Wall clock time and date at job start Mon Mar 30 2020 04:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47356 * 89.99617 * 8 7 6 10 10 N 1.30445 * 126.07163 * 269.69258 * 9 8 7 11 11 O 1.21285 * 110.68226 * 179.79679 * 10 9 8 12 12 C 1.34755 * 109.53186 * 0.46954 * 11 10 9 13 13 C 1.40332 * 126.79065 * 179.69464 * 12 11 10 14 14 H 1.08004 * 120.00176 * 180.02562 * 13 12 11 15 15 C 1.40464 * 120.00416 * 0.02562 * 13 12 11 16 16 N 1.30509 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00234 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47176 * 59.99646 * 17 15 13 19 19 H 1.48500 * 109.47433 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47110 * 299.99804 * 17 15 13 21 21 N 1.33327 * 106.41044 * 359.70718 * 12 11 10 22 22 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 23 23 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 24 24 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 25 25 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 28 28 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 29 29 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 30 30 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 31 31 H 0.97001 * 119.99856 * 180.02562 * 16 15 13 32 32 H 1.07997 * 120.02798 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0624 2.6240 1.4214 10 7 6.2667 3.6903 2.1445 11 8 6.6678 3.3887 3.2487 12 6 6.7726 2.0483 3.3393 13 6 7.2070 1.3126 4.4526 14 1 7.2489 0.2345 4.4046 15 6 7.5873 1.9784 5.6295 16 7 7.5363 3.2812 5.6878 17 14 8.1662 0.9991 7.1112 18 1 9.3673 0.2074 6.7427 19 1 8.5063 1.9296 8.2174 20 1 7.0846 0.0818 7.5515 21 7 6.3822 1.5594 2.1619 22 6 3.4311 1.2848 0.0003 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3203 0.0108 27 1 1.3339 4.5114 0.0034 28 1 3.7922 4.6381 0.0022 29 1 5.9714 1.7294 -0.5140 30 1 5.8757 3.5068 -0.5126 31 1 7.7993 3.7410 6.5004 32 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073641262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:06 Heat of formation + Delta-G solvation = 29.852764 kcal Electronic energy + Delta-G solvation = -18401.083593 eV Core-core repulsion = 15329.494429 eV Total energy + Delta-G solvation = -3071.589164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.97706 -39.93544 -37.51414 -34.16620 -34.07035 -32.01703 -30.50941 -29.90787 -27.40892 -26.76011 -26.24888 -22.37220 -21.75109 -21.31667 -20.28488 -17.88968 -17.29787 -16.08330 -15.76547 -15.74090 -15.65157 -15.41267 -14.84320 -14.07856 -13.71731 -13.42388 -13.19725 -13.03916 -12.26432 -11.99714 -11.86449 -11.57505 -11.44041 -11.42015 -11.27918 -10.90670 -10.68283 -10.50637 -10.03738 -9.88519 -9.46337 -8.86460 -8.59148 -8.22146 -7.97962 -7.05470 -4.98667 1.53268 1.69569 2.83350 2.97605 3.01571 3.28973 3.38537 3.75823 3.88184 4.05789 4.90287 4.99135 5.08654 5.09465 5.13124 5.26505 5.32968 5.41280 5.47531 5.53508 5.61576 5.74905 5.91331 6.15690 6.25318 6.49209 6.59771 6.64712 6.87535 6.91108 6.99883 7.44345 7.56553 7.93210 8.14486 8.35787 8.50332 9.93866 10.42431 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.004875 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.677914 B = 5741.885725 C = 6309.966668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.121 3.879 4 C -0.215 4.215 5 C -0.085 4.085 6 C -0.143 4.143 7 C -0.028 4.028 8 C 0.020 3.980 9 C 0.164 3.836 10 N -0.468 5.468 11 O 0.045 5.955 12 C 0.303 3.697 13 C -0.417 4.417 14 H 0.112 0.888 15 C 0.071 3.929 16 N -0.765 5.765 17 Si 0.936 3.064 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.260 1.260 21 N -0.610 5.610 22 C -0.132 4.132 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.292 0.708 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 -2.018 -6.871 12.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.076 3.924 4 C -0.234 4.234 5 C -0.104 4.104 6 C -0.161 4.161 7 C -0.029 4.029 8 C -0.019 4.019 9 C -0.110 4.110 10 N -0.198 5.198 11 O -0.002 6.002 12 C 0.112 3.888 13 C -0.455 4.455 14 H 0.130 0.870 15 C -0.154 4.154 16 N -0.392 5.392 17 Si 0.759 3.241 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.184 1.184 21 N -0.354 5.354 22 C -0.150 4.150 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.753 -1.562 -7.286 12.273 hybrid contribution -0.013 -0.199 0.993 1.012 sum -9.765 -1.761 -6.293 11.750 Atomic orbital electron populations 1.22996 0.78940 1.03561 1.01101 1.86074 1.20926 1.27158 1.89002 1.18959 0.92252 0.83952 0.97252 1.21130 0.99545 0.92527 1.10171 1.20840 0.94490 0.96769 0.98257 1.21004 0.93624 0.98287 1.03171 1.19537 0.95135 0.92269 0.96006 1.18599 0.89983 1.03634 0.89639 1.24584 1.01629 0.86721 0.98052 1.74295 1.25589 1.24710 0.95171 1.85528 1.64935 1.25161 1.24544 1.24200 0.91115 0.80345 0.93151 1.18523 1.39429 0.94936 0.92576 0.87038 1.26188 0.93093 0.95269 1.00825 1.69631 1.31372 1.08807 1.29427 0.85897 0.80171 0.79701 0.78365 1.18353 1.19874 1.18397 1.72218 1.31749 1.27887 1.03553 1.20347 0.91121 0.98566 1.04991 0.92833 0.92941 0.88515 0.85936 0.86031 0.85767 0.89075 0.89527 0.89677 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.78 10.50 -19.41 -0.20 -4.98 16 3 C 0.12 1.97 6.69 -39.22 -0.26 1.71 16 4 C -0.21 -3.10 9.04 -39.43 -0.36 -3.46 16 5 C -0.09 -1.25 10.04 -39.61 -0.40 -1.65 16 6 C -0.14 -2.39 9.70 -39.56 -0.38 -2.77 16 7 C -0.03 -0.52 5.11 -104.65 -0.54 -1.05 16 8 C 0.02 0.39 5.97 -29.03 -0.17 0.22 16 9 C 0.16 4.16 7.41 -156.79 -1.16 3.00 16 10 N -0.47 -12.90 12.15 31.51 0.38 -12.52 16 11 O 0.05 1.34 9.74 15.13 0.15 1.49 16 12 C 0.30 8.77 7.82 -16.36 -0.13 8.64 16 13 C -0.42 -11.20 9.48 -37.96 -0.36 -11.56 16 14 H 0.11 2.82 7.85 -52.48 -0.41 2.41 16 15 C 0.07 1.74 5.50 -17.28 -0.10 1.65 16 16 N -0.77 -19.74 12.06 55.57 0.67 -19.07 16 17 Si 0.94 17.83 29.56 -169.99 -5.03 12.80 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 N -0.61 -16.94 11.61 -11.51 -0.13 -17.08 16 22 C -0.13 -2.37 9.64 -39.43 -0.38 -2.75 16 23 H 0.05 0.50 7.65 -51.93 -0.40 0.11 16 24 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 25 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.12 1.40 6.30 -52.49 -0.33 1.07 16 27 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 29 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16 30 H 0.09 1.49 8.08 -51.93 -0.42 1.07 16 31 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 32 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -31.91 289.41 -6.25 -38.16 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.20 Total: 3.57 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -3.24 Total: -6.74 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.92 Total: -48.66 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.06 Total: -3.49 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.91 -6.25 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.014 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds