Wall clock time and date at job start Mon Mar 30 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 C 1.50699 * 119.94063 * 180.32373 * 6 5 4 8 8 C 1.50705 * 109.47429 * 270.28383 * 7 6 5 9 9 N 1.30744 * 126.28512 * 89.71342 * 8 7 6 10 10 C 1.36366 * 105.50800 * 179.86576 * 9 8 7 11 11 C 1.41736 * 126.58414 * 180.13057 * 10 9 8 12 12 H 1.07996 * 120.00378 * 0.29380 * 11 10 9 13 13 C 1.39977 * 119.99569 * 180.30269 * 11 10 9 14 14 N 1.30741 * 119.99984 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99551 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47606 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47089 * 120.00072 * 15 13 11 18 18 H 1.48504 * 109.46981 * 239.99434 * 15 13 11 19 19 N 1.31860 * 106.82316 * 0.39953 * 10 9 8 20 20 O 1.21271 * 109.90241 * 359.74825 * 19 10 9 21 21 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 22 22 C 1.38146 * 120.05909 * 359.67357 * 21 6 5 23 23 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 25 25 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 26 26 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 28 28 H 1.09004 * 109.47195 * 30.28420 * 7 6 5 29 29 H 1.09000 * 109.47036 * 150.28083 * 7 6 5 30 30 H 0.97006 * 119.99791 * 179.97438 * 14 13 11 31 31 H 1.08006 * 119.97147 * 179.69567 * 21 6 5 32 32 H 1.07993 * 120.03340 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 6 3.9862 5.0184 -0.0028 8 6 4.2153 5.4671 1.4176 9 7 5.2696 5.2145 2.1483 10 6 5.0348 5.8183 3.3482 11 6 5.8973 5.8265 4.4729 12 1 6.8509 5.3220 4.4258 13 6 5.5128 6.4885 5.6448 14 7 4.3584 7.0996 5.7017 15 14 6.6492 6.4988 7.1273 16 1 7.8858 5.7409 6.8085 17 1 7.0015 7.8998 7.4713 18 1 5.9633 5.8634 8.2811 19 7 3.8487 6.3881 3.2631 20 8 3.3745 6.1921 2.1642 21 6 1.9212 3.6047 -0.0004 22 6 1.2916 2.3751 0.0001 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 4.0209 0.3797 -0.0005 27 1 5.1346 2.5748 0.0090 28 1 4.9439 4.9377 -0.5172 29 1 3.3579 5.7458 -0.5168 30 1 4.0918 7.5581 6.5139 31 1 1.3343 4.5114 -0.0003 32 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071533906.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:52 Heat of formation + Delta-G solvation = 40.534252 kcal Electronic energy + Delta-G solvation = -18310.851941 eV Core-core repulsion = 15239.725961 eV Total energy + Delta-G solvation = -3071.125980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.16590 -40.06324 -37.67487 -34.35183 -33.53754 -32.25917 -30.97615 -29.69249 -27.78220 -26.51742 -25.90005 -22.61046 -21.75788 -21.54141 -20.35660 -18.13732 -17.25444 -16.25254 -16.13432 -15.78112 -15.64550 -15.13885 -14.65101 -14.22445 -13.88805 -13.68291 -13.39448 -12.99425 -12.48729 -12.16350 -11.98495 -11.59886 -11.30197 -11.27678 -11.01591 -10.80088 -10.70921 -10.32326 -10.18013 -10.02663 -9.21430 -9.01891 -8.87252 -8.11976 -7.94685 -6.59036 -4.59120 1.46455 1.48660 2.93438 3.05902 3.13766 3.20463 3.24603 3.81279 4.01346 4.10746 4.52216 4.80653 4.93492 5.00678 5.03323 5.08270 5.23122 5.31797 5.38480 5.50342 5.58105 5.76404 5.88767 6.01542 6.20679 6.33926 6.43731 6.68388 6.78604 6.82730 7.04115 7.30146 7.40635 7.81879 8.35129 8.57485 8.89769 10.36621 10.50432 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.004447 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.354196 B = 6295.030418 C = 6556.395274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.153 4.153 5 C -0.059 4.059 6 C -0.113 4.113 7 C 0.029 3.971 8 C 0.121 3.879 9 N -0.516 5.516 10 C 0.288 3.712 11 C -0.434 4.434 12 H 0.091 0.909 13 C 0.070 3.930 14 N -0.774 5.774 15 Si 0.922 3.078 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.274 1.274 19 N -0.424 5.424 20 O 0.015 5.985 21 C -0.066 4.066 22 C -0.210 4.210 23 H 0.097 0.903 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.129 0.871 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.276 0.724 31 H 0.128 0.872 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 -9.136 -11.470 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.115 4.115 7 C -0.010 4.010 8 C -0.102 4.102 9 N -0.257 5.257 10 C 0.036 3.964 11 C -0.475 4.475 12 H 0.109 0.891 13 C -0.151 4.151 14 N -0.403 5.403 15 Si 0.747 3.253 16 H -0.184 1.184 17 H -0.199 1.199 18 H -0.200 1.200 19 N -0.153 5.153 20 O -0.026 6.026 21 C -0.084 4.084 22 C -0.228 4.228 23 H 0.115 0.885 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.315 -8.934 -10.731 15.325 hybrid contribution 0.109 0.154 0.777 0.800 sum -6.207 -8.780 -9.954 14.652 Atomic orbital electron populations 1.23022 0.78674 1.03632 1.01394 1.86043 1.21191 1.27232 1.88952 1.19045 0.92419 0.83987 0.96960 1.20389 0.91240 0.98617 1.06925 1.20938 1.00298 0.90747 0.95761 1.19594 0.93507 0.94562 1.03815 1.18682 1.02096 0.93325 0.86892 1.27819 0.88456 0.96491 0.97431 1.72147 1.24218 1.25068 1.04304 1.22442 0.90695 0.91667 0.91547 1.18445 1.03110 1.32565 0.93410 0.89079 1.25833 0.95539 0.93687 1.00022 1.69886 1.18613 1.24026 1.27804 0.86029 0.80523 0.78658 0.80116 1.18383 1.19932 1.19961 1.75572 1.14113 1.29446 0.96119 1.85186 1.42942 1.55048 1.19394 1.20891 0.93930 0.97266 0.96346 1.21158 0.99817 0.92297 1.09559 0.88490 0.92630 0.92750 0.85297 0.84810 0.88000 0.88795 0.91306 0.85375 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.10 10.50 -19.40 -0.20 -4.30 16 3 C 0.12 1.69 6.69 -39.21 -0.26 1.43 16 4 C -0.15 -2.17 9.99 -39.43 -0.39 -2.56 16 5 C -0.06 -0.88 9.70 -39.60 -0.38 -1.26 16 6 C -0.11 -1.73 5.12 -104.60 -0.54 -2.27 16 7 C 0.03 0.46 5.97 -29.03 -0.17 0.28 16 8 C 0.12 2.73 7.71 -12.92 -0.10 2.63 16 9 N -0.52 -13.61 11.62 -10.83 -0.13 -13.73 16 10 C 0.29 8.59 7.70 -156.99 -1.21 7.38 16 11 C -0.43 -12.70 9.52 -37.60 -0.36 -13.06 16 12 H 0.09 2.54 7.85 -52.49 -0.41 2.13 16 13 C 0.07 1.92 5.49 -17.36 -0.10 1.83 16 14 N -0.77 -22.36 11.98 55.55 0.67 -21.69 16 15 Si 0.92 20.04 29.56 -169.99 -5.02 15.02 16 16 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 N -0.42 -12.67 10.49 30.27 0.32 -12.36 16 20 O 0.01 0.38 11.28 17.72 0.20 0.58 16 21 C -0.07 -0.94 9.69 -39.61 -0.38 -1.32 16 22 C -0.21 -2.78 9.04 -39.43 -0.36 -3.13 16 23 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.10 1.41 8.09 -51.93 -0.42 0.99 16 29 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 30 H 0.28 7.20 8.29 -40.82 -0.34 6.86 16 31 H 0.13 1.61 8.06 -52.48 -0.42 1.18 16 32 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -34.77 289.41 -6.27 -41.04 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.20 Total: -0.10 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -3.26 Total: -8.83 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.86 Total: -47.78 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: 0.00 Total: -3.72 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.77 -6.27 -41.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071533906.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.576 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds