Wall clock time and date at job start Mon Mar 30 2020 04:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 H 1.09006 * 109.46406 * 54.65884 * 3 2 1 5 5 C 1.50701 * 109.47099 * 174.65414 * 3 2 1 6 6 H 1.07995 * 120.00119 * 29.29804 * 5 3 2 7 7 C 1.37884 * 119.99730 * 209.30554 * 5 3 2 8 8 N 1.31513 * 119.99861 * 353.12403 * 7 5 3 9 9 Si 1.86796 * 119.99610 * 173.12823 * 7 5 3 10 10 H 1.48498 * 109.47483 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47048 * 239.99379 * 9 7 5 12 12 H 1.48501 * 109.47275 * 119.99741 * 9 7 5 13 13 N 1.46496 * 109.47776 * 294.65902 * 3 2 1 14 14 C 1.34620 * 124.45974 * 119.71729 * 13 3 2 15 15 O 1.21404 * 125.76353 * 0.02562 * 14 13 3 16 16 C 1.47806 * 108.47763 * 179.88701 * 14 13 3 17 17 C 1.38509 * 135.50585 * 180.10087 * 16 14 13 18 18 C 1.38935 * 118.63622 * 180.29669 * 17 16 14 19 19 N 1.31770 * 121.20401 * 0.02562 * 18 17 16 20 20 C 1.32101 * 122.35221 * 359.97438 * 19 18 17 21 21 C 1.38577 * 120.24858 * 0.02562 * 20 19 18 22 22 C 1.34582 * 124.45557 * 300.02313 * 13 3 2 23 23 O 1.21458 * 125.66389 * 0.02562 * 22 13 3 24 24 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47262 * 299.99509 * 1 2 3 26 26 H 1.08997 * 109.47227 * 59.99448 * 1 2 3 27 27 H 1.09005 * 109.46829 * 240.00634 * 2 1 3 28 28 H 1.08997 * 109.47227 * 120.00552 * 2 1 3 29 29 H 0.96993 * 120.00125 * 354.63970 * 8 7 5 30 30 H 1.08004 * 120.67852 * 0.27431 * 17 16 14 31 31 H 1.07999 * 119.39508 * 180.02562 * 18 17 16 32 32 H 1.07994 * 119.87817 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9831 0.8384 5 6 3.5412 1.4445 0.1324 6 1 4.1182 0.6158 -0.2505 7 6 4.1780 2.5044 0.7425 8 7 3.4931 3.5729 1.0872 9 14 6.0135 2.4226 1.0794 10 1 6.5475 1.1226 0.5996 11 1 6.2550 2.5479 2.5393 12 1 6.6974 3.5320 0.3676 13 7 1.6596 2.0951 -1.2552 14 6 0.8809 3.1901 -1.3389 15 8 0.3901 3.7850 -0.4013 16 6 0.7271 3.5476 -2.7648 17 6 0.0675 4.5416 -3.4685 18 6 0.1553 4.5461 -4.8551 19 7 0.8485 3.6284 -5.4981 20 6 1.4940 2.6614 -4.8709 21 6 1.4596 2.5819 -3.4878 22 6 2.0378 1.6755 -2.4767 23 8 2.7375 0.7101 -2.7086 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.5574 3.6487 0.8433 30 1 -0.5038 5.2975 -2.9500 31 1 -0.3539 5.3157 -5.4160 32 1 2.0505 1.9300 -5.4380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071336738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:35 Heat of formation + Delta-G solvation = -39.375574 kcal Electronic energy + Delta-G solvation = -19668.607941 eV Core-core repulsion = 16594.016811 eV Total energy + Delta-G solvation = -3074.591130 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.41004 -40.53969 -39.63062 -37.35840 -36.23919 -34.29291 -33.08654 -32.28235 -29.03770 -26.49556 -26.17446 -24.76724 -23.68080 -22.49749 -20.99070 -19.43984 -19.09286 -18.26758 -17.52008 -17.27124 -16.48672 -16.38354 -15.78126 -15.51051 -15.36395 -15.20868 -15.11522 -15.05963 -14.63100 -14.55277 -13.44830 -13.13572 -12.79229 -12.72059 -12.29357 -12.11162 -11.99014 -11.83692 -11.45391 -11.30048 -11.27385 -10.83137 -10.72283 -10.47348 -10.18300 -8.83751 -6.65256 -1.14902 -0.29088 0.96861 1.38737 1.46525 1.64401 1.73251 2.01362 2.42742 2.52000 2.59701 2.99834 3.18308 3.34328 3.43568 3.74911 4.00854 4.11355 4.13410 4.25012 4.44111 4.55272 4.59266 4.68794 4.77090 4.86565 4.92029 5.23583 5.27287 5.32460 5.58928 5.89525 6.11850 6.23567 6.38073 6.58309 6.75578 7.19442 8.53349 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.008049 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.120654 B = 3477.728790 C = 3738.596824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.233 3.767 4 H 0.043 0.957 5 C -0.604 4.604 6 H 0.054 0.946 7 C -0.018 4.018 8 N -0.916 5.916 9 Si 1.118 2.882 10 H -0.270 1.270 11 H -0.269 1.269 12 H -0.281 1.281 13 N -0.560 5.560 14 C 0.550 3.450 15 O -0.501 6.501 16 C -0.110 4.110 17 C -0.095 4.095 18 C 0.151 3.849 19 N -0.475 5.475 20 C 0.177 3.823 21 C -0.214 4.214 22 C 0.571 3.429 23 O -0.487 6.487 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.269 0.731 30 H 0.179 0.821 31 H 0.227 0.773 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 0.854 -11.207 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.138 3.862 4 H 0.061 0.939 5 C -0.642 4.642 6 H 0.073 0.927 7 C -0.221 4.221 8 N -0.551 5.551 9 Si 0.939 3.061 10 H -0.195 1.195 11 H -0.194 1.194 12 H -0.207 1.207 13 N -0.300 5.300 14 C 0.340 3.660 15 O -0.375 6.375 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.009 4.009 19 N -0.183 5.183 20 C 0.024 3.976 21 C -0.220 4.220 22 C 0.360 3.640 23 O -0.361 6.361 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.196 0.804 31 H 0.244 0.756 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.007 1.391 -10.906 12.528 hybrid contribution -1.203 -0.806 0.743 1.627 sum -7.210 0.585 -10.162 12.474 Atomic orbital electron populations 1.21727 0.95067 1.02356 1.00553 1.21726 0.95831 0.95667 1.02414 1.19358 0.95400 0.91086 0.80374 0.93942 1.22436 0.91839 1.07911 1.42064 0.92736 1.27501 1.10710 0.91499 0.92345 1.70806 1.11610 1.28924 1.43792 0.82936 0.69051 0.76493 0.77663 1.19514 1.19424 1.20738 1.48450 1.44164 1.26977 1.10403 1.19064 0.77343 0.80304 0.89324 1.90695 1.47740 1.54158 1.44924 1.21217 0.99471 0.98126 0.93353 1.22320 0.97022 0.96465 0.95710 1.24094 0.91392 0.95164 0.90293 1.68011 1.07391 1.02795 1.40124 1.22682 0.92495 0.94732 0.87721 1.21799 1.03771 0.99184 0.97198 1.18529 0.78695 0.83666 0.83073 1.90656 1.34269 1.27384 1.83832 0.90184 0.93179 0.94796 0.92392 0.90529 0.92048 0.80362 0.75635 0.79205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 9.80 71.98 0.71 -4.33 16 2 C -0.12 -5.11 5.35 30.59 0.16 -4.95 16 3 C 0.23 11.99 1.76 44.25 0.08 12.07 16 4 H 0.04 2.42 6.39 -2.38 -0.02 2.40 16 5 C -0.60 -34.01 7.86 25.60 0.20 -33.81 16 6 H 0.05 3.14 7.82 -2.91 -0.02 3.12 16 7 C -0.02 -1.01 5.45 84.66 0.46 -0.55 16 8 N -0.92 -56.01 13.55 21.45 0.29 -55.72 16 9 Si 1.12 50.35 29.91 68.60 2.05 52.41 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.56 -26.56 1.98 -744.46 -1.48 -28.03 16 14 C 0.55 24.57 7.72 86.80 0.67 25.24 16 15 O -0.50 -24.64 16.61 -3.42 -0.06 -24.69 16 16 C -0.11 -3.77 6.48 -19.97 -0.13 -3.90 16 17 C -0.09 -2.16 10.17 22.50 0.23 -1.93 16 18 C 0.15 2.59 11.19 84.87 0.95 3.54 16 19 N -0.47 -10.59 10.33 -194.89 -2.01 -12.60 16 20 C 0.18 4.69 11.24 84.73 0.95 5.65 16 21 C -0.21 -7.39 6.45 -20.02 -0.13 -7.52 16 22 C 0.57 25.21 7.36 86.74 0.64 25.85 16 23 O -0.49 -23.26 16.08 -3.58 -0.06 -23.31 16 24 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.03 1.23 7.76 -2.39 -0.02 1.21 16 27 H 0.06 2.59 6.67 -2.38 -0.02 2.57 16 28 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.27 16.77 5.71 -92.71 -0.53 16.24 16 30 H 0.18 3.07 8.06 -2.91 -0.02 3.04 16 31 H 0.23 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -73.34 283.55 4.92 -68.42 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.39 Total: 8.19 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 4.79 Total: 15.34 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.20 Total: -96.35 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -0.11 Total: -48.01 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.41 kcal Total: -73.34 4.92 -68.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071336738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.042 kcal (2) G-P(sol) polarization free energy of solvation -73.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds