Wall clock time and date at job start Mon Mar 30 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 C 1.50699 * 119.94063 * 180.32373 * 6 5 4 8 8 C 1.50705 * 109.47429 * 270.28383 * 7 6 5 9 9 N 1.30744 * 126.28512 * 89.71342 * 8 7 6 10 10 C 1.36366 * 105.50800 * 179.86576 * 9 8 7 11 11 C 1.41736 * 126.58414 * 180.13057 * 10 9 8 12 12 H 1.07996 * 120.00378 * 0.29380 * 11 10 9 13 13 C 1.39977 * 119.99569 * 180.30269 * 11 10 9 14 14 N 1.30741 * 119.99984 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99551 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47606 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47089 * 120.00072 * 15 13 11 18 18 H 1.48504 * 109.46981 * 239.99434 * 15 13 11 19 19 N 1.31860 * 106.82316 * 0.39953 * 10 9 8 20 20 O 1.21271 * 109.90241 * 359.74825 * 19 10 9 21 21 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 22 22 C 1.38146 * 120.05909 * 359.67357 * 21 6 5 23 23 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 25 25 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 26 26 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 28 28 H 1.09004 * 109.47195 * 30.28420 * 7 6 5 29 29 H 1.09000 * 109.47036 * 150.28083 * 7 6 5 30 30 H 0.97006 * 119.99791 * 179.97438 * 14 13 11 31 31 H 1.08006 * 119.97147 * 179.69567 * 21 6 5 32 32 H 1.07993 * 120.03340 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 6 3.9862 5.0184 -0.0028 8 6 4.2153 5.4671 1.4176 9 7 5.2696 5.2145 2.1483 10 6 5.0348 5.8183 3.3482 11 6 5.8973 5.8265 4.4729 12 1 6.8509 5.3220 4.4258 13 6 5.5128 6.4885 5.6448 14 7 4.3584 7.0996 5.7017 15 14 6.6492 6.4988 7.1273 16 1 7.8858 5.7409 6.8085 17 1 7.0015 7.8998 7.4713 18 1 5.9633 5.8634 8.2811 19 7 3.8487 6.3881 3.2631 20 8 3.3745 6.1921 2.1642 21 6 1.9212 3.6047 -0.0004 22 6 1.2916 2.3751 0.0001 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 4.0209 0.3797 -0.0005 27 1 5.1346 2.5748 0.0090 28 1 4.9439 4.9377 -0.5172 29 1 3.3579 5.7458 -0.5168 30 1 4.0918 7.5581 6.5139 31 1 1.3343 4.5114 -0.0003 32 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071533906.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:52 Heat of formation + Delta-G solvation = 16.288492 kcal Electronic energy + Delta-G solvation = -18311.903316 eV Core-core repulsion = 15239.725961 eV Total energy + Delta-G solvation = -3072.177355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.23291 -41.07125 -38.71017 -36.41058 -35.31886 -33.93620 -32.04947 -31.35789 -28.85949 -28.50380 -27.15096 -23.98311 -23.49193 -23.05825 -21.92261 -19.26236 -19.03751 -18.17158 -17.74694 -17.14814 -16.65253 -16.56836 -16.25534 -15.59849 -15.21109 -14.92450 -14.70284 -14.42028 -13.54743 -13.49388 -13.11261 -13.05848 -12.96541 -12.87837 -12.63998 -12.15709 -12.13320 -11.96165 -11.87646 -11.70488 -11.18026 -11.09703 -10.12734 -9.95043 -9.10692 -8.64139 -6.78389 0.33570 0.40386 1.07009 1.34852 1.36808 1.55870 2.06462 2.19876 2.37430 2.57325 2.99494 3.22789 3.61390 3.86228 3.89599 3.98047 4.27198 4.39864 4.43504 4.45942 4.57527 4.63310 4.69374 4.74021 4.79394 5.09839 5.15588 5.23019 5.31174 5.36649 5.65113 5.80392 5.80546 6.18058 6.43820 6.47745 6.76676 8.34861 8.47580 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.004447 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.354196 B = 6295.030418 C = 6556.395274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.116 3.884 4 C -0.167 4.167 5 C -0.069 4.069 6 C -0.133 4.133 7 C 0.033 3.967 8 C 0.146 3.854 9 N -0.543 5.543 10 C 0.258 3.742 11 C -0.472 4.472 12 H 0.092 0.908 13 C 0.023 3.977 14 N -0.814 5.814 15 Si 1.008 2.992 16 H -0.252 1.252 17 H -0.261 1.261 18 H -0.263 1.263 19 N -0.463 5.463 20 O 0.008 5.992 21 C -0.072 4.072 22 C -0.212 4.212 23 H 0.121 0.879 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.286 0.714 31 H 0.144 0.856 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 -9.785 -11.712 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.071 3.929 4 C -0.186 4.186 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.005 4.005 8 C -0.076 4.076 9 N -0.283 5.283 10 C 0.006 3.994 11 C -0.512 4.512 12 H 0.110 0.890 13 C -0.194 4.194 14 N -0.443 5.443 15 Si 0.827 3.173 16 H -0.175 1.175 17 H -0.186 1.186 18 H -0.188 1.188 19 N -0.194 5.194 20 O -0.032 6.032 21 C -0.090 4.090 22 C -0.230 4.230 23 H 0.139 0.861 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.158 0.842 27 H 0.155 0.845 28 H 0.140 0.860 29 H 0.146 0.854 30 H 0.096 0.904 31 H 0.162 0.838 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.695 -9.598 -11.014 16.071 hybrid contribution 0.097 0.244 0.700 0.747 sum -6.599 -9.354 -10.315 15.409 Atomic orbital electron populations 1.23350 0.76486 1.05606 1.02228 1.86032 1.23487 1.26690 1.88648 1.19239 0.92609 0.84801 0.96238 1.20598 0.91922 0.98879 1.07155 1.21080 1.00638 0.91099 0.95888 1.19598 0.94136 0.94076 1.05656 1.19069 1.04230 0.94522 0.82691 1.29082 0.86365 0.93169 0.99001 1.72131 1.25961 1.26255 1.03946 1.22935 0.91200 0.92359 0.92921 1.18880 1.03580 1.34056 0.94720 0.88971 1.26979 0.97225 0.92218 1.02996 1.69985 1.20612 1.24443 1.29282 0.84780 0.78017 0.79332 0.75181 1.17547 1.18578 1.18798 1.75538 1.14712 1.31089 0.98048 1.85088 1.43230 1.55882 1.18988 1.21166 0.93723 0.98371 0.95757 1.21448 1.01194 0.91686 1.08721 0.86130 0.92387 0.91221 0.84246 0.84542 0.85958 0.85360 0.90418 0.83845 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.98 10.50 -92.33 -0.97 -8.95 16 3 C 0.12 3.09 6.69 22.51 0.15 3.24 16 4 C -0.17 -4.60 9.99 22.37 0.22 -4.38 16 5 C -0.07 -1.99 9.70 22.26 0.22 -1.78 16 6 C -0.13 -3.89 5.12 -19.85 -0.10 -3.99 16 7 C 0.03 0.99 5.97 29.10 0.17 1.17 16 8 C 0.15 6.60 7.71 88.34 0.68 7.28 16 9 N -0.54 -29.11 11.62 -304.65 -3.54 -32.64 16 10 C 0.26 15.79 7.70 134.75 1.04 16.83 16 11 C -0.47 -28.28 9.52 23.56 0.22 -28.05 16 12 H 0.09 5.27 7.85 -2.91 -0.02 5.24 16 13 C 0.02 1.26 5.49 85.28 0.47 1.73 16 14 N -0.81 -47.75 11.98 21.83 0.26 -47.49 16 15 Si 1.01 40.99 29.56 68.60 2.03 43.02 16 16 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 17 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 19 N -0.46 -28.43 10.49 -60.23 -0.63 -29.06 16 20 O 0.01 0.40 11.28 73.47 0.83 1.23 16 21 C -0.07 -1.91 9.69 22.25 0.22 -1.70 16 22 C -0.21 -5.20 9.04 22.37 0.20 -4.99 16 23 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.06 0.83 7.66 -2.39 -0.02 0.82 16 25 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 26 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 27 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.12 3.15 8.09 -2.38 -0.02 3.13 16 29 H 0.13 2.93 8.08 -2.39 -0.02 2.91 16 30 H 0.29 15.00 8.29 -92.70 -0.77 14.23 16 31 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.15 2.81 6.30 -2.91 -0.02 2.79 16 Total: -1.00 -77.36 289.41 3.73 -73.63 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.15 Total: 13.53 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.60 Total: -13.27 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.91 Total: -109.19 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.14 Total: -7.72 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -77.36 3.73 -73.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071533906.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.920 kcal (2) G-P(sol) polarization free energy of solvation -77.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds