Wall clock time and date at job start Mon Mar 30 2020 04:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47036 * 2 1 4 4 H 1.08998 * 109.47348 * 305.00090 * 3 2 1 5 5 C 1.50699 * 109.46841 * 184.99788 * 3 2 1 6 6 H 1.08003 * 119.99877 * 240.00415 * 5 3 2 7 7 C 1.37872 * 120.00143 * 60.00565 * 5 3 2 8 8 N 1.31520 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00245 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46980 * 59.99935 * 9 7 5 11 11 H 1.48500 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47229 * 299.99898 * 9 7 5 13 13 N 1.46501 * 109.46668 * 65.00334 * 3 2 1 14 14 C 1.34624 * 124.45302 * 239.99664 * 13 3 2 15 15 O 1.21411 * 125.76465 * 359.71682 * 14 13 3 16 16 C 1.47796 * 108.47797 * 179.97438 * 14 13 3 17 17 C 1.38518 * 135.50152 * 179.97438 * 16 14 13 18 18 C 1.38938 * 118.63420 * 180.02562 * 17 16 14 19 19 N 1.31775 * 121.20516 * 0.02562 * 18 17 16 20 20 C 1.32104 * 122.34769 * 0.02562 * 19 18 17 21 21 C 1.38577 * 120.25623 * 359.97438 * 20 19 18 22 22 C 1.34577 * 124.46468 * 59.97163 * 13 3 2 23 23 O 1.21452 * 125.66388 * 0.02562 * 22 13 3 24 24 H 1.09001 * 109.47398 * 300.00244 * 1 2 3 25 25 H 1.09003 * 109.47445 * 59.99680 * 1 2 3 26 26 H 1.08999 * 109.47569 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47198 * 240.00132 * 2 1 3 28 28 H 1.08997 * 109.47224 * 119.99905 * 2 1 3 29 29 H 0.97000 * 120.00279 * 180.02562 * 8 7 5 30 30 H 1.07993 * 120.68181 * 0.05396 * 17 16 14 31 31 H 1.07996 * 119.39717 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.87394 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8813 -1.3817 10 1 6.5974 0.1473 -0.2348 11 1 6.3978 0.2168 -2.6503 12 1 6.4995 2.2815 -1.3820 13 7 1.6524 2.0975 1.2519 14 6 0.8776 3.1957 1.3288 15 8 0.4002 3.7947 0.3868 16 6 0.7113 3.5528 2.7533 17 6 0.0478 4.5484 3.4513 18 6 0.1280 4.5557 4.8384 19 7 0.8183 3.6397 5.4872 20 6 1.4679 2.6720 4.8654 21 6 1.4413 2.5897 3.4823 22 6 2.0236 1.6802 2.4763 23 8 2.7226 0.7159 2.7140 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0616 -2.9495 30 1 -0.5204 5.3032 2.9282 31 1 -0.3849 5.3261 5.3950 32 1 2.0211 1.9417 5.4371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071336739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:37 Heat of formation + Delta-G solvation = -28.673599 kcal Electronic energy + Delta-G solvation = -19434.553027 eV Core-core repulsion = 16360.425970 eV Total energy + Delta-G solvation = -3074.127057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.44159 -40.51230 -39.66729 -37.32236 -36.23371 -34.00732 -32.97001 -32.25600 -29.36905 -26.51340 -26.27488 -24.65793 -23.68134 -22.39630 -20.82058 -19.24964 -18.80954 -18.27348 -17.43536 -17.28222 -16.89670 -16.43994 -15.97901 -15.47995 -15.17867 -15.13201 -15.03893 -14.80248 -14.57727 -13.86586 -13.46757 -13.30191 -13.06874 -12.76295 -12.32693 -12.24229 -11.92158 -11.79190 -11.68544 -11.28891 -11.27784 -10.78014 -10.59219 -10.45802 -10.33915 -8.28006 -6.43753 -1.14142 -0.25726 0.96952 1.35042 1.38363 1.43531 1.52312 1.95878 2.34373 2.52212 2.60752 3.00739 3.13528 3.35948 3.45138 3.77765 4.15811 4.28497 4.32549 4.43965 4.47018 4.63196 4.69563 4.73884 4.80598 5.01037 5.11796 5.35413 5.38290 5.49400 5.70484 5.84979 6.11960 6.22416 6.52507 6.62588 6.73288 7.25413 8.76813 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.006878 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.346796 B = 4069.915424 C = 4353.244452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.275 3.725 4 H 0.035 0.965 5 C -0.548 4.548 6 H 0.046 0.954 7 C 0.026 3.974 8 N -0.906 5.906 9 Si 0.963 3.037 10 H -0.274 1.274 11 H -0.271 1.271 12 H -0.271 1.271 13 N -0.564 5.564 14 C 0.561 3.439 15 O -0.497 6.497 16 C -0.104 4.104 17 C -0.088 4.088 18 C 0.152 3.848 19 N -0.475 5.475 20 C 0.179 3.821 21 C -0.209 4.209 22 C 0.569 3.431 23 O -0.482 6.482 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.271 0.729 30 H 0.184 0.816 31 H 0.227 0.773 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 7.255 13.072 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.177 3.823 4 H 0.053 0.947 5 C -0.586 4.586 6 H 0.065 0.935 7 C -0.175 4.175 8 N -0.544 5.544 9 Si 0.788 3.212 10 H -0.200 1.200 11 H -0.196 1.196 12 H -0.197 1.197 13 N -0.303 5.303 14 C 0.350 3.650 15 O -0.371 6.371 16 C -0.115 4.115 17 C -0.108 4.108 18 C -0.009 4.009 19 N -0.184 5.184 20 C 0.025 3.975 21 C -0.215 4.215 22 C 0.358 3.642 23 O -0.355 6.355 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.201 0.799 31 H 0.244 0.756 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.352 6.900 13.309 16.697 hybrid contribution 1.107 -0.387 -1.718 2.080 sum -6.245 6.514 11.591 14.689 Atomic orbital electron populations 1.21693 0.96054 1.01479 1.00035 1.21788 0.94545 0.97600 1.02617 1.18955 0.94828 0.90431 0.78128 0.94671 1.21304 0.91134 1.39920 1.06259 0.93522 1.25592 1.03223 0.93983 0.94701 1.69933 1.36998 1.37762 1.09730 0.85529 0.79324 0.78581 0.77791 1.19975 1.19604 1.19654 1.47153 1.45478 1.27365 1.10303 1.18831 0.77068 0.79553 0.89549 1.90713 1.47817 1.53954 1.44625 1.21008 0.99690 0.98184 0.92613 1.22332 0.96555 0.96343 0.95595 1.24125 0.91285 0.95100 0.90359 1.68028 1.07340 1.02813 1.40214 1.22662 0.92392 0.94628 0.87782 1.21638 1.03932 0.98934 0.97037 1.18549 0.78892 0.83842 0.82936 1.90720 1.34100 1.27205 1.83432 0.94667 0.93606 0.91488 0.89313 0.94023 0.91980 0.79872 0.75640 0.79397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 9.80 71.98 0.71 -4.85 16 2 C -0.13 -6.30 5.20 30.60 0.16 -6.14 16 3 C 0.28 14.56 2.17 44.25 0.10 14.65 16 4 H 0.04 2.06 7.59 -2.39 -0.02 2.04 16 5 C -0.55 -31.36 8.11 25.60 0.21 -31.15 16 6 H 0.05 2.73 7.69 -2.91 -0.02 2.71 16 7 C 0.03 1.46 5.29 84.65 0.45 1.90 16 8 N -0.91 -51.42 11.29 21.45 0.24 -51.18 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 13 N -0.56 -25.72 1.97 -744.46 -1.46 -27.19 16 14 C 0.56 22.75 8.03 86.80 0.70 23.45 16 15 O -0.50 -22.25 17.44 -3.44 -0.06 -22.31 16 16 C -0.10 -3.09 6.48 -19.97 -0.13 -3.22 16 17 C -0.09 -1.62 10.17 22.50 0.23 -1.39 16 18 C 0.15 2.08 11.19 84.87 0.95 3.03 16 19 N -0.48 -9.29 10.33 -194.88 -2.01 -11.30 16 20 C 0.18 4.25 11.24 84.73 0.95 5.21 16 21 C -0.21 -6.57 6.45 -20.02 -0.13 -6.70 16 22 C 0.57 24.00 7.27 86.74 0.63 24.63 16 23 O -0.48 -22.89 16.08 -3.56 -0.06 -22.94 16 24 H 0.03 1.36 7.75 -2.39 -0.02 1.35 16 25 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.09 4.82 5.95 -2.39 -0.01 4.81 16 28 H 0.04 2.12 6.68 -2.39 -0.02 2.11 16 29 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 31 H 0.23 0.72 8.06 -2.91 -0.02 0.70 16 32 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -70.72 283.79 4.64 -66.08 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 1.15 Total: 2.99 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 4.82 Total: 19.42 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -3.23 Total: -89.67 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -0.12 Total: -45.25 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.72 4.64 -66.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071336739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.404 kcal (2) G-P(sol) polarization free energy of solvation -70.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds