Wall clock time and date at job start Mon Mar 30 2020 04:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47269 * 17.67650 * 3 2 1 5 5 C 1.36827 * 119.99952 * 274.30910 * 4 3 2 6 6 H 1.08001 * 119.99510 * 6.89585 * 5 4 3 7 7 C 1.38854 * 120.00087 * 186.89335 * 5 4 3 8 8 N 1.31536 * 119.99688 * 343.36576 * 7 5 4 9 9 Si 1.86794 * 119.99980 * 163.36969 * 7 5 4 10 10 H 1.48502 * 109.47292 * 59.99763 * 9 7 5 11 11 H 1.48499 * 109.47157 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47206 * 300.00226 * 9 7 5 13 13 C 1.38663 * 119.99978 * 94.30946 * 4 3 2 14 14 C 1.38768 * 120.20789 * 89.72786 * 13 4 3 15 15 C 1.38818 * 119.85337 * 179.74742 * 14 13 4 16 16 N 1.39094 * 119.86916 * 180.23058 * 15 14 13 17 17 C 1.39448 * 120.27033 * 0.52151 * 15 14 13 18 18 C 1.36503 * 120.42283 * 359.73137 * 17 15 14 19 19 C 1.39847 * 120.14198 * 0.02562 * 18 17 15 20 20 C 1.47158 * 120.13535 * 179.97438 * 19 18 17 21 21 N 1.34772 * 120.00136 * 0.02562 * 20 19 18 22 22 O 1.21647 * 119.99961 * 180.02562 * 20 19 18 23 23 H 1.08993 * 109.46701 * 137.67622 * 3 2 1 24 24 H 1.09001 * 109.47040 * 257.67586 * 3 2 1 25 25 H 0.97001 * 119.99783 * 179.97438 * 8 7 5 26 26 H 1.08004 * 120.07601 * 359.97055 * 14 13 4 27 27 H 0.96997 * 120.00294 * 180.29396 * 16 15 14 28 28 H 0.97008 * 119.99727 * 0.29203 * 16 15 14 29 29 H 1.07993 * 119.78634 * 179.70355 * 17 15 14 30 30 H 1.08005 * 119.92663 * 179.97438 * 18 17 15 31 31 H 0.97002 * 120.00208 * 359.97438 * 21 20 19 32 32 H 0.96998 * 120.00224 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3151 -0.4194 5 6 3.2415 -2.3167 0.5016 6 1 2.8918 -2.1743 1.5134 7 6 3.8378 -3.5159 0.1353 8 7 3.9661 -3.8250 -1.1368 9 14 4.4577 -4.6903 1.4489 10 1 3.3264 -5.1029 2.3179 11 1 5.0474 -5.8900 0.8021 12 1 5.4916 -4.0121 2.2713 13 6 3.4133 -1.5455 -1.7497 14 6 4.6984 -1.3032 -2.2138 15 6 5.0083 -1.5414 -3.5459 16 7 6.2976 -1.3032 -4.0104 17 6 4.0309 -2.0128 -4.4216 18 6 2.7619 -2.2500 -3.9781 19 6 2.4317 -2.0209 -2.6386 20 6 1.0635 -2.2762 -2.1608 21 7 0.1257 -2.7322 -3.0146 22 8 0.7789 -2.0756 -0.9953 23 1 2.9709 0.7606 -0.6919 24 1 2.9712 0.2202 1.0040 25 1 4.3830 -4.6627 -1.3928 26 1 5.4567 -0.9335 -1.5395 27 1 6.5152 -1.4649 -4.9417 28 1 6.9791 -0.9753 -3.4029 29 1 4.2793 -2.1909 -5.4573 30 1 2.0109 -2.6147 -4.6634 31 1 0.3524 -2.8918 -3.9441 32 1 -0.7763 -2.9001 -2.6997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070233430.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:14 Heat of formation + Delta-G solvation = 69.620841 kcal Electronic energy + Delta-G solvation = -19944.791497 eV Core-core repulsion = 16907.219558 eV Total energy + Delta-G solvation = -3037.571939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.19391 -37.27884 -36.22060 -34.69507 -33.37528 -32.25561 -31.39290 -29.27661 -27.84347 -26.59721 -23.75901 -22.23320 -20.88447 -19.51990 -17.76260 -16.98794 -16.71631 -16.19103 -15.58623 -15.24974 -14.76143 -14.06150 -13.88002 -13.63776 -13.23180 -12.97874 -12.58106 -12.46589 -12.12625 -11.78102 -11.70466 -11.23478 -10.97152 -10.80853 -10.60548 -10.51515 -10.02522 -9.82372 -9.51758 -9.05261 -8.56636 -8.53219 -7.68199 -7.19666 -6.63572 -5.67014 -3.21633 2.29019 2.64948 3.40195 3.44694 3.45217 3.93849 4.04245 4.20648 4.49321 4.54238 4.60515 5.18788 5.22400 5.42871 5.51968 5.75965 5.97296 6.12873 6.20618 6.34891 6.53106 6.69541 6.84503 7.23322 7.33390 7.51166 7.72048 7.74579 7.87028 8.12919 8.31192 8.36118 8.45536 8.90498 9.21650 9.52709 9.69500 10.09261 11.23165 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.012747 C = 0.008956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.730897 B = 2196.100335 C = 3125.815084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.207 3.793 3 C 0.242 3.758 4 N -0.543 5.543 5 C -0.241 4.241 6 H 0.083 0.917 7 C 0.002 3.998 8 N -0.882 5.882 9 Si 0.910 3.090 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.283 1.283 13 C 0.387 3.613 14 C -0.201 4.201 15 C 0.234 3.766 16 N -0.884 5.884 17 C -0.234 4.234 18 C -0.041 4.041 19 C -0.192 4.192 20 C 0.560 3.440 21 N -0.875 5.875 22 O -0.507 6.507 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.257 0.743 26 H 0.109 0.891 27 H 0.388 0.612 28 H 0.391 0.609 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.387 0.613 32 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 5.079 -7.520 9.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.112 4.112 3 C 0.112 3.888 4 N -0.259 5.259 5 C -0.368 4.368 6 H 0.101 0.899 7 C -0.196 4.196 8 N -0.524 5.524 9 Si 0.740 3.260 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.290 3.710 14 C -0.226 4.226 15 C 0.130 3.870 16 N -0.423 5.423 17 C -0.256 4.256 18 C -0.061 4.061 19 C -0.200 4.200 20 C 0.348 3.652 21 N -0.440 5.440 22 O -0.381 6.381 23 H 0.103 0.897 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.127 0.873 27 H 0.215 0.785 28 H 0.219 0.781 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.215 0.785 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.215 5.050 -6.686 8.666 hybrid contribution 0.768 -1.544 -0.061 1.725 sum 2.983 3.506 -6.747 8.168 Atomic orbital electron populations 1.80815 1.14239 1.10279 1.09423 1.30798 0.96726 0.91243 0.92470 1.18379 0.80701 0.88137 1.01540 1.41359 1.72959 1.08461 1.03083 1.19213 1.32779 0.94182 0.90663 0.89872 1.24810 1.00884 0.97676 0.96261 1.69753 1.46206 1.23136 1.13322 0.86215 0.78852 0.80008 0.80895 1.21203 1.21813 1.20955 1.16452 0.89042 0.82662 0.82862 1.20588 0.97151 1.11865 0.92977 1.17558 0.84343 0.92500 0.92608 1.42283 1.09777 1.77485 1.12780 1.19728 0.93897 1.13876 0.98143 1.20274 0.95288 0.96400 0.94142 1.19889 0.94035 1.12138 0.93898 1.18253 0.85023 0.76407 0.85489 1.43868 1.13660 1.73147 1.13296 1.90834 1.80910 1.49990 1.16387 0.89670 0.88732 0.93133 0.87321 0.78500 0.78143 0.88173 0.88326 0.78471 0.78316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.17 17.23 42.15 0.73 -10.44 16 2 C 0.21 4.54 12.74 -20.76 -0.26 4.28 16 3 C 0.24 4.62 6.14 -6.83 -0.04 4.58 16 4 N -0.54 -12.58 1.49 -116.03 -0.17 -12.75 16 5 C -0.24 -6.26 8.84 -15.09 -0.13 -6.39 16 6 H 0.08 2.16 7.88 -52.49 -0.41 1.75 16 7 C 0.00 0.06 5.37 -17.45 -0.09 -0.03 16 8 N -0.88 -23.68 9.64 55.49 0.54 -23.14 16 9 Si 0.91 21.53 29.58 -169.99 -5.03 16.50 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.39 8.74 2.80 -83.65 -0.23 8.50 16 14 C -0.20 -4.09 9.06 -39.17 -0.35 -4.44 16 15 C 0.23 4.19 6.75 -83.90 -0.57 3.62 16 16 N -0.88 -11.93 9.06 32.38 0.29 -11.64 16 17 C -0.23 -4.12 9.81 -39.76 -0.39 -4.51 16 18 C -0.04 -0.77 9.47 -39.61 -0.38 -1.14 16 19 C -0.19 -4.23 4.99 -104.75 -0.52 -4.75 16 20 C 0.56 12.82 8.00 -12.64 -0.10 12.72 16 21 N -0.87 -15.74 8.82 30.37 0.27 -15.47 16 22 O -0.51 -13.32 10.45 5.24 0.05 -13.27 16 23 H 0.09 1.35 8.01 -51.93 -0.42 0.93 16 24 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 27 H 0.39 4.29 8.83 -40.82 -0.36 3.93 16 28 H 0.39 4.70 8.83 -40.82 -0.36 4.34 16 29 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.10 1.55 6.38 -52.48 -0.34 1.21 16 31 H 0.39 5.72 6.84 -40.82 -0.28 5.44 16 32 H 0.39 6.53 8.93 -40.82 -0.36 6.17 16 LS Contribution 279.77 15.07 4.22 4.22 Total: -1.00 -33.40 279.77 -5.11 -38.51 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -2.93 Total: 15.05 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: -3.08 Total: 12.44 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: 1.65 Total: -73.45 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.05 Total: -13.27 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.40 -5.11 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070233430.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.132 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds