Wall clock time and date at job start Mon Mar 30 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47036 * 2 1 4 4 H 1.08998 * 109.47348 * 305.00090 * 3 2 1 5 5 C 1.50699 * 109.46841 * 184.99788 * 3 2 1 6 6 H 1.08003 * 119.99877 * 240.00415 * 5 3 2 7 7 C 1.37872 * 120.00143 * 60.00565 * 5 3 2 8 8 N 1.31520 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00245 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46980 * 59.99935 * 9 7 5 11 11 H 1.48500 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47229 * 299.99898 * 9 7 5 13 13 N 1.46501 * 109.46668 * 65.00334 * 3 2 1 14 14 C 1.34624 * 124.45302 * 239.99664 * 13 3 2 15 15 O 1.21411 * 125.76465 * 359.71682 * 14 13 3 16 16 C 1.47796 * 108.47797 * 179.97438 * 14 13 3 17 17 C 1.38518 * 135.50152 * 179.97438 * 16 14 13 18 18 C 1.38938 * 118.63420 * 180.02562 * 17 16 14 19 19 N 1.31775 * 121.20516 * 0.02562 * 18 17 16 20 20 C 1.32104 * 122.34769 * 0.02562 * 19 18 17 21 21 C 1.38577 * 120.25623 * 359.97438 * 20 19 18 22 22 C 1.34577 * 124.46468 * 59.97163 * 13 3 2 23 23 O 1.21452 * 125.66388 * 0.02562 * 22 13 3 24 24 H 1.09001 * 109.47398 * 300.00244 * 1 2 3 25 25 H 1.09003 * 109.47445 * 59.99680 * 1 2 3 26 26 H 1.08999 * 109.47569 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47198 * 240.00132 * 2 1 3 28 28 H 1.08997 * 109.47224 * 119.99905 * 2 1 3 29 29 H 0.97000 * 120.00279 * 180.02562 * 8 7 5 30 30 H 1.07993 * 120.68181 * 0.05396 * 17 16 14 31 31 H 1.07996 * 119.39717 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.87394 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8813 -1.3817 10 1 6.5974 0.1473 -0.2348 11 1 6.3978 0.2168 -2.6503 12 1 6.4995 2.2815 -1.3820 13 7 1.6524 2.0975 1.2519 14 6 0.8776 3.1957 1.3288 15 8 0.4002 3.7947 0.3868 16 6 0.7113 3.5528 2.7533 17 6 0.0478 4.5484 3.4513 18 6 0.1280 4.5557 4.8384 19 7 0.8183 3.6397 5.4872 20 6 1.4679 2.6720 4.8654 21 6 1.4413 2.5897 3.4823 22 6 2.0236 1.6802 2.4763 23 8 2.7226 0.7159 2.7140 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0616 -2.9495 30 1 -0.5204 5.3032 2.9282 31 1 -0.3849 5.3261 5.3950 32 1 2.0211 1.9417 5.4371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071336739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:38 Heat of formation + Delta-G solvation = -8.881479 kcal Electronic energy + Delta-G solvation = -19433.694777 eV Core-core repulsion = 16360.425970 eV Total energy + Delta-G solvation = -3073.268806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.02078 -39.32894 -38.05135 -35.56911 -34.59021 -32.26985 -31.67637 -30.90175 -27.53670 -25.18981 -24.71213 -22.99517 -22.33065 -20.82196 -19.22462 -17.82322 -17.16260 -16.68951 -16.14528 -15.71246 -15.18071 -15.06151 -14.34504 -14.20144 -13.92638 -13.86769 -13.44439 -12.98377 -12.94120 -12.37351 -11.94412 -11.42331 -11.16952 -10.87094 -10.59824 -10.46943 -10.29919 -10.14302 -10.03721 -9.87018 -9.67246 -9.42648 -9.33553 -8.61008 -8.47289 -6.20416 -4.28530 0.09964 0.74223 2.29167 3.01563 3.26525 3.29868 3.34380 3.49833 3.66303 3.76848 4.17251 4.31704 4.48553 4.65013 4.78521 5.03924 5.11820 5.47801 5.56468 5.71317 6.04715 6.07738 6.23078 6.26932 6.44137 6.69120 6.74864 6.93864 7.19920 7.51212 7.58377 7.69322 7.75160 7.81858 8.07895 8.30406 8.72081 9.37282 10.85198 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.006878 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.346796 B = 4069.915424 C = 4353.244452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.270 3.730 4 H 0.068 0.932 5 C -0.527 4.527 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.887 5.887 9 Si 0.905 3.095 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.547 5.547 14 C 0.565 3.435 15 O -0.466 6.466 16 C -0.090 4.090 17 C -0.108 4.108 18 C 0.122 3.878 19 N -0.473 5.473 20 C 0.165 3.835 21 C -0.190 4.190 22 C 0.573 3.427 23 O -0.443 6.443 24 H 0.027 0.973 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.152 0.848 31 H 0.172 0.828 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 5.581 10.706 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.173 3.827 4 H 0.086 0.914 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.732 3.268 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.287 5.287 14 C 0.352 3.648 15 O -0.338 6.338 16 C -0.102 4.102 17 C -0.129 4.129 18 C -0.038 4.038 19 N -0.182 5.182 20 C 0.010 3.990 21 C -0.195 4.195 22 C 0.359 3.641 23 O -0.313 6.313 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.131 0.869 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.170 0.830 31 H 0.189 0.811 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.374 5.220 10.920 13.679 hybrid contribution 0.896 0.015 -1.065 1.391 sum -5.478 5.235 9.855 12.432 Atomic orbital electron populations 1.21823 0.98841 0.99837 0.99930 1.21997 0.92094 0.98800 1.04553 1.19379 0.96074 0.89973 0.77234 0.91406 1.21112 0.89795 1.39398 1.06238 0.92044 1.24829 0.99017 0.94438 0.95077 1.69833 1.35470 1.37672 1.09480 0.86432 0.84376 0.78449 0.77542 1.19888 1.20946 1.20121 1.47215 1.44526 1.26380 1.10535 1.18225 0.78311 0.80639 0.87629 1.90749 1.46716 1.53313 1.43045 1.21280 0.97115 0.95966 0.95817 1.21835 0.98401 0.97708 0.94919 1.23189 0.93856 0.95743 0.90995 1.67837 1.07150 1.02717 1.40472 1.22395 0.93081 0.94287 0.89226 1.22060 1.01884 0.99098 0.96504 1.17945 0.79751 0.83906 0.82506 1.90763 1.32216 1.25370 1.82920 0.95350 0.93246 0.93957 0.86911 0.92801 0.92277 0.83039 0.81122 0.81002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.80 37.15 0.36 -2.59 16 2 C -0.14 -3.22 5.20 -26.73 -0.14 -3.36 16 3 C 0.27 6.76 2.17 -69.08 -0.15 6.61 16 4 H 0.07 1.85 7.59 -51.93 -0.39 1.45 16 5 C -0.53 -14.37 8.11 -34.44 -0.28 -14.65 16 6 H 0.06 1.71 7.69 -52.48 -0.40 1.30 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 8 N -0.89 -24.34 11.29 55.43 0.63 -23.72 16 9 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.55 -11.94 1.97 -111.80 -0.22 -12.16 16 14 C 0.57 11.22 8.03 -12.42 -0.10 11.12 16 15 O -0.47 -10.14 17.44 5.44 0.09 -10.05 16 16 C -0.09 -1.41 6.48 -104.79 -0.68 -2.09 16 17 C -0.11 -1.23 10.17 -39.22 -0.40 -1.63 16 18 C 0.12 1.20 11.19 -17.32 -0.19 1.00 16 19 N -0.47 -5.70 10.33 -12.95 -0.13 -5.84 16 20 C 0.16 2.17 11.24 -17.31 -0.19 1.98 16 21 C -0.19 -3.05 6.45 -104.86 -0.68 -3.73 16 22 C 0.57 11.68 7.27 -12.54 -0.09 11.59 16 23 O -0.44 -10.04 16.08 5.41 0.09 -9.95 16 24 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 28 H 0.05 1.31 6.68 -51.93 -0.35 0.96 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.17 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -30.40 283.79 -6.03 -36.43 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.10 Total: -1.21 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -2.63 Total: 6.03 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.27 Total: -41.72 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.18 Total: -20.00 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.40 -6.03 -36.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071336739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.544 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds