Wall clock time and date at job start Mon Mar 30 2020 04:31:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13603 * 1
3 3 C 1.47195 * 179.97438 * 2 1
4 4 N 1.46500 * 109.46934 * 352.80400 * 3 2 1
5 5 C 1.36908 * 120.00254 * 271.87884 * 4 3 2
6 6 H 1.07998 * 120.00729 * 189.97268 * 5 4 3
7 7 C 1.39023 * 119.99895 * 9.96885 * 5 4 3
8 8 N 1.31389 * 119.99400 * 30.75624 * 7 5 4
9 9 Si 1.86797 * 120.00362 * 210.75762 * 7 5 4
10 10 H 1.48501 * 109.47087 * 94.99758 * 9 7 5
11 11 H 1.48501 * 109.47031 * 214.99783 * 9 7 5
12 12 H 1.48499 * 109.46806 * 334.99713 * 9 7 5
13 13 C 1.34775 * 120.00035 * 91.88619 * 4 3 2
14 14 O 1.21644 * 120.00151 * 184.73540 * 13 4 3
15 15 C 1.47325 * 120.00349 * 4.72893 * 13 4 3
16 16 C 1.39792 * 120.21285 * 302.86547 * 15 13 4
17 17 C 1.37733 * 119.92167 * 180.02562 * 16 15 13
18 18 C 1.38624 * 120.35785 * 359.97438 * 17 16 15
19 19 C 1.37974 * 120.43055 * 0.02562 * 18 17 16
20 20 C 1.38932 * 120.07433 * 0.02562 * 19 18 17
21 21 N 1.38882 * 120.17796 * 179.97438 * 20 19 18
22 22 N 1.36599 * 120.00102 * 5.24287 * 21 20 19
23 23 H 1.08997 * 109.47275 * 232.80281 * 3 2 1
24 24 H 1.09000 * 109.47360 * 112.80202 * 3 2 1
25 25 H 0.97008 * 119.99836 * 180.02562 * 8 7 5
26 26 H 1.08005 * 120.03990 * 0.02562 * 16 15 13
27 27 H 1.08003 * 119.82122 * 180.02562 * 17 16 15
28 28 H 1.07994 * 119.78378 * 180.02562 * 18 17 16
29 29 H 1.08001 * 119.95946 * 179.72212 * 19 18 17
30 30 H 0.97005 * 119.99697 * 185.24083 * 21 20 19
31 31 H 1.00897 * 110.99924 * 56.04662 * 22 21 20
32 32 H 1.00899 * 110.99395 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0969 -1.3695 0.1730
5 6 3.2886 -1.8742 1.4312
6 1 3.7973 -2.8177 1.5629
7 6 2.8286 -1.1720 2.5393
8 7 1.7569 -0.4183 2.4408
9 14 3.7339 -1.3002 4.1682
10 1 4.6904 -0.1711 4.2930
11 1 2.7554 -1.2456 5.2840
12 1 4.4755 -2.5856 4.2225
13 6 3.3580 -2.1331 -0.9064
14 8 3.6811 -3.2972 -0.7641
15 6 3.2522 -1.5582 -2.2586
16 6 2.0522 -0.9828 -2.6864
17 6 1.9597 -0.4475 -3.9521
18 6 3.0514 -0.4752 -4.8060
19 6 4.2429 -1.0394 -4.3989
20 6 4.3557 -1.5855 -3.1264
21 7 5.5538 -2.1545 -2.7146
22 7 6.6557 -2.0835 -3.5188
23 1 2.9711 0.6221 0.8186
24 1 2.9712 0.3991 -0.9473
25 1 1.4360 0.0720 3.2140
26 1 1.1985 -0.9580 -2.0253
27 1 1.0319 -0.0029 -4.2808
28 1 2.9687 -0.0524 -5.7963
29 1 5.0872 -1.0609 -5.0720
30 1 5.6082 -2.6023 -1.8558
31 1 6.8720 -1.1259 -3.7521
32 1 7.4471 -2.5382 -3.0887
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000051089016.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:52
Heat of formation + Delta-G solvation = 66.760509 kcal
Electronic energy + Delta-G solvation = -19321.320926 eV
Core-core repulsion = 16283.624953 eV
Total energy + Delta-G solvation = -3037.695973 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 260.101 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.85845 -37.95481 -36.27988 -35.71682 -34.30009 -32.09531 -30.86495 -30.35016
-27.48065 -26.83375 -25.16861 -22.87429 -21.43133 -19.72349 -18.05542 -17.62683
-17.08366 -16.59282 -16.24936 -15.26878 -14.94594 -14.43777 -14.26986 -13.98201
-13.61472 -13.18038 -12.88353 -12.79832 -12.64606 -12.09944 -11.65718 -11.55347
-11.27068 -11.19653 -11.14075 -10.84453 -10.52161 -10.42223 -10.37795 -9.31055
-9.03849 -8.77120 -8.40182 -8.19090 -6.87202 -6.64479 -4.00868 1.58809
1.94506 3.02716 3.17055 3.21664 3.30233 3.50928 3.75813 3.99948
4.08039 4.23242 4.70354 4.85579 5.08469 5.22423 5.34212 5.39490
5.55290 5.78454 5.89959 6.01866 6.07079 6.36544 6.38743 6.53692
6.71038 6.80761 6.94252 7.23327 7.38361 7.79739 7.86584 8.20181
8.41107 8.77913 8.90973 9.12071 9.67951 10.40768
Molecular weight = 260.10amu
Principal moments of inertia in cm(-1)
A = 0.022114 B = 0.007815 C = 0.006182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1265.870070 B = 3581.896128 C = 4528.213595
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.468 5.468
2 C 0.250 3.750
3 C 0.218 3.782
4 N -0.428 5.428
5 C -0.326 4.326
6 H 0.114 0.886
7 C 0.038 3.962
8 N -0.856 5.856
9 Si 0.921 3.079
10 H -0.275 1.275
11 H -0.284 1.284
12 H -0.267 1.267
13 C 0.489 3.511
14 O -0.577 6.577
15 C -0.178 4.178
16 C -0.053 4.053
17 C -0.183 4.183
18 C -0.069 4.069
19 C -0.193 4.193
20 C 0.257 3.743
21 N -0.588 5.588
22 N -0.604 5.604
23 H 0.116 0.884
24 H 0.092 0.908
25 H 0.276 0.724
26 H 0.122 0.878
27 H 0.117 0.883
28 H 0.118 0.882
29 H 0.126 0.874
30 H 0.415 0.585
31 H 0.329 0.671
32 H 0.355 0.645
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.008 4.742 -9.137 13.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.149 5.149
2 C -0.068 4.068
3 C 0.091 3.909
4 N -0.146 5.146
5 C -0.452 4.452
6 H 0.131 0.869
7 C -0.168 4.168
8 N -0.493 5.493
9 Si 0.747 3.253
10 H -0.201 1.201
11 H -0.210 1.210
12 H -0.191 1.191
13 C 0.279 3.721
14 O -0.462 6.462
15 C -0.187 4.187
16 C -0.073 4.073
17 C -0.203 4.203
18 C -0.088 4.088
19 C -0.216 4.216
20 C 0.150 3.850
21 N -0.312 5.312
22 N -0.229 5.229
23 H 0.134 0.866
24 H 0.109 0.891
25 H 0.086 0.914
26 H 0.140 0.860
27 H 0.135 0.865
28 H 0.136 0.864
29 H 0.144 0.856
30 H 0.256 0.744
31 H 0.143 0.857
32 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 6.130 3.856 -9.499 11.945
hybrid contribution 1.159 0.421 2.115 2.448
sum 7.289 4.277 -7.384 11.222
Atomic orbital electron populations
1.80894 1.13351 1.07969 1.12662 1.28992 0.95163 0.92904 0.89771
1.18757 0.82153 0.87157 1.02880 1.43655 1.55252 1.09795 1.05902
1.19737 1.36741 1.08743 0.80021 0.86885 1.25265 0.94566 0.96970
1.00011 1.69935 1.17058 1.29731 1.32578 0.85990 0.79495 0.79137
0.80683 1.20112 1.21036 1.19146 1.17797 0.85034 0.85939 0.83323
1.90644 1.53532 1.16046 1.85981 1.19532 0.94660 1.08495 0.96061
1.21197 0.95956 0.94053 0.96052 1.20764 0.99120 1.05787 0.94666
1.20908 0.92390 0.96860 0.98678 1.20475 0.99408 1.06920 0.94840
1.17461 0.84067 0.91281 0.92185 1.43320 1.03952 1.62911 1.21002
1.60032 1.01625 1.21336 1.39864 0.86631 0.89068 0.91362 0.85992
0.86476 0.86417 0.85592 0.74355 0.85701 0.83154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.47 -11.20 18.48 42.15 0.78 -10.42 16
2 C 0.25 5.60 10.63 -20.76 -0.22 5.38 16
3 C 0.22 4.45 4.77 -6.83 -0.03 4.42 16
4 N -0.43 -10.00 2.58 -119.19 -0.31 -10.31 16
5 C -0.33 -8.30 9.34 -14.99 -0.14 -8.44 16
6 H 0.11 3.04 7.39 -52.49 -0.39 2.65 16
7 C 0.04 0.92 4.71 -17.45 -0.08 0.84 16
8 N -0.86 -21.39 9.46 55.50 0.52 -20.87 16
9 Si 0.92 19.08 29.65 -169.99 -5.04 14.04 16
10 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16
11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
12 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16
13 C 0.49 11.31 6.37 -12.57 -0.08 11.23 16
14 O -0.58 -15.10 15.60 5.24 0.08 -15.02 16
15 C -0.18 -3.47 4.61 -104.80 -0.48 -3.95 16
16 C -0.05 -0.96 7.79 -39.19 -0.31 -1.26 16
17 C -0.18 -2.75 10.02 -39.62 -0.40 -3.15 16
18 C -0.07 -0.93 10.03 -39.54 -0.40 -1.33 16
19 C -0.19 -2.79 9.34 -39.42 -0.37 -3.16 16
20 C 0.26 4.38 6.69 -83.59 -0.56 3.82 16
21 N -0.59 -9.20 6.54 32.56 0.21 -8.99 16
22 N -0.60 -6.93 9.49 60.35 0.57 -6.36 16
23 H 0.12 2.34 6.73 -51.93 -0.35 1.99 16
24 H 0.09 1.57 6.05 -51.93 -0.31 1.25 16
25 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16
26 H 0.12 2.42 5.45 -52.48 -0.29 2.13 16
27 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16
28 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16
29 H 0.13 1.57 7.18 -52.49 -0.38 1.19 16
30 H 0.42 7.23 6.93 -185.15 -1.28 5.95 16
31 H 0.33 3.14 8.66 -181.37 -1.57 1.57 16
32 H 0.36 3.21 9.21 -181.37 -1.67 1.54 16
LS Contribution 279.42 15.07 4.21 4.21
Total: -1.00 -30.54 279.42 -8.25 -38.78
By element:
Atomic # 1 Polarization: 16.76 SS G_CDS: -6.22 Total: 10.54 kcal
Atomic # 6 Polarization: 7.46 SS G_CDS: -3.06 Total: 4.40 kcal
Atomic # 7 Polarization: -58.73 SS G_CDS: 1.78 Total: -56.95 kcal
Atomic # 8 Polarization: -15.10 SS G_CDS: 0.08 Total: -15.02 kcal
Atomic # 14 Polarization: 19.08 SS G_CDS: -5.04 Total: 14.04 kcal
Total LS contribution 4.21 Total: 4.21 kcal
Total: -30.54 -8.25 -38.78 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000051089016.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.544 kcal
(2) G-P(sol) polarization free energy of solvation -30.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.761 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds