Wall clock time and date at job start Mon Mar 30 2020 05:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86795 * 119.99961 * 2 1 4 4 H 1.48499 * 109.47369 * 270.19795 * 3 2 1 5 5 H 1.48494 * 109.47320 * 30.20028 * 3 2 1 6 6 H 1.48506 * 109.47389 * 150.20006 * 3 2 1 7 7 C 1.39906 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00487 * 345.65753 * 7 2 1 9 9 C 1.41155 * 119.99395 * 165.66231 * 7 2 1 10 10 C 1.40863 * 120.16766 * 328.72659 * 9 7 2 11 11 C 1.36379 * 119.82981 * 179.97438 * 10 9 7 12 12 C 1.39482 * 120.16857 * 0.02562 * 11 10 9 13 13 N 1.39231 * 119.83253 * 179.97438 * 12 11 10 14 14 C 1.45752 * 117.94881 * 277.59211 * 13 12 11 15 15 C 1.52921 * 110.48872 * 199.36051 * 14 13 12 16 16 C 1.53342 * 108.67257 * 309.24727 * 15 14 13 17 17 C 1.53067 * 108.42819 * 67.53126 * 16 15 14 18 18 H 1.08996 * 109.40330 * 71.23224 * 17 16 15 19 19 N 1.46907 * 109.32875 * 191.01836 * 17 16 15 20 20 C 1.33352 * 117.94640 * 97.85854 * 13 12 11 21 21 O 1.21289 * 118.24485 * 357.50956 * 20 13 12 22 22 C 1.39482 * 120.33122 * 0.26899 * 12 11 10 23 23 C 1.36369 * 120.16852 * 359.44470 * 22 12 11 24 24 H 0.97000 * 119.99988 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.08803 * 359.97006 * 10 9 7 26 26 H 1.07997 * 119.91492 * 179.97438 * 11 10 9 27 27 H 1.08999 * 109.30041 * 319.66925 * 14 13 12 28 28 H 1.08997 * 109.30238 * 79.04960 * 14 13 12 29 29 H 1.08998 * 109.60664 * 189.48285 * 15 14 13 30 30 H 1.09000 * 109.73778 * 69.07758 * 15 14 13 31 31 H 1.09004 * 109.66913 * 307.79268 * 16 15 14 32 32 H 1.09001 * 109.70317 * 187.28714 * 16 15 14 33 33 H 1.00895 * 110.99565 * 180.38699 * 19 17 16 34 34 H 1.00899 * 110.99909 * 304.33369 * 19 17 16 35 35 H 1.08005 * 119.91547 * 179.70710 * 22 12 11 36 36 H 1.07998 * 120.08950 * 180.27402 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4861 2.0488 -1.4000 5 1 1.4424 2.6514 0.7042 6 1 3.5425 1.4390 0.6958 7 6 2.0082 -1.2117 0.0005 8 1 1.4935 -2.1323 0.2326 9 6 3.3868 -1.2308 -0.3022 10 6 3.9285 -0.2861 -1.1958 11 6 5.2615 -0.3106 -1.4830 12 6 6.0878 -1.2680 -0.8948 13 7 7.4476 -1.2869 -1.1933 14 6 7.8689 -1.9557 -2.4179 15 6 9.3573 -2.3008 -2.3544 16 6 10.1364 -1.0423 -1.9535 17 6 9.7755 -0.6897 -0.5084 18 1 10.2202 -1.4224 0.1649 19 7 10.2969 0.6461 -0.1892 20 6 8.2834 -0.6966 -0.3382 21 8 7.8135 -0.1355 0.6289 22 6 5.5576 -2.2104 -0.0137 23 6 4.2278 -2.1949 0.2877 24 1 -0.4850 0.8400 -0.0004 25 1 3.2898 0.4555 -1.6524 26 1 5.6781 0.4127 -2.1682 27 1 7.2918 -2.8716 -2.5450 28 1 7.6875 -1.2983 -3.2682 29 1 9.6951 -2.6442 -3.3322 30 1 9.5223 -3.0841 -1.6147 31 1 9.8642 -0.2171 -2.6117 32 1 11.2069 -1.2335 -2.0283 33 1 10.0781 0.9018 0.7620 34 1 11.2905 0.6962 -0.3575 35 1 6.2028 -2.9517 0.4343 36 1 3.8194 -2.9224 0.9734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070495410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:27 Heat of formation + Delta-G solvation = -32.968207 kcal Electronic energy + Delta-G solvation = -19408.235499 eV Core-core repulsion = 16469.755309 eV Total energy + Delta-G solvation = -2938.480191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85393 -39.50291 -37.47636 -36.48314 -35.20687 -33.01157 -31.81675 -31.15152 -28.86809 -27.01477 -24.64125 -23.77750 -23.20272 -22.33351 -19.73197 -19.46014 -18.45947 -17.79934 -17.30664 -16.88266 -16.07474 -15.90105 -15.74753 -15.48761 -15.05093 -14.88053 -14.49260 -14.34342 -14.24893 -14.11706 -13.69568 -13.16730 -12.79335 -12.69378 -12.28906 -12.24296 -12.14031 -11.94448 -11.85157 -11.62335 -11.09079 -10.73194 -9.78281 -9.74693 -9.68450 -9.39872 -8.96333 -6.56302 0.57661 0.80140 1.20115 1.33526 1.43649 1.64354 2.06541 2.13126 2.50022 3.36296 3.50391 3.63854 3.86052 3.91702 4.14437 4.17191 4.19310 4.30922 4.53693 4.56497 4.74370 4.87170 4.90360 4.95151 5.02421 5.04619 5.11918 5.28333 5.33917 5.52020 5.79780 5.81936 5.89936 6.01517 6.16437 6.30014 6.52542 6.58205 6.66908 6.76089 7.32417 8.11711 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033378 B = 0.005689 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.682436 B = 4920.712924 C = 5256.679365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.055 3.945 3 Si 0.960 3.040 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.475 4.475 8 H 0.066 0.934 9 C 0.078 3.922 10 C -0.245 4.245 11 C -0.070 4.070 12 C 0.006 3.994 13 N -0.539 5.539 14 C 0.103 3.897 15 C -0.123 4.123 16 C -0.110 4.110 17 C 0.088 3.912 18 H 0.081 0.919 19 N -0.843 5.843 20 C 0.505 3.495 21 O -0.593 6.593 22 C -0.067 4.067 23 C -0.210 4.210 24 H 0.296 0.704 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.348 0.652 34 H 0.365 0.635 35 H 0.115 0.885 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.032 -2.620 -6.291 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.161 4.161 3 Si 0.785 3.215 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.505 4.505 8 H 0.084 0.916 9 C 0.076 3.924 10 C -0.265 4.265 11 C -0.090 4.090 12 C -0.085 4.085 13 N -0.267 5.267 14 C -0.018 4.018 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.026 4.026 18 H 0.099 0.901 19 N -0.378 5.378 20 C 0.294 3.706 21 O -0.472 6.472 22 C -0.086 4.086 23 C -0.230 4.230 24 H 0.106 0.894 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.133 0.867 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 20.064 -1.997 -6.381 21.149 hybrid contribution -0.099 0.161 1.029 1.047 sum 19.965 -1.837 -5.352 20.751 Atomic orbital electron populations 1.69691 1.08723 1.31517 1.36935 1.26654 0.95310 1.03592 0.90496 0.85608 0.78794 0.77360 0.79751 1.17998 1.19951 1.19460 1.19469 0.92934 0.95442 1.42623 0.91619 1.17937 0.93051 0.91857 0.89593 1.20837 0.95778 1.04961 1.04927 1.20648 0.93248 0.96447 0.98623 1.17088 0.83836 1.01110 1.06435 1.44566 1.03834 1.54625 1.23647 1.21784 0.97632 0.97505 0.84888 1.21895 0.91337 0.97739 1.05167 1.21741 1.02446 0.98268 0.92370 1.21219 0.88415 0.92522 1.00436 0.90146 1.58403 1.21084 1.25839 1.32474 1.21030 0.90561 0.77170 0.81795 1.90684 1.78619 1.45550 1.32394 1.20684 0.94749 0.97175 0.96034 1.20865 0.93335 1.04012 1.04801 0.89364 0.87870 0.87047 0.90285 0.91251 0.86146 0.90385 0.90970 0.87435 0.83789 0.81886 0.86675 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.72 13.93 21.82 0.30 -46.41 16 2 C 0.05 3.02 5.44 85.24 0.46 3.49 16 3 Si 0.96 45.70 24.47 68.60 1.68 47.38 16 4 H -0.25 -11.38 6.51 99.48 0.65 -10.73 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -13.96 6.92 99.48 0.69 -13.27 16 7 C -0.48 -27.23 9.58 23.39 0.22 -27.01 16 8 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 9 C 0.08 4.17 5.11 -21.27 -0.11 4.06 16 10 C -0.25 -12.32 7.10 22.48 0.16 -12.16 16 11 C -0.07 -3.18 9.90 22.14 0.22 -2.97 16 12 C 0.01 0.27 4.00 38.57 0.15 0.42 16 13 N -0.54 -18.09 2.81 -635.33 -1.79 -19.88 16 14 C 0.10 2.34 6.34 86.49 0.55 2.89 16 15 C -0.12 -1.68 6.02 30.68 0.18 -1.50 16 16 C -0.11 -1.61 5.56 30.73 0.17 -1.44 16 17 C 0.09 1.96 3.46 44.03 0.15 2.11 16 18 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 19 N -0.84 -18.04 9.16 -172.39 -1.58 -19.62 16 20 C 0.51 17.49 7.16 87.71 0.63 18.12 16 21 O -0.59 -26.93 16.05 -3.06 -0.05 -26.98 16 22 C -0.07 -2.93 9.89 22.13 0.22 -2.71 16 23 C -0.21 -10.21 9.74 22.48 0.22 -10.00 16 24 H 0.30 14.73 8.30 -92.71 -0.77 13.97 16 25 H 0.10 5.14 4.49 -2.91 -0.01 5.12 16 26 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 27 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 31 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.35 8.39 8.56 -89.70 -0.77 7.63 16 34 H 0.36 4.93 8.99 -89.69 -0.81 4.13 16 35 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 36 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -71.32 295.74 1.26 -70.06 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.54 Total: 22.14 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.24 Total: -26.69 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -3.06 Total: -85.91 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.68 Total: 47.38 kcal Total: -71.32 1.26 -70.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070495410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.092 kcal (2) G-P(sol) polarization free energy of solvation -71.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds