Wall clock time and date at job start Mon Mar 30 2020 04:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39024 * 120.00281 * 2 1 4 4 C 1.39076 * 119.64423 * 359.97438 * 3 2 1 5 5 C 1.39594 * 118.92202 * 180.23154 * 4 3 2 6 6 C 1.48009 * 120.88896 * 179.72401 * 5 4 3 7 7 O 1.21559 * 120.00152 * 326.22262 * 6 5 4 8 8 N 1.34779 * 119.99993 * 146.21663 * 6 5 4 9 9 C 1.36795 * 119.99677 * 4.69914 * 8 6 5 10 10 H 1.07997 * 119.99929 * 317.51020 * 9 8 6 11 11 C 1.39096 * 120.00063 * 137.52005 * 9 8 6 12 12 N 1.31327 * 120.00238 * 163.74825 * 11 9 8 13 13 Si 1.86800 * 120.00212 * 343.74636 * 11 9 8 14 14 H 1.48496 * 109.47362 * 94.64396 * 13 11 9 15 15 H 1.48498 * 109.47177 * 214.64789 * 13 11 9 16 16 H 1.48502 * 109.46887 * 334.64616 * 13 11 9 17 17 C 1.46501 * 119.99939 * 184.69317 * 8 6 5 18 18 C 1.47195 * 109.47206 * 84.31768 * 17 8 6 19 19 N 7.85063 * 76.20330 * 20.90979 * 2 1 3 20 20 C 1.40100 * 118.22080 * 359.50941 * 5 4 3 21 21 C 1.37911 * 119.17061 * 0.49087 * 20 5 4 22 22 N 1.31945 * 121.00479 * 359.75036 * 21 20 5 23 23 H 1.09009 * 109.46604 * 59.99826 * 1 2 3 24 24 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47009 * 300.00823 * 1 2 3 26 26 H 0.97000 * 119.99298 * 179.97438 * 2 1 3 27 27 H 1.08000 * 120.53579 * 359.95469 * 4 3 2 28 28 H 0.96998 * 120.00166 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.46896 * 204.32081 * 17 8 6 30 30 H 1.09006 * 109.47112 * 324.31316 * 17 8 6 31 31 H 1.08003 * 120.41995 * 180.23417 * 20 5 4 32 32 H 1.08000 * 119.49816 * 179.77024 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2039 0.0000 4 6 1.4574 2.4041 -0.0005 5 6 2.1706 3.6041 -0.0055 6 6 1.4670 4.9062 -0.0124 7 8 0.4088 5.0221 -0.5993 8 7 1.9994 5.9633 0.6322 9 6 3.2346 5.8603 1.2110 10 1 3.4987 4.9718 1.7653 11 6 4.1503 6.8998 1.0856 12 7 5.1923 6.9567 1.8829 13 14 3.8979 8.2149 -0.2168 14 1 3.1887 9.3743 0.3814 15 1 5.2170 8.6560 -0.7368 16 1 3.0874 7.6596 -1.3303 17 6 1.2553 7.2227 0.7130 18 6 0.3165 7.1662 1.8452 19 7 -0.4072 7.1220 2.7210 20 6 3.5703 3.5429 0.0009 21 6 4.1892 2.3105 0.0014 22 7 3.4837 1.1955 0.0009 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5140 0.8899 26 1 1.9499 -0.8401 0.0004 27 1 0.3774 2.4075 -0.0017 28 1 5.8311 7.6814 1.7952 29 1 1.9524 8.0477 0.8597 30 1 0.7000 7.3766 -0.2123 31 1 4.1573 4.4495 0.0012 32 1 5.2679 2.2572 0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050712189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:49 Heat of formation + Delta-G solvation = 59.769311 kcal Electronic energy + Delta-G solvation = -18986.954671 eV Core-core repulsion = 15948.955537 eV Total energy + Delta-G solvation = -3037.999134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09653 -38.75411 -36.11698 -35.47723 -34.94841 -32.26642 -32.04833 -29.58779 -28.14204 -25.95653 -25.42432 -23.39197 -21.85202 -19.81821 -18.73667 -17.64961 -16.72207 -16.23817 -15.68044 -15.44425 -14.88991 -14.54506 -14.19062 -14.04441 -13.95772 -13.72627 -13.36213 -12.88768 -12.73983 -12.49304 -12.34524 -12.06800 -11.92280 -11.55881 -11.17576 -11.09979 -10.51597 -10.22106 -9.84643 -9.61981 -9.36700 -9.15094 -8.76514 -8.22147 -7.31562 -6.69455 -4.40362 1.49601 1.92383 2.84663 2.99184 3.04754 3.10130 3.31975 3.42122 3.55521 3.88326 4.18249 4.47747 4.51372 4.85554 5.06829 5.23257 5.38297 5.50346 5.56923 5.62810 5.72914 5.78400 5.82856 6.06710 6.22098 6.45759 6.92345 6.96611 7.11235 7.33645 7.72998 7.82387 8.00359 8.05433 8.58258 8.60741 8.93887 9.23899 10.37620 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.007576 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.138334 B = 3694.847050 C = 4539.739663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.738 5.738 3 C 0.379 3.621 4 C -0.193 4.193 5 C -0.020 4.020 6 C 0.532 3.468 7 O -0.576 6.576 8 N -0.451 5.451 9 C -0.358 4.358 10 H 0.117 0.883 11 C 0.070 3.930 12 N -0.845 5.845 13 Si 0.862 3.138 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.251 1.251 17 C 0.187 3.813 18 C 0.214 3.786 19 N -0.447 5.447 20 C -0.167 4.167 21 C 0.122 3.878 22 N -0.540 5.540 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.401 0.599 27 H 0.131 0.869 28 H 0.281 0.719 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.173 0.827 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 -6.292 -5.260 8.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.374 5.374 3 C 0.144 3.856 4 C -0.219 4.219 5 C -0.031 4.031 6 C 0.322 3.678 7 O -0.459 6.459 8 N -0.172 5.172 9 C -0.484 4.484 10 H 0.134 0.866 11 C -0.140 4.140 12 N -0.478 5.478 13 Si 0.687 3.313 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.175 1.175 17 C 0.061 3.939 18 C -0.104 4.104 19 N -0.126 5.126 20 C -0.189 4.189 21 C -0.033 4.033 22 N -0.258 5.258 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.236 0.764 27 H 0.148 0.852 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.190 0.810 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.255 -6.910 -4.178 8.707 hybrid contribution 0.160 1.271 -0.669 1.445 sum -3.095 -5.639 -4.847 8.054 Atomic orbital electron populations 1.21517 0.79472 1.02130 1.01486 1.44030 1.05310 1.04984 1.83036 1.18097 0.88249 0.85954 0.93291 1.21358 1.00691 0.90696 1.09130 1.19878 0.94105 0.92578 0.96562 1.18309 0.85180 0.84718 0.79596 1.90672 1.24300 1.84925 1.45983 1.43421 1.16610 1.08841 1.48365 1.19264 0.87298 1.08034 1.33837 0.86601 1.25406 0.95067 0.97588 0.95891 1.69655 1.12615 1.32154 1.33358 0.87110 0.79109 0.81761 0.83300 1.19368 1.20372 1.17462 1.19366 0.91569 0.90965 0.91992 1.29894 0.93189 0.92963 0.94396 1.81065 1.11804 1.08277 1.11431 1.22974 0.94486 1.00861 1.00616 1.22375 0.99399 0.86771 0.94798 1.66910 1.05934 1.33126 1.19874 0.92762 0.90816 0.92895 0.76431 0.85155 0.90845 0.87063 0.86565 0.80960 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 9.92 59.85 0.59 1.63 16 2 N -0.74 -9.82 5.89 -67.23 -0.40 -10.22 16 3 C 0.38 6.47 7.65 -155.06 -1.19 5.28 16 4 C -0.19 -3.59 8.93 -38.77 -0.35 -3.93 16 5 C -0.02 -0.41 5.52 -104.69 -0.58 -0.99 16 6 C 0.53 11.72 7.36 -12.25 -0.09 11.63 16 7 O -0.58 -13.45 16.51 5.31 0.09 -13.36 16 8 N -0.45 -9.81 2.08 -118.96 -0.25 -10.06 16 9 C -0.36 -8.19 6.62 -15.02 -0.10 -8.29 16 10 H 0.12 2.87 6.51 -52.49 -0.34 2.53 16 11 C 0.07 1.61 5.31 -17.45 -0.09 1.52 16 12 N -0.84 -20.61 13.95 55.50 0.77 -19.84 16 13 Si 0.86 17.02 24.89 -169.99 -4.23 12.79 16 14 H -0.27 -4.99 6.75 56.52 0.38 -4.61 16 15 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 16 H -0.25 -4.90 7.11 56.52 0.40 -4.49 16 17 C 0.19 3.64 4.40 -6.83 -0.03 3.61 16 18 C 0.21 4.43 15.71 -20.73 -0.33 4.10 16 19 N -0.45 -9.77 18.54 42.19 0.78 -8.99 16 20 C -0.17 -3.19 7.87 -39.00 -0.31 -3.49 16 21 C 0.12 2.10 11.16 -17.62 -0.20 1.91 16 22 N -0.54 -9.50 10.37 -12.49 -0.13 -9.63 16 23 H 0.05 0.58 7.92 -51.92 -0.41 0.17 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.58 7.93 -51.93 -0.41 0.17 16 26 H 0.40 4.65 8.95 -40.82 -0.37 4.28 16 27 H 0.13 2.32 6.68 -52.49 -0.35 1.97 16 28 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 29 H 0.11 2.08 3.78 -51.93 -0.20 1.89 16 30 H 0.12 2.03 7.54 -51.93 -0.39 1.64 16 31 H 0.17 3.45 5.60 -52.48 -0.29 3.15 16 32 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 283.05 15.07 4.27 4.27 Total: -1.00 -28.04 283.05 -4.51 -32.55 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -2.76 Total: 9.51 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -2.66 Total: 12.98 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.78 Total: -58.73 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -4.23 Total: 12.79 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.04 -4.51 -32.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050712189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.318 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds