Wall clock time and date at job start Mon Mar 30 2020 04:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 110.53467 * 2 1 4 4 C 1.38239 * 119.99760 * 122.55610 * 3 2 1 5 5 C 1.38241 * 119.99782 * 179.79180 * 4 3 2 6 6 C 1.38232 * 119.99777 * 0.45399 * 5 4 3 7 7 C 1.38241 * 120.00376 * 359.77912 * 6 5 4 8 8 C 1.38233 * 120.00015 * 302.82765 * 3 2 1 9 9 C 1.51581 * 110.73278 * 237.07923 * 2 1 3 10 10 O 1.21237 * 127.15855 * 61.35897 * 9 2 1 11 11 N 1.34772 * 105.68356 * 241.41135 * 9 2 1 12 12 C 1.33791 * 111.64333 * 0.02562 * 11 9 2 13 13 O 1.21545 * 123.76790 * 180.02562 * 12 11 9 14 14 N 1.34522 * 112.45891 * 0.02562 * 12 11 9 15 15 C 1.37152 * 126.68946 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99982 * 210.43604 * 15 14 12 17 17 C 1.38909 * 120.00011 * 30.42814 * 15 14 12 18 18 N 1.31456 * 119.99922 * 21.13096 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 201.13004 * 17 15 14 20 20 H 1.48506 * 109.47107 * 59.99737 * 19 17 15 21 21 H 1.48490 * 109.47305 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47070 * 300.00284 * 19 17 15 23 23 H 1.08996 * 109.46708 * 59.30213 * 1 2 3 24 24 H 1.09003 * 109.46884 * 179.29734 * 1 2 3 25 25 H 1.09002 * 109.47175 * 299.30019 * 1 2 3 26 26 H 1.08002 * 120.00282 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.99849 * 180.25628 * 5 4 3 28 28 H 1.08004 * 120.00290 * 179.78961 * 6 5 4 29 29 H 1.07993 * 120.00369 * 179.97438 * 7 6 5 30 30 H 1.07995 * 120.00239 * 359.97438 * 8 3 2 31 31 H 0.97000 * 124.17222 * 179.97438 * 11 9 2 32 32 H 0.96996 * 119.99653 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.9044 1.8325 1.0091 5 6 3.3928 3.1257 1.0068 6 6 3.0279 4.0005 0.0005 7 6 2.1783 3.5807 -1.0060 8 6 1.6934 2.2861 -1.0060 9 6 2.0667 -0.7705 -1.1900 10 8 1.8928 -0.5200 -2.3634 11 7 2.7763 -1.7926 -0.6723 12 6 2.7623 -1.7754 0.6654 13 8 3.3322 -2.5960 1.3576 14 7 2.0470 -0.7484 1.1587 15 6 1.8410 -0.4544 2.4824 16 1 0.9265 0.0296 2.7920 17 6 2.8084 -0.7792 3.4248 18 7 4.0532 -0.9724 3.0491 19 14 2.3404 -0.9416 5.2259 20 1 1.3190 -2.0088 5.3777 21 1 3.5446 -1.2930 6.0205 22 1 1.7853 0.3474 5.7112 23 1 -0.3632 0.5246 -0.8837 24 1 -0.3633 -1.0276 -0.0126 25 1 -0.3633 0.5029 0.8962 26 1 3.1860 1.1503 1.7977 27 1 4.0568 3.4536 1.7928 28 1 3.4067 5.0119 0.0005 29 1 1.8929 4.2641 -1.7919 30 1 1.0295 1.9582 -1.7921 31 1 3.2394 -2.4588 -1.2040 32 1 4.7286 -1.1996 3.7072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070509629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:38 Heat of formation + Delta-G solvation = -19.115245 kcal Electronic energy + Delta-G solvation = -20074.896973 eV Core-core repulsion = 17001.184397 eV Total energy + Delta-G solvation = -3073.712576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.19316 -39.84424 -39.31841 -36.94220 -35.86640 -34.22126 -32.28193 -31.50722 -30.14124 -27.44725 -25.57884 -23.63796 -23.42270 -22.67066 -21.18290 -19.21827 -18.74338 -18.02727 -16.95686 -16.81698 -16.66645 -16.34190 -15.74287 -15.52989 -15.32043 -14.91302 -14.66918 -14.14192 -14.03292 -13.52908 -13.49603 -13.26327 -12.94939 -12.76638 -12.64321 -12.20249 -11.98205 -11.81466 -11.47442 -11.06157 -10.92939 -10.71290 -9.70141 -9.66169 -9.48714 -8.25933 -5.96057 0.42117 0.64216 0.85949 1.44752 1.52399 1.56648 1.87005 2.29702 2.57941 2.79434 3.01952 3.17306 3.39805 3.63631 4.04657 4.25467 4.27654 4.45911 4.62264 4.69614 4.75893 4.85469 4.94300 5.11425 5.19066 5.30231 5.36278 5.48403 5.63912 5.80272 5.89188 6.11613 6.24921 6.53373 6.75883 7.09410 7.36122 8.10980 8.80126 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.010456 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.597113 B = 2677.372513 C = 3534.322980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.140 3.860 3 C -0.101 4.101 4 C -0.113 4.113 5 C -0.141 4.141 6 C -0.113 4.113 7 C -0.128 4.128 8 C -0.107 4.107 9 C 0.536 3.464 10 O -0.504 6.504 11 N -0.675 5.675 12 C 0.632 3.368 13 O -0.578 6.578 14 N -0.444 5.444 15 C -0.325 4.325 16 H 0.107 0.893 17 C 0.006 3.994 18 N -0.849 5.849 19 Si 0.980 3.020 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.254 1.254 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.134 0.866 27 H 0.125 0.875 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.135 0.865 31 H 0.426 0.574 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 8.511 -5.322 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.102 4.102 4 C -0.131 4.131 5 C -0.159 4.159 6 C -0.131 4.131 7 C -0.146 4.146 8 C -0.125 4.125 9 C 0.322 3.678 10 O -0.378 6.378 11 N -0.345 5.345 12 C 0.334 3.666 13 O -0.455 6.455 14 N -0.169 5.169 15 C -0.451 4.451 16 H 0.125 0.875 17 C -0.202 4.202 18 N -0.482 5.482 19 Si 0.804 3.196 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.179 1.179 23 H 0.112 0.888 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.152 0.848 27 H 0.143 0.857 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.267 0.733 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.004 8.283 -5.293 11.030 hybrid contribution 0.652 -0.963 0.734 1.375 sum -4.352 7.320 -4.559 9.659 Atomic orbital electron populations 1.21843 0.88571 1.03305 1.04521 1.20498 0.98278 0.90961 0.85218 1.19533 1.00109 0.93111 0.97487 1.21829 0.95222 0.97385 0.98676 1.21355 1.00949 0.93562 1.00082 1.21508 0.97430 1.00282 0.93844 1.21396 0.98076 0.95563 0.99580 1.21189 1.00086 0.93916 0.97300 1.20818 0.76953 0.80505 0.89519 1.90681 1.59690 1.70572 1.16864 1.44308 1.50908 1.30214 1.09053 1.16145 0.85123 0.84634 0.80701 1.90796 1.50714 1.43455 1.60578 1.43159 1.48356 1.20994 1.04377 1.19105 1.03240 1.44369 0.78394 0.87516 1.26076 0.93847 0.96595 1.03662 1.70093 1.01323 1.40444 1.36386 0.85212 0.77358 0.79290 0.77780 1.20118 1.21698 1.17854 0.88805 0.91820 0.90104 0.84798 0.85718 0.83149 0.82756 0.84711 0.73283 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.54 71.98 0.61 -3.40 16 2 C 0.14 5.55 0.91 2.24 0.00 5.55 16 3 C -0.10 -3.87 4.80 -19.87 -0.10 -3.97 16 4 C -0.11 -4.69 8.93 22.27 0.20 -4.49 16 5 C -0.14 -4.80 10.05 22.27 0.22 -4.57 16 6 C -0.11 -3.03 10.05 22.27 0.22 -2.81 16 7 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 8 C -0.11 -3.33 8.81 22.27 0.20 -3.14 16 9 C 0.54 21.41 7.35 87.94 0.65 22.06 16 10 O -0.50 -19.96 17.63 -2.90 -0.05 -20.01 16 11 N -0.68 -28.44 5.70 -441.11 -2.52 -30.96 16 12 C 0.63 32.28 8.07 179.44 1.45 33.73 16 13 O -0.58 -34.25 15.17 -3.86 -0.06 -34.31 16 14 N -0.44 -21.32 2.01 -613.92 -1.24 -22.55 16 15 C -0.32 -16.23 7.34 84.02 0.62 -15.61 16 16 H 0.11 4.96 7.69 -2.91 -0.02 4.94 16 17 C 0.01 0.31 4.40 84.91 0.37 0.69 16 18 N -0.85 -48.15 10.85 21.66 0.24 -47.92 16 19 Si 0.98 41.61 29.60 68.60 2.03 43.64 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 23 H 0.09 2.51 7.31 -2.39 -0.02 2.49 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.08 2.54 7.90 -2.39 -0.02 2.52 16 26 H 0.13 6.64 4.71 -2.91 -0.01 6.62 16 27 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 28 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.14 3.80 7.34 -2.91 -0.02 3.77 16 31 H 0.43 15.50 8.96 -92.71 -0.83 14.67 16 32 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -66.25 276.13 3.41 -62.84 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.34 Total: 28.36 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 4.67 Total: 20.91 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -3.52 Total: -101.43 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.11 Total: -54.32 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -66.25 3.41 -62.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070509629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.725 kcal (2) G-P(sol) polarization free energy of solvation -66.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds