Wall clock time and date at job start Mon Mar 30 2020 04:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34526 * 124.48113 * 239.99860 * 13 3 2 15 15 O 1.21438 * 125.70402 * 359.96688 * 14 13 3 16 16 C 1.47717 * 108.59019 * 180.02562 * 14 13 3 17 17 C 1.39009 * 134.54677 * 179.97438 * 16 14 13 18 18 C 1.38880 * 118.02412 * 180.02562 * 17 16 14 19 19 C 1.38465 * 119.41062 * 359.97438 * 18 17 16 20 20 N 1.31882 * 121.37238 * 0.02875 * 19 18 17 21 21 C 1.32005 * 121.56320 * 359.94601 * 20 19 18 22 22 C 1.34507 * 124.47824 * 59.70245 * 13 3 2 23 23 O 1.21404 * 125.71368 * 359.95626 * 22 13 3 24 24 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 25 25 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 28 28 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 29 29 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.98463 * 0.04164 * 17 16 14 31 31 H 1.08008 * 120.29261 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.31502 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.8783 3.1950 1.3292 15 8 0.3977 3.7911 0.3866 16 6 0.7118 3.5545 2.7522 17 6 0.0383 4.5637 3.4307 18 6 0.1134 4.5803 4.8174 19 6 0.8464 3.6038 5.4704 20 7 1.4765 2.6568 4.8029 21 6 1.4360 2.5967 3.4849 22 6 2.0189 1.6778 2.4760 23 8 2.7122 0.7103 2.7155 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0607 -2.9502 30 1 -0.5267 5.3124 2.8954 31 1 -0.3955 5.3481 5.3814 32 1 0.9041 3.6185 6.5488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:32 Heat of formation + Delta-G solvation = -28.010814 kcal Electronic energy + Delta-G solvation = -19441.396676 eV Core-core repulsion = 16367.298360 eV Total energy + Delta-G solvation = -3074.098317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.45107 -40.48218 -39.68258 -37.34037 -36.07073 -33.86921 -33.63262 -32.09242 -29.28708 -26.53269 -26.21086 -24.65311 -23.73200 -22.32233 -20.80515 -19.40794 -18.85504 -18.08854 -17.50310 -17.47534 -16.90959 -16.40595 -15.98033 -15.47272 -15.20246 -15.03521 -14.81344 -14.55226 -14.44627 -13.86704 -13.73614 -13.35725 -13.11612 -12.77760 -12.44987 -12.22956 -12.03158 -11.80363 -11.60231 -11.28933 -11.21059 -10.68894 -10.56063 -10.46679 -10.28138 -8.28276 -6.43697 -1.15396 -0.10425 0.88798 1.33241 1.36078 1.38866 1.50350 1.93012 2.25774 2.36929 2.61470 3.00390 3.19730 3.40238 3.68624 3.84511 4.18592 4.29464 4.32932 4.36087 4.44006 4.67984 4.75154 4.81808 4.92637 5.01748 5.12014 5.37125 5.42460 5.48572 5.69962 5.82602 6.09309 6.18693 6.50210 6.61750 6.72812 7.25374 8.77018 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.006907 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.767979 B = 4053.059371 C = 4334.139116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.275 3.725 4 H 0.042 0.958 5 C -0.548 4.548 6 H 0.044 0.956 7 C 0.027 3.973 8 N -0.905 5.905 9 Si 0.964 3.036 10 H -0.277 1.277 11 H -0.272 1.272 12 H -0.269 1.269 13 N -0.559 5.559 14 C 0.567 3.433 15 O -0.497 6.497 16 C -0.201 4.201 17 C -0.002 4.002 18 C -0.118 4.118 19 C 0.121 3.879 20 N -0.460 5.460 21 C 0.076 3.924 22 C 0.570 3.430 23 O -0.473 6.473 24 H 0.033 0.967 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.038 0.962 29 H 0.271 0.729 30 H 0.181 0.819 31 H 0.213 0.787 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 9.187 14.158 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.177 3.823 4 H 0.059 0.941 5 C -0.586 4.586 6 H 0.063 0.937 7 C -0.174 4.174 8 N -0.543 5.543 9 Si 0.789 3.211 10 H -0.202 1.202 11 H -0.197 1.197 12 H -0.194 1.194 13 N -0.299 5.299 14 C 0.357 3.643 15 O -0.371 6.371 16 C -0.208 4.208 17 C -0.027 4.027 18 C -0.137 4.137 19 C -0.034 4.034 20 N -0.171 5.171 21 C -0.067 4.067 22 C 0.357 3.643 23 O -0.344 6.344 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.199 0.801 31 H 0.230 0.770 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.239 8.187 13.958 18.158 hybrid contribution 0.766 0.141 -1.131 1.374 sum -7.472 8.328 12.827 17.021 Atomic orbital electron populations 1.21697 0.95941 1.01517 1.00114 1.21806 0.94679 0.97610 1.02595 1.19013 0.94902 0.90488 0.77926 0.94066 1.21357 0.91137 1.39878 1.06245 0.93724 1.25581 1.03231 0.93938 0.94679 1.69939 1.36833 1.37842 1.09712 0.85415 0.79319 0.78329 0.78061 1.20192 1.19733 1.19420 1.47058 1.45750 1.27513 1.09598 1.18724 0.76787 0.79283 0.89546 1.90708 1.47785 1.54086 1.44539 1.21572 1.04671 1.01251 0.93277 1.21774 0.92276 0.93586 0.95112 1.23078 0.97498 1.00048 0.93065 1.24052 0.89343 0.87371 1.02680 1.66880 1.19015 1.25289 1.05957 1.21338 0.98015 0.95682 0.91641 1.18560 0.79087 0.83777 0.82885 1.90703 1.33587 1.26778 1.83282 0.94788 0.93301 0.91480 0.89110 0.94276 0.91938 0.80132 0.77015 0.76533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 9.80 71.98 0.71 -4.96 16 2 C -0.13 -6.51 5.20 30.59 0.16 -6.35 16 3 C 0.28 14.82 2.17 44.24 0.10 14.91 16 4 H 0.04 2.42 7.58 -2.39 -0.02 2.40 16 5 C -0.55 -31.97 8.13 25.60 0.21 -31.76 16 6 H 0.04 2.69 7.70 -2.91 -0.02 2.67 16 7 C 0.03 1.51 5.29 84.65 0.45 1.96 16 8 N -0.91 -51.70 11.29 21.45 0.24 -51.46 16 9 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 N -0.56 -26.51 1.96 -743.89 -1.46 -27.97 16 14 C 0.57 23.66 8.02 86.79 0.70 24.35 16 15 O -0.50 -22.43 17.43 -3.52 -0.06 -22.49 16 16 C -0.20 -6.33 6.42 -19.99 -0.13 -6.45 16 17 C 0.00 -0.04 10.22 22.61 0.23 0.19 16 18 C -0.12 -1.23 10.12 22.48 0.23 -1.01 16 19 C 0.12 1.88 11.16 84.74 0.95 2.83 16 20 N -0.46 -13.44 10.38 -183.93 -1.91 -15.35 16 21 C 0.08 2.70 7.58 42.42 0.32 3.02 16 22 C 0.57 26.19 7.31 86.99 0.64 26.83 16 23 O -0.47 -24.63 16.08 -3.41 -0.05 -24.68 16 24 H 0.03 1.35 7.75 -2.39 -0.02 1.33 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.09 4.99 5.95 -2.39 -0.01 4.98 16 28 H 0.04 2.06 6.66 -2.39 -0.02 2.04 16 29 H 0.27 14.48 8.31 -92.71 -0.77 13.70 16 30 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.21 -0.20 8.06 -2.91 -0.02 -0.22 16 32 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -76.20 283.83 4.48 -71.72 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: 1.15 Total: -0.48 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 4.54 Total: 23.57 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -3.13 Total: -94.78 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.12 Total: -47.17 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.20 4.48 -71.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.711 kcal (2) G-P(sol) polarization free energy of solvation -76.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds