Wall clock time and date at job start Mon Mar 30 2020 04:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47269 * 17.67650 * 3 2 1 5 5 C 1.36827 * 119.99952 * 274.30910 * 4 3 2 6 6 H 1.08001 * 119.99510 * 6.89585 * 5 4 3 7 7 C 1.38854 * 120.00087 * 186.89335 * 5 4 3 8 8 N 1.31536 * 119.99688 * 343.36576 * 7 5 4 9 9 Si 1.86794 * 119.99980 * 163.36969 * 7 5 4 10 10 H 1.48502 * 109.47292 * 59.99763 * 9 7 5 11 11 H 1.48499 * 109.47157 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47206 * 300.00226 * 9 7 5 13 13 C 1.38663 * 119.99978 * 94.30946 * 4 3 2 14 14 C 1.38768 * 120.20789 * 89.72786 * 13 4 3 15 15 C 1.38818 * 119.85337 * 179.74742 * 14 13 4 16 16 N 1.39094 * 119.86916 * 180.23058 * 15 14 13 17 17 C 1.39448 * 120.27033 * 0.52151 * 15 14 13 18 18 C 1.36503 * 120.42283 * 359.73137 * 17 15 14 19 19 C 1.39847 * 120.14198 * 0.02562 * 18 17 15 20 20 C 1.47158 * 120.13535 * 179.97438 * 19 18 17 21 21 N 1.34772 * 120.00136 * 0.02562 * 20 19 18 22 22 O 1.21647 * 119.99961 * 180.02562 * 20 19 18 23 23 H 1.08993 * 109.46701 * 137.67622 * 3 2 1 24 24 H 1.09001 * 109.47040 * 257.67586 * 3 2 1 25 25 H 0.97001 * 119.99783 * 179.97438 * 8 7 5 26 26 H 1.08004 * 120.07601 * 359.97055 * 14 13 4 27 27 H 0.96997 * 120.00294 * 180.29396 * 16 15 14 28 28 H 0.97008 * 119.99727 * 0.29203 * 16 15 14 29 29 H 1.07993 * 119.78634 * 179.70355 * 17 15 14 30 30 H 1.08005 * 119.92663 * 179.97438 * 18 17 15 31 31 H 0.97002 * 120.00208 * 359.97438 * 21 20 19 32 32 H 0.96998 * 120.00224 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3151 -0.4194 5 6 3.2415 -2.3167 0.5016 6 1 2.8918 -2.1743 1.5134 7 6 3.8378 -3.5159 0.1353 8 7 3.9661 -3.8250 -1.1368 9 14 4.4577 -4.6903 1.4489 10 1 3.3264 -5.1029 2.3179 11 1 5.0474 -5.8900 0.8021 12 1 5.4916 -4.0121 2.2713 13 6 3.4133 -1.5455 -1.7497 14 6 4.6984 -1.3032 -2.2138 15 6 5.0083 -1.5414 -3.5459 16 7 6.2976 -1.3032 -4.0104 17 6 4.0309 -2.0128 -4.4216 18 6 2.7619 -2.2500 -3.9781 19 6 2.4317 -2.0209 -2.6386 20 6 1.0635 -2.2762 -2.1608 21 7 0.1257 -2.7322 -3.0146 22 8 0.7789 -2.0756 -0.9953 23 1 2.9709 0.7606 -0.6919 24 1 2.9712 0.2202 1.0040 25 1 4.3830 -4.6627 -1.3928 26 1 5.4567 -0.9335 -1.5395 27 1 6.5152 -1.4649 -4.9417 28 1 6.9791 -0.9753 -3.4029 29 1 4.2793 -2.1909 -5.4573 30 1 2.0109 -2.6147 -4.6634 31 1 0.3524 -2.8918 -3.9441 32 1 -0.7763 -2.9001 -2.6997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070233430.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:14 Heat of formation + Delta-G solvation = 44.505360 kcal Electronic energy + Delta-G solvation = -19945.880586 eV Core-core repulsion = 16907.219558 eV Total energy + Delta-G solvation = -3038.661028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.76039 -38.85888 -37.83119 -36.39486 -34.86405 -33.80148 -33.22829 -30.77700 -29.26278 -28.32119 -25.48297 -23.71931 -22.48669 -21.08994 -19.42127 -18.61829 -18.20104 -17.62610 -17.10982 -16.73904 -16.47693 -15.72615 -15.57458 -15.22218 -14.92083 -14.54857 -14.20130 -13.94212 -13.60265 -13.44473 -13.25679 -13.03898 -12.77872 -12.58135 -12.37051 -12.15889 -11.76351 -11.50886 -10.89469 -10.87258 -10.32136 -10.17458 -9.23802 -8.97919 -8.03126 -7.53061 -5.13529 0.76968 1.17124 1.51636 1.53193 1.57350 2.24116 2.37130 2.59156 2.67530 3.11027 3.29227 3.40034 3.65436 3.76845 3.91066 4.38885 4.60711 4.70146 4.75474 4.91282 5.08636 5.28480 5.42635 5.71646 5.81023 5.89542 6.09354 6.23985 6.31829 6.40929 6.92518 6.97792 7.22972 7.29321 7.34727 7.90735 7.93496 8.25511 9.26487 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.012747 C = 0.008956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.730897 B = 2196.100335 C = 3125.815084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.220 3.780 3 C 0.235 3.765 4 N -0.552 5.552 5 C -0.244 4.244 6 H 0.072 0.928 7 C -0.038 4.038 8 N -0.891 5.891 9 Si 0.957 3.043 10 H -0.299 1.299 11 H -0.299 1.299 12 H -0.273 1.273 13 C 0.366 3.634 14 C -0.219 4.219 15 C 0.245 3.755 16 N -0.865 5.865 17 C -0.235 4.235 18 C -0.040 4.040 19 C -0.224 4.224 20 C 0.548 3.452 21 N -0.857 5.857 22 O -0.552 6.552 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.245 0.755 26 H 0.107 0.893 27 H 0.404 0.596 28 H 0.401 0.599 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.404 0.596 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 5.426 -9.319 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.098 4.098 3 C 0.106 3.894 4 N -0.267 5.267 5 C -0.373 4.373 6 H 0.090 0.910 7 C -0.235 4.235 8 N -0.535 5.535 9 Si 0.787 3.213 10 H -0.227 1.227 11 H -0.225 1.225 12 H -0.199 1.199 13 C 0.269 3.731 14 C -0.244 4.244 15 C 0.137 3.863 16 N -0.405 5.405 17 C -0.257 4.257 18 C -0.060 4.060 19 C -0.232 4.232 20 C 0.337 3.663 21 N -0.423 5.423 22 O -0.431 6.431 23 H 0.138 0.862 24 H 0.138 0.862 25 H 0.055 0.945 26 H 0.125 0.875 27 H 0.234 0.766 28 H 0.230 0.770 29 H 0.152 0.848 30 H 0.145 0.855 31 H 0.235 0.765 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.666 5.420 -8.557 10.772 hybrid contribution 0.360 -1.608 0.373 1.689 sum 4.027 3.813 -8.184 9.886 Atomic orbital electron populations 1.80788 1.15644 1.11685 1.11040 1.31395 0.97314 0.89974 0.91133 1.18913 0.78875 0.87663 1.03929 1.41461 1.72928 1.09013 1.03345 1.19261 1.32178 0.94877 0.90935 0.90994 1.25288 1.01879 0.98799 0.97532 1.69963 1.46874 1.22753 1.13911 0.85510 0.78024 0.78536 0.79226 1.22666 1.22501 1.19877 1.16751 0.89950 0.83617 0.82737 1.20583 0.96443 1.13175 0.94227 1.17673 0.85941 0.90779 0.91858 1.42229 1.08391 1.75944 1.13925 1.20118 0.93229 1.12666 0.99697 1.20605 0.96661 0.95385 0.93361 1.19996 0.93699 1.14013 0.95482 1.18651 0.86101 0.76141 0.85409 1.43632 1.13242 1.71682 1.13726 1.90798 1.81754 1.52268 1.18231 0.86196 0.86197 0.94454 0.87529 0.76607 0.77043 0.84788 0.85533 0.76509 0.77690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.76 17.23 20.01 0.34 -24.42 16 2 C 0.22 9.70 12.74 89.44 1.14 10.84 16 3 C 0.24 8.79 6.14 84.58 0.52 9.31 16 4 N -0.55 -25.40 1.49 -520.99 -0.77 -26.17 16 5 C -0.24 -12.73 8.84 84.06 0.74 -11.99 16 6 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 7 C -0.04 -2.03 5.37 84.88 0.46 -1.57 16 8 N -0.89 -47.73 9.64 21.65 0.21 -47.52 16 9 Si 0.96 44.60 29.58 68.60 2.03 46.63 16 10 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 11 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 C 0.37 16.20 2.80 38.79 0.11 16.31 16 14 C -0.22 -8.57 9.06 22.54 0.20 -8.37 16 15 C 0.24 8.01 6.75 38.42 0.26 8.27 16 16 N -0.87 -20.16 9.06 -51.45 -0.47 -20.62 16 17 C -0.23 -7.42 9.81 22.16 0.22 -7.20 16 18 C -0.04 -1.40 9.47 22.25 0.21 -1.19 16 19 C -0.22 -9.64 4.99 -19.94 -0.10 -9.74 16 20 C 0.55 24.95 8.00 86.59 0.69 25.64 16 21 N -0.86 -30.04 8.82 -176.06 -1.55 -31.59 16 22 O -0.55 -29.41 10.45 -4.18 -0.04 -29.46 16 23 H 0.12 3.59 8.01 -2.39 -0.02 3.57 16 24 H 0.12 3.81 8.07 -2.39 -0.02 3.79 16 25 H 0.24 13.26 8.31 -92.71 -0.77 12.49 16 26 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 27 H 0.40 7.14 8.83 -92.71 -0.82 6.33 16 28 H 0.40 8.27 8.83 -92.70 -0.82 7.45 16 29 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.13 3.56 6.38 -2.91 -0.02 3.54 16 31 H 0.40 11.14 6.84 -92.71 -0.63 10.51 16 32 H 0.39 13.03 8.93 -92.71 -0.83 12.20 16 Total: -1.00 -72.68 279.77 2.32 -70.36 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -1.88 Total: 32.49 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 4.45 Total: 30.31 kcal Atomic # 7 Polarization: -148.09 SS G_CDS: -2.24 Total: -150.33 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.04 Total: -29.46 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.68 2.32 -70.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070233430.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.861 kcal (2) G-P(sol) polarization free energy of solvation -72.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds