Wall clock time and date at job start Mon Mar 30 2020 05:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48494 * 109.47290 * 270.00488 * 3 2 1 5 5 H 1.48507 * 109.46928 * 30.00300 * 3 2 1 6 6 H 1.48499 * 109.47339 * 149.99942 * 3 2 1 7 7 C 1.37877 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99717 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99676 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46781 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47258 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00577 * 179.97438 * 11 10 9 13 13 O 1.21602 * 119.99359 * 0.02562 * 12 11 10 14 14 C 1.47513 * 120.00516 * 180.02562 * 12 11 10 15 15 C 1.39812 * 120.23816 * 359.97438 * 14 12 11 16 16 C 1.37313 * 120.09163 * 180.02562 * 15 14 12 17 17 C 1.40026 * 120.47809 * 359.97438 * 16 15 14 18 18 C 1.38936 * 119.23212 * 359.97438 * 17 16 15 19 19 C 1.37682 * 120.64846 * 0.02562 * 18 17 16 20 20 C 1.51259 * 108.46883 * 179.97438 * 18 17 16 21 21 C 1.53748 * 104.44223 * 0.02562 * 20 18 17 22 22 N 1.38995 * 129.11356 * 179.97438 * 17 16 15 23 23 H 0.97000 * 120.00519 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47451 * 60.00230 * 9 7 2 25 25 H 1.08997 * 109.47240 * 299.99971 * 9 7 2 26 26 H 1.08997 * 109.47067 * 59.99839 * 10 9 7 27 27 H 1.08997 * 109.47083 * 299.99912 * 10 9 7 28 28 H 0.97002 * 120.00042 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.95413 * 0.04501 * 15 14 12 30 30 H 1.08001 * 119.75788 * 180.02562 * 16 15 14 31 31 H 1.07996 * 119.98730 * 180.02562 * 19 18 17 32 32 H 1.09005 * 110.44195 * 118.74209 * 20 18 17 33 33 H 1.09001 * 110.44362 * 241.26104 * 20 18 17 34 34 H 1.08997 * 110.30352 * 241.06834 * 21 20 18 35 35 H 1.09001 * 110.30047 * 118.92966 * 21 20 18 36 36 H 0.96997 * 124.88810 * 359.75379 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0018 13 8 3.4028 -6.0978 -0.0014 14 6 1.4493 -7.3755 -0.0030 15 6 0.0512 -7.3814 -0.0029 16 6 -0.6322 -8.5724 -0.0035 17 6 0.0609 -9.7890 -0.0047 18 6 1.4503 -9.7783 -0.0058 19 6 2.1430 -8.5885 -0.0053 20 6 1.9404 -11.2093 -0.0063 21 6 0.6562 -12.0545 -0.0060 22 7 -0.4420 -11.0848 -0.0049 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6042 0.8894 27 1 2.8720 -3.6042 -0.8905 28 1 0.5430 -4.9308 -0.0011 29 1 -0.4920 -6.4479 -0.0027 30 1 -1.7122 -8.5706 -0.0039 31 1 3.2230 -8.5927 -0.0066 32 1 2.5277 -11.4102 -0.9024 33 1 2.5291 -11.4104 0.8887 34 1 0.6125 -12.6758 0.8886 35 1 0.6118 -12.6754 -0.9009 36 1 -1.3845 -11.3141 -0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:26 Heat of formation + Delta-G solvation = -16.196553 kcal Electronic energy + Delta-G solvation = -18114.373634 eV Core-core repulsion = 15176.620717 eV Total energy + Delta-G solvation = -2937.752917 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57384 -38.98342 -36.08150 -34.80225 -32.82500 -32.17762 -30.33196 -28.95195 -28.83392 -25.03768 -23.26482 -22.48988 -21.84288 -20.91826 -19.77796 -17.81146 -16.90190 -16.40923 -15.94041 -15.87927 -15.12459 -14.75294 -14.48082 -13.98400 -13.84722 -13.45534 -13.14946 -12.81666 -12.54767 -12.44937 -12.41396 -12.28511 -12.12660 -11.16443 -11.00938 -10.91798 -10.60668 -10.33512 -10.19182 -9.76585 -9.42234 -9.15729 -8.90145 -8.49287 -8.30272 -7.51601 -6.06291 -4.08777 1.11170 1.36986 3.09585 3.17128 3.31932 3.37814 3.42148 3.79059 4.05123 4.37200 4.43288 4.46750 4.77588 4.90985 5.04798 5.17102 5.25633 5.30785 5.33314 5.41831 5.60950 5.66471 5.95934 6.15186 6.27213 6.38477 6.41883 6.47733 6.53647 6.80289 6.96500 7.02788 7.49916 7.56563 7.66421 7.92490 8.12241 8.32459 8.76825 8.97438 9.55828 11.05404 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.054641 B = 0.003231 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.309117 B = 8664.183806 C = 9145.319852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.719 5.719 12 C 0.555 3.445 13 O -0.556 6.556 14 C -0.182 4.182 15 C -0.038 4.038 16 C -0.190 4.190 17 C 0.215 3.785 18 C -0.188 4.188 19 C -0.001 4.001 20 C -0.082 4.082 21 C 0.117 3.883 22 N -0.742 5.742 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.396 0.604 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 -23.977 -0.004 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.026 4.026 10 C 0.000 4.000 11 N -0.369 5.369 12 C 0.342 3.658 13 O -0.436 6.436 14 C -0.187 4.187 15 C -0.057 4.057 16 C -0.212 4.212 17 C 0.110 3.890 18 C -0.193 4.193 19 C -0.020 4.020 20 C -0.120 4.120 21 C -0.007 4.007 22 N -0.373 5.373 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.230 0.770 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.151 0.849 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.151 -23.988 -0.002 24.084 hybrid contribution -0.635 0.856 -0.006 1.066 sum -2.786 -23.132 -0.008 23.299 Atomic orbital electron populations 1.69953 1.06085 1.26830 1.50511 1.24996 0.94890 0.99394 0.95037 0.86513 0.79849 0.83020 0.78179 1.20575 1.21197 1.19725 1.21063 0.93274 0.90400 1.51172 0.92223 1.19330 0.94241 0.91149 0.97836 1.21720 0.96035 0.81415 1.00840 1.46235 1.10437 1.06460 1.73788 1.18118 0.87203 0.83743 0.76696 1.90729 1.13588 1.87846 1.51408 1.19706 0.93424 0.93566 1.12023 1.21000 0.93080 0.97670 0.93952 1.20223 0.99548 0.89849 1.11607 1.18517 0.92767 0.85933 0.91814 1.19749 0.92672 0.94786 1.12121 1.20374 1.00215 0.89173 0.92267 1.21011 0.96965 0.90620 1.03360 1.21813 0.85905 0.91677 1.01340 1.44657 1.07958 1.02781 1.81945 0.92878 0.95926 0.95929 0.92505 0.92516 0.76982 0.85170 0.85941 0.84927 0.89736 0.89733 0.91475 0.91456 0.75052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.70 5.61 -4.04 -0.02 2.68 16 11 N -0.72 -13.43 5.51 -61.36 -0.34 -13.77 16 12 C 0.55 10.40 7.76 -12.48 -0.10 10.30 16 13 O -0.56 -12.25 16.35 5.28 0.09 -12.17 16 14 C -0.18 -2.76 5.88 -104.97 -0.62 -3.38 16 15 C -0.04 -0.48 9.51 -39.33 -0.37 -0.85 16 16 C -0.19 -2.10 10.05 -39.25 -0.39 -2.50 16 17 C 0.21 2.33 7.03 -83.68 -0.59 1.75 16 18 C -0.19 -2.18 6.22 -104.29 -0.65 -2.83 16 19 C 0.00 -0.01 9.58 -39.23 -0.38 -0.39 16 20 C -0.08 -0.66 6.95 -27.22 -0.19 -0.85 16 21 C 0.12 0.75 7.96 -3.65 -0.03 0.72 16 22 N -0.74 -5.86 6.49 -58.11 -0.38 -6.24 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.40 6.39 6.51 -40.82 -0.27 6.13 16 29 H 0.13 1.46 6.40 -52.49 -0.34 1.12 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.85 7.65 -52.49 -0.40 1.44 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.41 2.35 8.96 -40.82 -0.37 1.98 16 LS Contribution 307.47 15.07 4.63 4.63 Total: -1.00 -33.24 307.47 -8.88 -42.12 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.72 Total: 3.05 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -3.89 Total: -8.58 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.02 Total: -45.63 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.24 -8.88 -42.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.928 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds