Wall clock time and date at job start Mon Mar 30 2020 04:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39024 * 120.00281 * 2 1 4 4 C 1.39076 * 119.64423 * 359.97438 * 3 2 1 5 5 C 1.39594 * 118.92202 * 180.23154 * 4 3 2 6 6 C 1.48009 * 120.88896 * 179.72401 * 5 4 3 7 7 O 1.21559 * 120.00152 * 326.22262 * 6 5 4 8 8 N 1.34779 * 119.99993 * 146.21663 * 6 5 4 9 9 C 1.36795 * 119.99677 * 4.69914 * 8 6 5 10 10 H 1.07997 * 119.99929 * 317.51020 * 9 8 6 11 11 C 1.39096 * 120.00063 * 137.52005 * 9 8 6 12 12 N 1.31327 * 120.00238 * 163.74825 * 11 9 8 13 13 Si 1.86800 * 120.00212 * 343.74636 * 11 9 8 14 14 H 1.48496 * 109.47362 * 94.64396 * 13 11 9 15 15 H 1.48498 * 109.47177 * 214.64789 * 13 11 9 16 16 H 1.48502 * 109.46887 * 334.64616 * 13 11 9 17 17 C 1.46501 * 119.99939 * 184.69317 * 8 6 5 18 18 C 1.47195 * 109.47206 * 84.31768 * 17 8 6 19 19 N 7.85063 * 76.20330 * 20.90979 * 2 1 3 20 20 C 1.40100 * 118.22080 * 359.50941 * 5 4 3 21 21 C 1.37911 * 119.17061 * 0.49087 * 20 5 4 22 22 N 1.31945 * 121.00479 * 359.75036 * 21 20 5 23 23 H 1.09009 * 109.46604 * 59.99826 * 1 2 3 24 24 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47009 * 300.00823 * 1 2 3 26 26 H 0.97000 * 119.99298 * 179.97438 * 2 1 3 27 27 H 1.08000 * 120.53579 * 359.95469 * 4 3 2 28 28 H 0.96998 * 120.00166 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.46896 * 204.32081 * 17 8 6 30 30 H 1.09006 * 109.47112 * 324.31316 * 17 8 6 31 31 H 1.08003 * 120.41995 * 180.23417 * 20 5 4 32 32 H 1.08000 * 119.49816 * 179.77024 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2039 0.0000 4 6 1.4574 2.4041 -0.0005 5 6 2.1706 3.6041 -0.0055 6 6 1.4670 4.9062 -0.0124 7 8 0.4088 5.0221 -0.5993 8 7 1.9994 5.9633 0.6322 9 6 3.2346 5.8603 1.2110 10 1 3.4987 4.9718 1.7653 11 6 4.1503 6.8998 1.0856 12 7 5.1923 6.9567 1.8829 13 14 3.8979 8.2149 -0.2168 14 1 3.1887 9.3743 0.3814 15 1 5.2170 8.6560 -0.7368 16 1 3.0874 7.6596 -1.3303 17 6 1.2553 7.2227 0.7130 18 6 0.3165 7.1662 1.8452 19 7 -0.4072 7.1220 2.7210 20 6 3.5703 3.5429 0.0009 21 6 4.1892 2.3105 0.0014 22 7 3.4837 1.1955 0.0009 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5140 0.8899 26 1 1.9499 -0.8401 0.0004 27 1 0.3774 2.4075 -0.0017 28 1 5.8311 7.6814 1.7952 29 1 1.9524 8.0477 0.8597 30 1 0.7000 7.3766 -0.2123 31 1 4.1573 4.4495 0.0012 32 1 5.2679 2.2572 0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050712189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:49 Heat of formation + Delta-G solvation = 41.404227 kcal Electronic energy + Delta-G solvation = -18987.751040 eV Core-core repulsion = 15948.955537 eV Total energy + Delta-G solvation = -3038.795503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.61882 -40.29531 -37.81406 -36.85064 -36.48565 -34.02958 -33.51912 -30.90144 -29.71945 -27.18836 -27.02070 -24.90237 -23.19057 -21.39834 -20.44115 -19.18114 -18.10327 -17.81215 -17.28377 -16.97346 -16.33967 -15.96827 -15.63769 -15.44168 -15.33897 -15.18094 -14.87110 -14.43584 -14.18422 -14.12217 -13.91259 -13.60105 -13.17832 -12.92435 -12.77334 -12.64705 -12.10575 -11.81735 -11.33381 -11.11614 -10.94604 -10.61099 -10.32718 -9.95597 -8.59732 -8.43162 -6.20861 -0.00435 0.51823 1.27404 1.34763 1.44724 1.54368 1.68044 1.90543 2.23375 2.28958 2.59086 2.82062 3.01443 3.21343 3.76639 3.89221 4.07829 4.16695 4.29277 4.31995 4.48160 4.64641 4.65208 4.82278 4.92957 5.02429 5.23652 5.52815 5.71028 5.99276 6.10938 6.17561 6.40070 6.68518 6.85420 7.17184 7.25812 7.49787 8.64733 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.007576 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.138334 B = 3694.847050 C = 4539.739663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.727 5.727 3 C 0.379 3.621 4 C -0.204 4.204 5 C -0.043 4.043 6 C 0.528 3.472 7 O -0.593 6.593 8 N -0.456 5.456 9 C -0.354 4.354 10 H 0.089 0.911 11 C 0.040 3.960 12 N -0.884 5.884 13 Si 0.907 3.093 14 H -0.244 1.244 15 H -0.280 1.280 16 H -0.246 1.246 17 C 0.184 3.816 18 C 0.225 3.775 19 N -0.470 5.470 20 C -0.179 4.179 21 C 0.130 3.870 22 N -0.546 5.546 23 H 0.052 0.948 24 H 0.111 0.889 25 H 0.047 0.953 26 H 0.412 0.588 27 H 0.133 0.867 28 H 0.285 0.715 29 H 0.124 0.876 30 H 0.141 0.859 31 H 0.159 0.841 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 -6.784 -6.164 9.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.362 5.362 3 C 0.143 3.857 4 C -0.230 4.230 5 C -0.053 4.053 6 C 0.319 3.681 7 O -0.477 6.477 8 N -0.177 5.177 9 C -0.481 4.481 10 H 0.107 0.893 11 C -0.167 4.167 12 N -0.518 5.518 13 Si 0.730 3.270 14 H -0.169 1.169 15 H -0.206 1.206 16 H -0.169 1.169 17 C 0.058 3.942 18 C -0.093 4.093 19 N -0.150 5.150 20 C -0.202 4.202 21 C -0.026 4.026 22 N -0.264 5.264 23 H 0.071 0.929 24 H 0.130 0.870 25 H 0.066 0.934 26 H 0.248 0.752 27 H 0.151 0.849 28 H 0.095 0.905 29 H 0.141 0.859 30 H 0.159 0.841 31 H 0.177 0.823 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.662 -7.432 -5.075 9.716 hybrid contribution 0.252 1.275 -0.369 1.351 sum -3.411 -6.157 -5.444 8.898 Atomic orbital electron populations 1.21750 0.77649 1.04591 1.01106 1.44201 1.06475 1.04125 1.81379 1.18333 0.88290 0.86881 0.92151 1.21415 1.00879 0.90802 1.09864 1.19952 0.94792 0.92475 0.98125 1.18641 0.84984 0.85368 0.79096 1.90642 1.24975 1.85360 1.46734 1.43451 1.16446 1.09623 1.48206 1.18985 0.88268 1.07408 1.33409 0.89326 1.25899 0.94496 0.99282 0.97036 1.69727 1.13717 1.33405 1.34961 0.86375 0.79269 0.80186 0.81157 1.16937 1.20576 1.16894 1.19627 0.91689 0.90228 0.92609 1.30096 0.92817 0.92256 0.94167 1.81068 1.12734 1.08982 1.12183 1.22814 0.93962 1.01188 1.02193 1.22773 1.00709 0.86009 0.93081 1.67064 1.06127 1.32931 1.20315 0.92922 0.87007 0.93438 0.75208 0.84883 0.90498 0.85917 0.84122 0.82321 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 9.92 127.77 1.27 3.00 16 2 N -0.73 -17.77 5.89 -366.61 -2.16 -19.93 16 3 C 0.38 12.50 7.65 133.06 1.02 13.51 16 4 C -0.20 -7.49 8.93 22.80 0.20 -7.29 16 5 C -0.04 -1.74 5.52 -19.91 -0.11 -1.85 16 6 C 0.53 23.25 7.36 86.83 0.64 23.88 16 7 O -0.59 -27.41 16.51 -3.90 -0.06 -27.48 16 8 N -0.46 -19.67 2.08 -648.55 -1.35 -21.02 16 9 C -0.35 -16.35 6.62 84.13 0.56 -15.79 16 10 H 0.09 4.54 6.51 -2.91 -0.02 4.53 16 11 C 0.04 1.81 5.31 84.97 0.45 2.26 16 12 N -0.88 -43.38 13.95 21.69 0.30 -43.08 16 13 Si 0.91 33.70 24.89 68.60 1.71 35.41 16 14 H -0.24 -8.18 6.75 99.48 0.67 -7.51 16 15 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 16 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 17 C 0.18 6.89 4.40 84.57 0.37 7.26 16 18 C 0.23 9.08 15.71 89.43 1.41 10.49 16 19 N -0.47 -20.28 18.54 20.02 0.37 -19.90 16 20 C -0.18 -6.88 7.87 22.64 0.18 -6.70 16 21 C 0.13 4.38 11.16 84.60 0.94 5.32 16 22 N -0.55 -18.46 10.37 -193.43 -2.01 -20.46 16 23 H 0.05 1.03 7.92 -2.38 -0.02 1.01 16 24 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 25 H 0.05 0.96 7.93 -2.39 -0.02 0.94 16 26 H 0.41 8.46 8.95 -92.71 -0.83 7.63 16 27 H 0.13 4.71 6.68 -2.91 -0.02 4.69 16 28 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 29 H 0.12 4.32 3.78 -2.39 -0.01 4.31 16 30 H 0.14 4.60 7.54 -2.38 -0.02 4.59 16 31 H 0.16 6.50 5.60 -2.91 -0.02 6.49 16 32 H 0.18 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -59.35 283.05 4.05 -55.30 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.32 Total: 27.06 kcal Atomic # 6 Polarization: 27.18 SS G_CDS: 6.93 Total: 34.10 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -4.84 Total: -124.40 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.06 Total: -27.48 kcal Atomic # 14 Polarization: 33.70 SS G_CDS: 1.71 Total: 35.41 kcal Total: -59.35 4.05 -55.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050712189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.706 kcal (2) G-P(sol) polarization free energy of solvation -59.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds