Wall clock time and date at job start Mon Mar 30 2020 04:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47356 * 89.99617 * 8 7 6 10 10 N 1.30445 * 126.07163 * 269.69258 * 9 8 7 11 11 O 1.21285 * 110.68226 * 179.79679 * 10 9 8 12 12 C 1.34755 * 109.53186 * 0.46954 * 11 10 9 13 13 C 1.40332 * 126.79065 * 179.69464 * 12 11 10 14 14 H 1.08004 * 120.00176 * 180.02562 * 13 12 11 15 15 C 1.40464 * 120.00416 * 0.02562 * 13 12 11 16 16 N 1.30509 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00234 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47176 * 59.99646 * 17 15 13 19 19 H 1.48500 * 109.47433 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47110 * 299.99804 * 17 15 13 21 21 N 1.33327 * 106.41044 * 359.70718 * 12 11 10 22 22 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 23 23 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 24 24 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 25 25 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 28 28 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 29 29 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 30 30 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 31 31 H 0.97001 * 119.99856 * 180.02562 * 16 15 13 32 32 H 1.07997 * 120.02798 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0624 2.6240 1.4214 10 7 6.2667 3.6903 2.1445 11 8 6.6678 3.3887 3.2487 12 6 6.7726 2.0483 3.3393 13 6 7.2070 1.3126 4.4526 14 1 7.2489 0.2345 4.4046 15 6 7.5873 1.9784 5.6295 16 7 7.5363 3.2812 5.6878 17 14 8.1662 0.9991 7.1112 18 1 9.3673 0.2074 6.7427 19 1 8.5063 1.9296 8.2174 20 1 7.0846 0.0818 7.5515 21 7 6.3822 1.5594 2.1619 22 6 3.4311 1.2848 0.0003 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3203 0.0108 27 1 1.3339 4.5114 0.0034 28 1 3.7922 4.6381 0.0022 29 1 5.9714 1.7294 -0.5140 30 1 5.8757 3.5068 -0.5126 31 1 7.7993 3.7410 6.5004 32 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073641262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:06 Heat of formation + Delta-G solvation = 7.955350 kcal Electronic energy + Delta-G solvation = -18402.033136 eV Core-core repulsion = 15329.494429 eV Total energy + Delta-G solvation = -3072.538707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.02660 -41.10069 -38.71281 -36.06323 -35.99127 -33.67775 -32.10827 -31.34736 -28.71631 -28.40469 -27.75344 -23.73163 -23.59077 -23.00401 -21.87991 -19.61990 -18.70029 -17.81432 -17.34766 -17.24331 -16.97885 -16.71307 -16.61949 -15.43328 -15.19452 -14.83733 -14.72347 -14.32111 -13.66990 -13.58733 -13.27694 -13.08170 -13.05123 -12.87244 -12.59857 -12.11300 -12.02040 -11.94576 -11.91803 -11.72914 -11.33352 -10.96295 -10.29179 -9.85671 -9.19046 -8.95030 -7.08761 0.26316 0.45304 1.01020 1.40444 1.56817 1.58671 2.02970 2.15541 2.36066 2.71581 3.02591 3.28514 3.65354 3.80462 3.80990 3.93852 4.15629 4.29633 4.36855 4.39503 4.49962 4.56114 4.66917 4.71472 4.83991 4.93828 5.03409 5.27548 5.42358 5.49919 5.63163 5.78947 5.88014 6.08841 6.30605 6.45194 6.45808 8.07164 8.32199 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.004875 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.677914 B = 5741.885725 C = 6309.966668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.207 4.207 5 C -0.080 4.080 6 C -0.158 4.158 7 C -0.047 4.047 8 C 0.022 3.978 9 C 0.176 3.824 10 N -0.492 5.492 11 O 0.011 5.989 12 C 0.270 3.730 13 C -0.436 4.436 14 H 0.120 0.880 15 C 0.029 3.971 16 N -0.796 5.796 17 Si 1.021 2.979 18 H -0.250 1.250 19 H -0.258 1.258 20 H -0.252 1.252 21 N -0.636 5.636 22 C -0.157 4.157 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.306 0.694 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 -2.438 -6.133 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.226 4.226 5 C -0.098 4.098 6 C -0.176 4.176 7 C -0.048 4.048 8 C -0.016 4.016 9 C -0.098 4.098 10 N -0.227 5.227 11 O -0.031 6.031 12 C 0.081 3.919 13 C -0.473 4.473 14 H 0.138 0.862 15 C -0.193 4.193 16 N -0.423 5.423 17 Si 0.838 3.162 18 H -0.173 1.173 19 H -0.182 1.182 20 H -0.176 1.176 21 N -0.381 5.381 22 C -0.176 4.176 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.176 0.824 27 H 0.175 0.825 28 H 0.146 0.854 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.179 -1.972 -6.539 13.100 hybrid contribution 0.330 -0.090 0.734 0.810 sum -10.849 -2.062 -5.805 12.476 Atomic orbital electron populations 1.23372 0.76243 1.05640 1.02380 1.86052 1.23746 1.26751 1.88781 1.19075 0.91883 0.85268 0.96854 1.21531 1.01275 0.91545 1.08234 1.21255 0.93780 0.98354 0.96390 1.21193 0.94882 0.97819 1.03691 1.19459 0.94259 0.93155 0.97970 1.18800 0.91323 1.05132 0.86386 1.25477 0.99142 0.85548 0.99679 1.74228 1.27733 1.25537 0.95221 1.85466 1.66480 1.25459 1.25660 1.24822 0.92054 0.80666 0.94323 1.19091 1.39400 0.95584 0.93272 0.86209 1.27383 0.92136 0.96270 1.03477 1.69689 1.30678 1.10819 1.31124 0.84672 0.79842 0.78078 0.73648 1.17330 1.18176 1.17566 1.72218 1.33152 1.28915 1.03864 1.20369 0.92433 0.98020 1.06783 0.92038 0.90986 0.86289 0.82378 0.82533 0.85410 0.88022 0.87566 0.88265 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.82 10.50 -92.38 -0.97 -10.79 16 3 C 0.11 3.64 6.69 22.51 0.15 3.79 16 4 C -0.21 -5.44 9.04 22.37 0.20 -5.24 16 5 C -0.08 -2.15 10.04 22.25 0.22 -1.92 16 6 C -0.16 -5.17 9.70 22.28 0.22 -4.95 16 7 C -0.05 -1.75 5.11 -19.88 -0.10 -1.85 16 8 C 0.02 0.88 5.97 29.10 0.17 1.05 16 9 C 0.18 9.23 7.41 138.61 1.03 10.26 16 10 N -0.49 -28.13 12.15 -56.63 -0.69 -28.82 16 11 O 0.01 0.67 9.74 64.19 0.63 1.29 16 12 C 0.27 16.24 7.82 85.06 0.66 16.90 16 13 C -0.44 -23.90 9.48 23.32 0.22 -23.68 16 14 H 0.12 6.14 7.85 -2.91 -0.02 6.12 16 15 C 0.03 1.43 5.50 85.43 0.47 1.90 16 16 N -0.80 -41.36 12.06 21.91 0.26 -41.10 16 17 Si 1.02 35.29 29.56 68.60 2.03 37.32 16 18 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 19 H -0.26 -8.20 7.11 99.48 0.71 -7.50 16 20 H -0.25 -8.37 7.11 99.48 0.71 -7.67 16 21 N -0.64 -36.72 11.61 -305.24 -3.54 -40.26 16 22 C -0.16 -5.80 9.64 22.37 0.22 -5.58 16 23 H 0.06 0.97 7.65 -2.39 -0.02 0.95 16 24 H 0.07 0.97 7.68 -2.39 -0.02 0.95 16 25 H 0.12 1.49 8.14 -2.38 -0.02 1.48 16 26 H 0.16 2.94 6.30 -2.91 -0.02 2.92 16 27 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 29 H 0.10 3.71 8.09 -2.38 -0.02 3.69 16 30 H 0.11 3.70 8.08 -2.39 -0.02 3.68 16 31 H 0.31 13.86 8.29 -92.71 -0.77 13.09 16 32 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -71.99 289.41 3.44 -68.55 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 1.15 Total: 21.71 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.58 Total: -7.91 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -3.97 Total: -110.18 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.34 Total: -9.50 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -71.99 3.44 -68.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.510 kcal (2) G-P(sol) polarization free energy of solvation -71.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds