 5.515 17 C -0.235 4.235 18 C 0.000 4.000 19 C -0.269 4.269 20 C 0.535 3.465 21 O -0.559 6.559 22 O -0.514 6.514 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.273 0.727 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 -7.133 6.004 9.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.026 3.974 3 C -0.276 4.276 4 C 0.107 3.893 5 N -0.124 5.124 6 C -0.450 4.450 7 H 0.131 0.869 8 C -0.207 4.207 9 N -0.538 5.538 10 Si 0.819 3.181 11 H -0.179 1.179 12 H -0.220 1.220 13 H -0.200 1.200 14 C 0.100 3.900 15 C -0.056 4.056 16 N -0.195 5.195 17 C -0.258 4.258 18 C -0.019 4.019 19 C -0.274 4.274 20 C 0.385 3.615 21 O -0.454 6.454 22 O -0.327 6.327 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.144 0.856 27 H 0.084 0.916 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -2.463 -5.909 4.381 7.758 hybrid contribution 0.814 -0.161 0.051 0.831 sum -1.649 -6.070 4.433 7.695 Atomic orbital electron populations 1.21001 0.90137 1.02530 1.03108 1.19450 0.96295 0.91059 0.90556 1.20107 0.91729 0.98044 1.17672 1.18530 0.91473 0.86834 0.92423 1.42651 1.05137 1.01189 1.63434 1.20080 0.80336 1.04725 1.39902 0.86915 1.26102 1.04473 0.95658 0.94497 1.69911 1.37998 1.10041 1.35816 0.84808 0.76883 0.79024 0.77406 1.17937 1.21986 1.19994 1.19047 0.97738 0.88865 0.84359 1.29835 0.88726 0.91235 0.95798 1.80895 1.14850 1.10668 1.13093 1.20396 1.00179 0.90749 1.14444 1.20863 0.92369 0.97873 0.90824 1.18431 0.93621 0.89512 1.25800 1.20814 0.84868 0.84436 0.71398 1.90760 1.16448 1.88087 1.50087 1.84561 1.45621 1.17386 1.85179 0.90466 0.91668 0.90484 0.85634 0.91642 0.85123 0.86086 0.85590 0.84079 0.71565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.47 8.72 71.24 0.62 -2.85 16 2 C 0.03 1.00 5.88 -19.85 -0.12 0.88 16 3 C -0.25 -9.21 8.61 22.16 0.19 -9.02 16 4 C 0.23 8.92 6.45 38.60 0.25 9.17 16 5 N -0.44 -18.17 2.69 -521.65 -1.41 -19.58 16 6 C -0.32 -14.06 9.04 84.08 0.76 -13.30 16 7 H 0.11 4.70 6.13 -2.91 -0.02 4.68 16 8 C -0.01 -0.25 5.13 84.90 0.44 0.19 16 9 N -0.90 -42.18 9.08 21.66 0.20 -41.98 16 10 Si 0.99 36.05 29.56 68.60 2.03 38.07 16 11 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 12 H -0.29 -11.22 7.11 99.48 0.71 -10.51 16 13 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 14 C 0.23 8.55 4.79 84.57 0.41 8.95 16 15 C 0.26 11.38 13.24 89.44 1.18 12.57 16 16 N -0.51 -24.59 18.54 20.00 0.37 -24.21 16 17 C -0.23 -8.76 9.20 22.16 0.20 -8.56 16 18 C 0.00 0.02 9.56 22.29 0.21 0.23 16 19 C -0.27 -9.36 5.88 -20.07 -0.12 -9.48 16 20 C 0.53 17.00 8.18 70.23 0.57 17.57 16 21 O -0.56 -19.44 14.13 19.75 0.28 -19.17 16 22 O -0.51 -12.42 12.69 -56.83 -0.72 -13.14 16 23 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.06 1.83 8.04 -2.38 -0.02 1.81 16 25 H 0.08 2.55 5.84 -2.39 -0.01 2.54 16 26 H 0.13 4.22 6.09 -2.91 -0.02 4.20 16 27 H 0.27 12.58 8.31 -92.71 -0.77 11.81 16 28 H 0.13 5.08 6.34 -2.39 -0.02 5.06 16 29 H 0.12 3.60 6.59 -2.39 -0.02 3.59 16 30 H 0.13 4.63 6.15 -2.91 -0.02 4.61 16 31 H 0.14 4.03 7.62 -2.91 -0.02 4.01 16 32 H 0.42 5.87 9.11 -74.05 -0.67 5.19 16 Total: -1.00 -57.41 281.06 5.87 -51.55 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.52 Total: 22.11 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 4.60 Total: 6.36 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -0.84 Total: -85.77 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.44 Total: -32.31 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.07 kcal Total: -57.41 5.87 -51.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050576019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.915 kcal (2) G-P(sol) polarization free energy of solvation -57.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds