Wall clock time and date at job start Mon Mar 30 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00131 * 2 1 4 4 C 1.38756 * 120.05096 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94212 * 179.71799 * 4 3 2 6 6 C 1.38294 * 120.05499 * 0.28466 * 5 4 3 7 7 C 1.38232 * 120.11124 * 359.97438 * 6 5 4 8 8 C 1.38173 * 120.05823 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.02920 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47032 * 265.00110 * 9 8 7 11 11 N 1.30751 * 126.28339 * 89.71679 * 10 9 8 12 12 C 1.36362 * 105.50698 * 179.86710 * 11 10 9 13 13 C 1.41737 * 126.58694 * 180.12893 * 12 11 10 14 14 H 1.08003 * 119.99622 * 0.29579 * 13 12 11 15 15 C 1.39963 * 120.00073 * 180.29488 * 13 12 11 16 16 N 1.30746 * 120.00143 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00066 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47191 * 59.99721 * 17 15 13 19 19 H 1.48506 * 109.46964 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47017 * 299.99890 * 17 15 13 21 21 N 1.31867 * 106.82557 * 0.39316 * 12 11 10 22 22 O 1.21271 * 109.89506 * 359.75621 * 21 12 11 23 23 H 1.08994 * 109.46928 * 60.00366 * 1 2 3 24 24 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46950 * 300.00206 * 1 2 3 26 26 H 1.08002 * 120.03223 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.97249 * 180.25614 * 5 4 3 28 28 H 1.08003 * 119.94130 * 180.02562 * 6 5 4 29 29 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.47189 * 25.00071 * 9 8 7 31 31 H 1.08989 * 109.47128 * 144.99802 * 9 8 7 32 32 H 0.97000 * 120.00250 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0054 6 6 3.3019 3.6758 0.0058 7 6 4.0559 2.5173 0.0010 8 6 3.4311 1.2849 -0.0039 9 6 4.2537 0.0222 -0.0086 10 6 4.4244 -0.4608 -1.4259 11 7 5.3890 -0.1312 -2.2448 12 6 5.1326 -0.8072 -3.4009 13 6 5.9058 -0.7738 -4.5884 14 1 6.8008 -0.1709 -4.6331 15 6 5.5096 -1.5221 -5.7028 16 7 4.4259 -2.2516 -5.6488 17 14 6.5283 -1.4775 -7.2680 18 1 7.9013 -1.9638 -6.9791 19 1 5.8993 -2.3488 -8.2930 20 1 6.5936 -0.0837 -7.7765 21 7 4.0240 -1.4936 -3.2040 22 8 3.6137 -1.3010 -2.0791 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2127 2.3204 -0.0005 27 1 1.3339 4.5113 0.0091 28 1 3.7921 4.6382 0.0109 29 1 5.1344 2.5754 0.0018 30 1 5.2324 0.2246 0.4267 31 1 3.7468 -0.7439 0.5778 32 1 4.1515 -2.7705 -6.4210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073641301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:55 Heat of formation + Delta-G solvation = 43.098380 kcal Electronic energy + Delta-G solvation = -18814.207441 eV Core-core repulsion = 15743.192651 eV Total energy + Delta-G solvation = -3071.014791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.07872 -40.06029 -37.27871 -34.30746 -33.83268 -32.43922 -30.13365 -29.80392 -27.40696 -26.67818 -26.17323 -22.06179 -21.92805 -21.52414 -20.35129 -17.92467 -17.14763 -16.19135 -16.03830 -15.66214 -15.51675 -15.30251 -14.58831 -14.31956 -13.81099 -13.50352 -13.09493 -12.94197 -12.38601 -12.12765 -11.92619 -11.36127 -11.23619 -11.19447 -11.00462 -10.79989 -10.75392 -10.32756 -10.09160 -9.98535 -9.14994 -8.97036 -8.72662 -8.05812 -7.91763 -6.54063 -4.53901 1.41235 1.57948 3.01714 3.12373 3.15083 3.18818 3.42533 3.85190 4.04333 4.16016 4.60919 4.84899 4.90942 5.13152 5.14627 5.23673 5.33721 5.41727 5.48078 5.55885 5.58208 5.74929 5.99013 6.10427 6.12601 6.43121 6.55766 6.67844 6.75339 6.90796 7.11473 7.34802 7.53099 7.89072 8.38729 8.63534 8.94509 10.42364 10.57830 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.005378 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.212872 B = 5204.973037 C = 5575.291848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.304 6.304 3 C 0.140 3.860 4 C -0.213 4.213 5 C -0.084 4.084 6 C -0.161 4.161 7 C -0.063 4.063 8 C -0.110 4.110 9 C 0.033 3.967 10 C 0.126 3.874 11 N -0.520 5.520 12 C 0.287 3.713 13 C -0.435 4.435 14 H 0.089 0.911 15 C 0.070 3.930 16 N -0.776 5.776 17 Si 0.923 3.077 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 N -0.425 5.425 22 O 0.023 5.977 23 H 0.054 0.946 24 H 0.100 0.900 25 H 0.051 0.949 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 7.786 11.542 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.095 3.905 4 C -0.232 4.232 5 C -0.102 4.102 6 C -0.179 4.179 7 C -0.081 4.081 8 C -0.112 4.112 9 C -0.006 4.006 10 C -0.097 4.097 11 N -0.261 5.261 12 C 0.035 3.965 13 C -0.476 4.476 14 H 0.107 0.893 15 C -0.151 4.151 16 N -0.405 5.405 17 Si 0.747 3.253 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.190 1.190 21 N -0.152 5.152 22 O -0.018 6.018 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.151 0.849 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.549 7.127 10.829 14.524 hybrid contribution 0.061 0.218 -0.800 0.831 sum -6.488 7.346 10.029 14.023 Atomic orbital electron populations 1.23031 0.78716 1.03984 1.00857 1.86166 1.21031 1.26366 1.88093 1.18880 0.91770 0.84469 0.95430 1.21166 0.99821 0.92381 1.09853 1.20890 0.94721 0.96753 0.97832 1.21002 0.93851 0.98303 1.04782 1.20963 1.00291 0.90806 0.96015 1.19047 0.90364 0.95413 1.06343 1.18545 1.00560 0.94165 0.87322 1.27721 0.89722 0.94540 0.97682 1.72147 1.25019 1.26305 1.02654 1.22427 0.91112 0.90245 0.92718 1.18337 1.09274 1.27115 0.92889 0.89258 1.25821 0.95086 0.93849 1.00299 1.69875 1.19801 1.20253 1.30541 0.86147 0.80177 0.79007 0.79967 1.18984 1.20408 1.19040 1.75583 1.17229 1.28115 0.94312 1.85215 1.45851 1.50430 1.20300 0.92775 0.88188 0.93024 0.85636 0.86123 0.85977 0.84939 0.88104 0.88525 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.30 -4.81 9.63 -19.44 -0.19 -5.00 16 3 C 0.14 2.23 6.66 -39.22 -0.26 1.97 16 4 C -0.21 -2.87 9.04 -39.43 -0.36 -3.22 16 5 C -0.08 -1.04 10.04 -39.60 -0.40 -1.43 16 6 C -0.16 -2.08 10.04 -39.56 -0.40 -2.48 16 7 C -0.06 -0.92 9.68 -39.61 -0.38 -1.31 16 8 C -0.11 -1.81 5.13 -104.47 -0.54 -2.35 16 9 C 0.03 0.58 5.70 -29.03 -0.17 0.41 16 10 C 0.13 3.00 7.71 -12.92 -0.10 2.90 16 11 N -0.52 -14.13 11.62 -10.83 -0.13 -14.26 16 12 C 0.29 8.74 7.70 -156.99 -1.21 7.53 16 13 C -0.44 -12.92 9.52 -37.60 -0.36 -13.28 16 14 H 0.09 2.51 7.85 -52.48 -0.41 2.10 16 15 C 0.07 1.95 5.49 -17.37 -0.10 1.86 16 16 N -0.78 -22.73 11.98 55.55 0.67 -22.06 16 17 Si 0.92 20.30 29.56 -169.99 -5.02 15.28 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 N -0.42 -13.03 10.49 30.27 0.32 -12.71 16 22 O 0.02 0.63 11.28 17.74 0.20 0.83 16 23 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 24 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 26 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 27 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 29 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.10 1.51 8.05 -51.93 -0.42 1.10 16 31 H 0.10 1.51 7.68 -51.94 -0.40 1.11 16 32 H 0.28 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 288.21 15.07 4.34 4.34 Total: -1.00 -35.45 288.21 -6.26 -41.71 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.18 Total: -0.05 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -3.27 Total: -8.08 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.86 Total: -49.03 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: 0.01 Total: -4.17 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.45 -6.26 -41.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.812 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds