Wall clock time and date at job start Mon Mar 30 2020 04:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 H 1.09006 * 109.46406 * 54.65884 * 3 2 1 5 5 C 1.50701 * 109.47099 * 174.65414 * 3 2 1 6 6 H 1.07995 * 120.00119 * 29.29804 * 5 3 2 7 7 C 1.37884 * 119.99730 * 209.30554 * 5 3 2 8 8 N 1.31513 * 119.99861 * 353.12403 * 7 5 3 9 9 Si 1.86796 * 119.99610 * 173.12823 * 7 5 3 10 10 H 1.48498 * 109.47483 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47048 * 239.99379 * 9 7 5 12 12 H 1.48501 * 109.47275 * 119.99741 * 9 7 5 13 13 N 1.46496 * 109.47776 * 294.65902 * 3 2 1 14 14 C 1.34620 * 124.45974 * 119.71729 * 13 3 2 15 15 O 1.21404 * 125.76353 * 0.02562 * 14 13 3 16 16 C 1.47806 * 108.47763 * 179.88701 * 14 13 3 17 17 C 1.38509 * 135.50585 * 180.10087 * 16 14 13 18 18 C 1.38935 * 118.63622 * 180.29669 * 17 16 14 19 19 N 1.31770 * 121.20401 * 0.02562 * 18 17 16 20 20 C 1.32101 * 122.35221 * 359.97438 * 19 18 17 21 21 C 1.38577 * 120.24858 * 0.02562 * 20 19 18 22 22 C 1.34582 * 124.45557 * 300.02313 * 13 3 2 23 23 O 1.21458 * 125.66389 * 0.02562 * 22 13 3 24 24 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47262 * 299.99509 * 1 2 3 26 26 H 1.08997 * 109.47227 * 59.99448 * 1 2 3 27 27 H 1.09005 * 109.46829 * 240.00634 * 2 1 3 28 28 H 1.08997 * 109.47227 * 120.00552 * 2 1 3 29 29 H 0.96993 * 120.00125 * 354.63970 * 8 7 5 30 30 H 1.08004 * 120.67852 * 0.27431 * 17 16 14 31 31 H 1.07999 * 119.39508 * 180.02562 * 18 17 16 32 32 H 1.07994 * 119.87817 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9831 0.8384 5 6 3.5412 1.4445 0.1324 6 1 4.1182 0.6158 -0.2505 7 6 4.1780 2.5044 0.7425 8 7 3.4931 3.5729 1.0872 9 14 6.0135 2.4226 1.0794 10 1 6.5475 1.1226 0.5996 11 1 6.2550 2.5479 2.5393 12 1 6.6974 3.5320 0.3676 13 7 1.6596 2.0951 -1.2552 14 6 0.8809 3.1901 -1.3389 15 8 0.3901 3.7850 -0.4013 16 6 0.7271 3.5476 -2.7648 17 6 0.0675 4.5416 -3.4685 18 6 0.1553 4.5461 -4.8551 19 7 0.8485 3.6284 -5.4981 20 6 1.4940 2.6614 -4.8709 21 6 1.4596 2.5819 -3.4878 22 6 2.0378 1.6755 -2.4767 23 8 2.7375 0.7101 -2.7086 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.5574 3.6487 0.8433 30 1 -0.5038 5.2975 -2.9500 31 1 -0.3539 5.3157 -5.4160 32 1 2.0505 1.9300 -5.4380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071336738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:35 Heat of formation + Delta-G solvation = -18.563958 kcal Electronic energy + Delta-G solvation = -19667.705481 eV Core-core repulsion = 16594.016811 eV Total energy + Delta-G solvation = -3073.688670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.87008 -39.22870 -37.89827 -35.53959 -34.58662 -32.37044 -31.81473 -30.96021 -27.25460 -25.04916 -24.53850 -23.06901 -22.19979 -20.93401 -19.34731 -17.67600 -17.50467 -16.71486 -16.04050 -15.78726 -14.99494 -14.82140 -14.08339 -13.97843 -13.92852 -13.78596 -13.40562 -13.31609 -13.10467 -12.76625 -12.26679 -11.37639 -11.05566 -10.91237 -10.65687 -10.35245 -10.27849 -10.20751 -10.00857 -9.76931 -9.55765 -9.32580 -9.18383 -8.73933 -8.30298 -6.66494 -4.47647 0.22539 0.84902 2.42165 3.08126 3.33947 3.40531 3.52118 3.66612 3.76906 3.91072 4.26346 4.33379 4.60908 4.75323 4.89668 5.12827 5.18561 5.57436 5.67362 5.69579 5.72289 5.83522 5.89639 6.34028 6.39528 6.43072 6.46533 6.55591 6.93461 7.05776 7.48758 7.67894 7.86205 7.89325 8.25774 8.48136 8.55775 9.29129 10.70498 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.008049 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.120654 B = 3477.728790 C = 3738.596824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.231 3.769 4 H 0.073 0.927 5 C -0.592 4.592 6 H 0.067 0.933 7 C 0.028 3.972 8 N -0.884 5.884 9 Si 1.075 2.925 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.546 5.546 14 C 0.557 3.443 15 O -0.468 6.468 16 C -0.091 4.091 17 C -0.111 4.111 18 C 0.120 3.880 19 N -0.475 5.475 20 C 0.162 3.838 21 C -0.192 4.192 22 C 0.577 3.423 23 O -0.458 6.458 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.282 0.718 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 -0.014 -8.720 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.137 3.863 4 H 0.091 0.909 5 C -0.630 4.630 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.517 5.517 9 Si 0.902 3.098 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.287 5.287 14 C 0.344 3.656 15 O -0.341 6.341 16 C -0.102 4.102 17 C -0.131 4.131 18 C -0.039 4.039 19 N -0.184 5.184 20 C 0.007 3.993 21 C -0.198 4.198 22 C 0.363 3.637 23 O -0.330 6.330 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.188 0.812 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.086 0.539 -8.387 9.824 hybrid contribution -1.340 -0.584 0.108 1.466 sum -6.426 -0.046 -8.279 10.481 Atomic orbital electron populations 1.21828 0.97617 1.00389 1.00931 1.21804 0.93572 0.98036 1.02762 1.19599 0.96620 0.89587 0.80457 0.90890 1.22293 0.90446 1.08427 1.41841 0.91427 1.26183 1.07161 0.92035 0.92801 1.70695 1.12048 1.27653 1.41328 0.83464 0.73443 0.75883 0.77029 1.20898 1.20724 1.21194 1.49038 1.43302 1.26139 1.10220 1.18559 0.78322 0.81272 0.87431 1.90731 1.46491 1.53521 1.43314 1.21469 0.96694 0.95699 0.96364 1.21839 0.98657 0.97766 0.94861 1.23158 0.93961 0.95744 0.91083 1.67809 1.07300 1.02758 1.40498 1.22364 0.93283 0.94392 0.89238 1.22172 1.01743 0.99341 0.96502 1.18056 0.79344 0.83593 0.82668 1.90692 1.32868 1.26009 1.83436 0.93409 0.93022 0.94237 0.91546 0.90828 0.90602 0.83193 0.81233 0.81165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.80 37.16 0.36 -2.33 16 2 C -0.12 -2.59 5.35 -26.73 -0.14 -2.73 16 3 C 0.23 5.64 1.76 -69.08 -0.12 5.52 16 4 H 0.07 1.94 6.39 -51.93 -0.33 1.61 16 5 C -0.59 -15.96 7.86 -34.44 -0.27 -16.23 16 6 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 7 C 0.03 0.77 5.45 -17.82 -0.10 0.67 16 8 N -0.88 -25.96 13.55 55.43 0.75 -25.21 16 9 Si 1.08 24.53 29.91 -169.99 -5.08 19.44 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 13 N -0.55 -12.45 1.98 -111.79 -0.22 -12.67 16 14 C 0.56 12.09 7.72 -12.42 -0.10 11.99 16 15 O -0.47 -11.07 16.61 5.45 0.09 -10.97 16 16 C -0.09 -1.60 6.48 -104.79 -0.68 -2.28 16 17 C -0.11 -1.47 10.17 -39.22 -0.40 -1.87 16 18 C 0.12 1.37 11.19 -17.32 -0.19 1.18 16 19 N -0.47 -6.39 10.33 -12.95 -0.13 -6.53 16 20 C 0.16 2.37 11.24 -17.31 -0.19 2.17 16 21 C -0.19 -3.40 6.45 -104.86 -0.68 -4.07 16 22 C 0.58 12.41 7.36 -12.53 -0.09 12.32 16 23 O -0.46 -10.60 16.08 5.40 0.09 -10.52 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.71 7.76 -51.93 -0.40 0.31 16 27 H 0.07 1.44 6.67 -51.93 -0.35 1.09 16 28 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.28 8.34 5.71 -40.82 -0.23 8.11 16 30 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 283.55 15.07 4.27 4.27 Total: -1.00 -31.51 283.55 -5.89 -37.41 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.06 Total: 0.43 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -2.60 Total: 4.34 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.40 Total: -44.41 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.18 Total: -21.49 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.44 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.51 -5.89 -37.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071336738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.845 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds