Wall clock time and date at job start Mon Mar 30 2020 04:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 110.53467 * 2 1 4 4 C 1.38239 * 119.99760 * 122.55610 * 3 2 1 5 5 C 1.38241 * 119.99782 * 179.79180 * 4 3 2 6 6 C 1.38232 * 119.99777 * 0.45399 * 5 4 3 7 7 C 1.38241 * 120.00376 * 359.77912 * 6 5 4 8 8 C 1.38233 * 120.00015 * 302.82765 * 3 2 1 9 9 C 1.51581 * 110.73278 * 237.07923 * 2 1 3 10 10 O 1.21237 * 127.15855 * 61.35897 * 9 2 1 11 11 N 1.34772 * 105.68356 * 241.41135 * 9 2 1 12 12 C 1.33791 * 111.64333 * 0.02562 * 11 9 2 13 13 O 1.21545 * 123.76790 * 180.02562 * 12 11 9 14 14 N 1.34522 * 112.45891 * 0.02562 * 12 11 9 15 15 C 1.37152 * 126.68946 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99982 * 210.43604 * 15 14 12 17 17 C 1.38909 * 120.00011 * 30.42814 * 15 14 12 18 18 N 1.31456 * 119.99922 * 21.13096 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 201.13004 * 17 15 14 20 20 H 1.48506 * 109.47107 * 59.99737 * 19 17 15 21 21 H 1.48490 * 109.47305 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47070 * 300.00284 * 19 17 15 23 23 H 1.08996 * 109.46708 * 59.30213 * 1 2 3 24 24 H 1.09003 * 109.46884 * 179.29734 * 1 2 3 25 25 H 1.09002 * 109.47175 * 299.30019 * 1 2 3 26 26 H 1.08002 * 120.00282 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.99849 * 180.25628 * 5 4 3 28 28 H 1.08004 * 120.00290 * 179.78961 * 6 5 4 29 29 H 1.07993 * 120.00369 * 179.97438 * 7 6 5 30 30 H 1.07995 * 120.00239 * 359.97438 * 8 3 2 31 31 H 0.97000 * 124.17222 * 179.97438 * 11 9 2 32 32 H 0.96996 * 119.99653 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.9044 1.8325 1.0091 5 6 3.3928 3.1257 1.0068 6 6 3.0279 4.0005 0.0005 7 6 2.1783 3.5807 -1.0060 8 6 1.6934 2.2861 -1.0060 9 6 2.0667 -0.7705 -1.1900 10 8 1.8928 -0.5200 -2.3634 11 7 2.7763 -1.7926 -0.6723 12 6 2.7623 -1.7754 0.6654 13 8 3.3322 -2.5960 1.3576 14 7 2.0470 -0.7484 1.1587 15 6 1.8410 -0.4544 2.4824 16 1 0.9265 0.0296 2.7920 17 6 2.8084 -0.7792 3.4248 18 7 4.0532 -0.9724 3.0491 19 14 2.3404 -0.9416 5.2259 20 1 1.3190 -2.0088 5.3777 21 1 3.5446 -1.2930 6.0205 22 1 1.7853 0.3474 5.7112 23 1 -0.3632 0.5246 -0.8837 24 1 -0.3633 -1.0276 -0.0126 25 1 -0.3633 0.5029 0.8962 26 1 3.1860 1.1503 1.7977 27 1 4.0568 3.4536 1.7928 28 1 3.4067 5.0119 0.0005 29 1 1.8929 4.2641 -1.7919 30 1 1.0295 1.9582 -1.7921 31 1 3.2394 -2.4588 -1.2040 32 1 4.7286 -1.1996 3.7072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070509629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:38 Heat of formation + Delta-G solvation = 0.177021 kcal Electronic energy + Delta-G solvation = -20074.060397 eV Core-core repulsion = 17001.184397 eV Total energy + Delta-G solvation = -3072.876000 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48721 -38.43326 -37.57492 -35.16036 -34.07090 -32.48471 -30.63180 -30.11415 -28.72511 -25.63727 -23.94887 -22.18418 -21.92361 -20.93767 -19.62806 -17.44335 -16.99284 -16.48786 -15.34701 -15.20730 -15.00984 -14.58425 -14.15118 -13.97100 -13.64213 -13.30310 -13.08306 -12.67907 -12.55425 -12.02825 -11.97988 -11.74174 -11.45214 -11.04185 -10.90282 -10.62720 -10.40910 -10.37338 -9.82314 -9.25949 -9.08348 -8.81567 -8.35732 -8.20805 -7.65913 -6.33772 -4.01954 1.77835 1.99271 2.51420 3.19979 3.27932 3.28347 3.56761 4.01548 4.32572 4.46441 4.61839 4.92958 5.09598 5.13450 5.41370 5.46970 5.60673 5.70742 5.95441 6.08365 6.12236 6.24621 6.42328 6.48136 6.58509 6.70056 6.90012 6.95833 7.18331 7.30346 7.41944 7.64261 8.00512 8.22271 8.66094 8.92439 9.26292 10.00406 10.71983 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.010456 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.597113 B = 2677.372513 C = 3534.322980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.144 3.856 3 C -0.083 4.083 4 C -0.079 4.079 5 C -0.133 4.133 6 C -0.123 4.123 7 C -0.139 4.139 8 C -0.103 4.103 9 C 0.531 3.469 10 O -0.505 6.505 11 N -0.682 5.682 12 C 0.642 3.358 13 O -0.531 6.531 14 N -0.440 5.440 15 C -0.324 4.324 16 H 0.096 0.904 17 C 0.052 3.948 18 N -0.812 5.812 19 Si 0.920 3.080 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.172 0.828 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.415 0.585 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 6.165 -4.264 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.085 4.085 4 C -0.096 4.096 5 C -0.151 4.151 6 C -0.141 4.141 7 C -0.157 4.157 8 C -0.122 4.122 9 C 0.317 3.683 10 O -0.379 6.379 11 N -0.351 5.351 12 C 0.345 3.655 13 O -0.404 6.404 14 N -0.166 5.166 15 C -0.450 4.450 16 H 0.114 0.886 17 C -0.160 4.160 18 N -0.444 5.444 19 Si 0.746 3.254 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.200 1.200 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.190 0.810 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.254 0.746 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.571 5.902 -4.197 8.074 hybrid contribution 0.229 -0.337 0.507 0.650 sum -3.342 5.564 -3.690 7.466 Atomic orbital electron populations 1.21821 0.91101 1.02753 1.03088 1.20232 0.96476 0.90759 0.87096 1.19543 0.99239 0.93238 0.96458 1.22042 0.92930 0.96303 0.98348 1.21189 1.00849 0.94267 0.98834 1.21113 0.98518 0.99161 0.95270 1.20922 0.99677 0.95948 0.99175 1.20997 0.99863 0.93393 0.97904 1.20773 0.77278 0.80848 0.89382 1.90684 1.59610 1.70628 1.16987 1.44548 1.50724 1.29601 1.10261 1.15918 0.85100 0.84658 0.79830 1.90847 1.48702 1.41685 1.59206 1.43036 1.49097 1.20950 1.03548 1.18799 1.03183 1.45286 0.77694 0.88588 1.25249 0.94029 0.96833 0.99910 1.69955 1.00338 1.38530 1.35565 0.86135 0.78179 0.78788 0.82295 1.19839 1.20981 1.19957 0.91450 0.91885 0.90404 0.81041 0.86514 0.86925 0.86690 0.86083 0.74553 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.54 37.16 0.32 -1.88 16 2 C 0.14 2.92 0.91 -133.25 -0.12 2.80 16 3 C -0.08 -1.64 4.80 -104.62 -0.50 -2.15 16 4 C -0.08 -1.63 8.93 -39.58 -0.35 -1.98 16 5 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 6 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 7 C -0.14 -2.13 10.05 -39.58 -0.40 -2.53 16 8 C -0.10 -1.77 8.81 -39.58 -0.35 -2.12 16 9 C 0.53 10.84 7.35 -10.55 -0.08 10.76 16 10 O -0.51 -10.46 17.63 5.59 0.10 -10.37 16 11 N -0.68 -14.21 5.70 -15.79 -0.09 -14.30 16 12 C 0.64 15.97 8.07 -88.03 -0.71 15.26 16 13 O -0.53 -15.10 15.17 5.33 0.08 -15.02 16 14 N -0.44 -10.40 2.01 -107.97 -0.22 -10.62 16 15 C -0.32 -7.96 7.34 -14.92 -0.11 -8.07 16 16 H 0.10 2.23 7.69 -52.49 -0.40 1.83 16 17 C 0.05 1.31 4.40 -17.46 -0.08 1.24 16 18 N -0.81 -22.08 10.85 55.49 0.60 -21.47 16 19 Si 0.92 19.94 29.60 -169.99 -5.03 14.91 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H 0.07 1.00 7.31 -51.93 -0.38 0.62 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 26 H 0.17 4.10 4.71 -52.49 -0.25 3.85 16 27 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.94 7.34 -52.49 -0.39 1.55 16 31 H 0.41 7.45 8.96 -40.82 -0.37 7.08 16 32 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 276.13 15.07 4.16 4.16 Total: -1.00 -29.91 276.13 -6.59 -36.50 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -3.02 Total: 9.93 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -3.18 Total: 6.29 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.29 Total: -46.40 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.18 Total: -25.39 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.91 -6.59 -36.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070509629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.672 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds