Wall clock time and date at job start Mon Mar 30 2020 05:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48494 * 109.47290 * 270.00488 * 3 2 1 5 5 H 1.48507 * 109.46928 * 30.00300 * 3 2 1 6 6 H 1.48499 * 109.47339 * 149.99942 * 3 2 1 7 7 C 1.37877 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99717 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99676 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46781 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47258 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00577 * 179.97438 * 11 10 9 13 13 O 1.21602 * 119.99359 * 0.02562 * 12 11 10 14 14 C 1.47513 * 120.00516 * 180.02562 * 12 11 10 15 15 C 1.39812 * 120.23816 * 359.97438 * 14 12 11 16 16 C 1.37313 * 120.09163 * 180.02562 * 15 14 12 17 17 C 1.40026 * 120.47809 * 359.97438 * 16 15 14 18 18 C 1.38936 * 119.23212 * 359.97438 * 17 16 15 19 19 C 1.37682 * 120.64846 * 0.02562 * 18 17 16 20 20 C 1.51259 * 108.46883 * 179.97438 * 18 17 16 21 21 C 1.53748 * 104.44223 * 0.02562 * 20 18 17 22 22 N 1.38995 * 129.11356 * 179.97438 * 17 16 15 23 23 H 0.97000 * 120.00519 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47451 * 60.00230 * 9 7 2 25 25 H 1.08997 * 109.47240 * 299.99971 * 9 7 2 26 26 H 1.08997 * 109.47067 * 59.99839 * 10 9 7 27 27 H 1.08997 * 109.47083 * 299.99912 * 10 9 7 28 28 H 0.97002 * 120.00042 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.95413 * 0.04501 * 15 14 12 30 30 H 1.08001 * 119.75788 * 180.02562 * 16 15 14 31 31 H 1.07996 * 119.98730 * 180.02562 * 19 18 17 32 32 H 1.09005 * 110.44195 * 118.74209 * 20 18 17 33 33 H 1.09001 * 110.44362 * 241.26104 * 20 18 17 34 34 H 1.08997 * 110.30352 * 241.06834 * 21 20 18 35 35 H 1.09001 * 110.30047 * 118.92966 * 21 20 18 36 36 H 0.96997 * 124.88810 * 359.75379 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0018 13 8 3.4028 -6.0978 -0.0014 14 6 1.4493 -7.3755 -0.0030 15 6 0.0512 -7.3814 -0.0029 16 6 -0.6322 -8.5724 -0.0035 17 6 0.0609 -9.7890 -0.0047 18 6 1.4503 -9.7783 -0.0058 19 6 2.1430 -8.5885 -0.0053 20 6 1.9404 -11.2093 -0.0063 21 6 0.6562 -12.0545 -0.0060 22 7 -0.4420 -11.0848 -0.0049 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6042 0.8894 27 1 2.8720 -3.6042 -0.8905 28 1 0.5430 -4.9308 -0.0011 29 1 -0.4920 -6.4479 -0.0027 30 1 -1.7122 -8.5706 -0.0039 31 1 3.2230 -8.5927 -0.0066 32 1 2.5277 -11.4102 -0.9024 33 1 2.5291 -11.4104 0.8887 34 1 0.6125 -12.6758 0.8886 35 1 0.6118 -12.6754 -0.9009 36 1 -1.3845 -11.3141 -0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:26 Heat of formation + Delta-G solvation = -38.961132 kcal Electronic energy + Delta-G solvation = -18115.360781 eV Core-core repulsion = 15176.620717 eV Total energy + Delta-G solvation = -2938.740063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51412 -40.33284 -37.03091 -36.58436 -34.82141 -33.01424 -31.92085 -30.23055 -29.66852 -26.87929 -24.51757 -23.37990 -22.78100 -22.63459 -21.12258 -18.80362 -18.49109 -18.01548 -17.08471 -16.53544 -16.47938 -16.37862 -16.32938 -15.23778 -14.85591 -14.74004 -14.66605 -14.28807 -13.67516 -13.53888 -13.43038 -13.19156 -12.99214 -12.92742 -12.80981 -12.52795 -12.24149 -11.83342 -11.65910 -11.46106 -11.09174 -10.89991 -10.59956 -10.02866 -9.82641 -8.32192 -8.23522 -6.34014 0.05444 0.44649 1.42217 1.42981 1.54531 1.93281 2.26966 2.43216 2.48688 2.93742 3.11031 3.63732 3.76657 3.90246 4.09857 4.25056 4.29714 4.41838 4.47140 4.49573 4.58204 4.77623 4.85052 4.92617 5.10014 5.11844 5.25343 5.29663 5.37342 5.47586 5.51425 5.58330 5.60850 5.79309 6.13963 6.16746 6.65731 6.78868 6.90096 7.28994 7.35106 8.88490 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.054641 B = 0.003231 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.309117 B = 8664.183806 C = 9145.319852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.715 5.715 12 C 0.554 3.446 13 O -0.598 6.598 14 C -0.213 4.213 15 C -0.037 4.037 16 C -0.192 4.192 17 C 0.222 3.778 18 C -0.199 4.199 19 C -0.012 4.012 20 C -0.085 4.085 21 C 0.115 3.885 22 N -0.729 5.729 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.408 0.592 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 -25.795 -0.015 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.366 5.366 12 C 0.345 3.655 13 O -0.481 6.481 14 C -0.218 4.218 15 C -0.057 4.057 16 C -0.214 4.214 17 C 0.114 3.886 18 C -0.204 4.204 19 C -0.031 4.031 20 C -0.122 4.122 21 C -0.009 4.009 22 N -0.360 5.360 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.245 0.755 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.177 -25.863 -0.014 26.057 hybrid contribution -0.405 1.238 -0.003 1.303 sum -3.582 -24.625 -0.017 24.884 Atomic orbital electron populations 1.70055 1.07526 1.28029 1.50968 1.25877 0.95825 1.03098 0.94367 0.85429 0.78602 0.78376 0.78544 1.19717 1.20400 1.19120 1.21466 0.93595 0.91922 1.51620 0.92336 1.19134 0.94194 0.91670 0.96416 1.21247 0.95123 0.82114 0.99812 1.46034 1.10970 1.05494 1.74085 1.18695 0.86893 0.84676 0.75266 1.90688 1.15471 1.88473 1.53456 1.19432 0.94388 0.91886 1.16082 1.21109 0.91992 0.99026 0.93545 1.20474 1.00855 0.89259 1.10828 1.18723 0.92648 0.87127 0.90120 1.20052 0.93329 0.95650 1.11403 1.20359 0.99827 0.89886 0.93076 1.21161 0.98234 0.88471 1.04339 1.22033 0.84170 0.91225 1.03452 1.44819 1.09255 1.01824 1.80082 0.92498 0.97214 0.97220 0.93564 0.93553 0.75511 0.84236 0.83260 0.86162 0.88826 0.88824 0.89358 0.89344 0.73506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 2 C 0.01 0.40 5.46 84.66 0.46 0.87 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.36 9.11 25.60 0.23 -31.13 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.14 6.46 5.61 86.38 0.48 6.94 16 11 N -0.72 -27.65 5.51 -466.29 -2.57 -30.22 16 12 C 0.55 21.65 7.76 86.69 0.67 22.33 16 13 O -0.60 -27.71 16.35 -4.04 -0.07 -27.78 16 14 C -0.21 -6.59 5.88 -20.09 -0.12 -6.71 16 15 C -0.04 -0.92 9.51 22.43 0.21 -0.71 16 16 C -0.19 -3.82 10.05 22.49 0.23 -3.59 16 17 C 0.22 4.25 7.03 38.61 0.27 4.52 16 18 C -0.20 -4.32 6.22 -19.65 -0.12 -4.45 16 19 C -0.01 -0.33 9.58 22.50 0.22 -0.11 16 20 C -0.08 -1.14 6.95 30.28 0.21 -0.93 16 21 C 0.11 1.01 7.96 86.63 0.69 1.69 16 22 N -0.73 -8.77 6.49 -337.75 -2.19 -10.96 16 23 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.41 13.53 6.51 -92.71 -0.60 12.92 16 29 H 0.14 3.04 6.40 -2.91 -0.02 3.02 16 30 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.12 3.56 7.65 -2.91 -0.02 3.54 16 32 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.43 3.07 8.96 -92.71 -0.83 2.24 16 Total: -1.00 -72.59 307.47 0.75 -71.84 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -0.33 Total: 15.37 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 3.59 Total: -9.90 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -4.48 Total: -95.84 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.07 Total: -27.78 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.59 0.75 -71.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.881 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds