Wall clock time and date at job start Mon Mar 30 2020 04:28:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35904 * 117.00131 * 2 1
4 4 C 1.38756 * 120.05096 * 359.97438 * 3 2 1
5 5 C 1.38122 * 119.94212 * 179.71799 * 4 3 2
6 6 C 1.38294 * 120.05499 * 0.28466 * 5 4 3
7 7 C 1.38232 * 120.11124 * 359.97438 * 6 5 4
8 8 C 1.38173 * 120.05823 * 359.97438 * 7 6 5
9 9 C 1.50701 * 120.02920 * 180.02562 * 8 7 6
10 10 C 1.50703 * 109.47032 * 265.00110 * 9 8 7
11 11 N 1.30751 * 126.28339 * 89.71679 * 10 9 8
12 12 C 1.36362 * 105.50698 * 179.86710 * 11 10 9
13 13 C 1.41737 * 126.58694 * 180.12893 * 12 11 10
14 14 H 1.08003 * 119.99622 * 0.29579 * 13 12 11
15 15 C 1.39963 * 120.00073 * 180.29488 * 13 12 11
16 16 N 1.30746 * 120.00143 * 0.02562 * 15 13 12
17 17 Si 1.86803 * 120.00066 * 179.97438 * 15 13 12
18 18 H 1.48499 * 109.47191 * 59.99721 * 17 15 13
19 19 H 1.48506 * 109.46964 * 180.02562 * 17 15 13
20 20 H 1.48503 * 109.47017 * 299.99890 * 17 15 13
21 21 N 1.31867 * 106.82557 * 0.39316 * 12 11 10
22 22 O 1.21271 * 109.89506 * 359.75621 * 21 12 11
23 23 H 1.08994 * 109.46928 * 60.00366 * 1 2 3
24 24 H 1.08999 * 109.46959 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.46950 * 300.00206 * 1 2 3
26 26 H 1.08002 * 120.03223 * 0.02562 * 4 3 2
27 27 H 1.07999 * 119.97249 * 180.25614 * 5 4 3
28 28 H 1.08003 * 119.94130 * 180.02562 * 6 5 4
29 29 H 1.08008 * 119.97134 * 180.02562 * 7 6 5
30 30 H 1.09003 * 109.47189 * 25.00071 * 9 8 7
31 31 H 1.08989 * 109.47128 * 144.99802 * 9 8 7
32 32 H 0.97000 * 120.00250 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 1.2914 2.3753 -0.0005
5 6 1.9208 3.6048 0.0054
6 6 3.3019 3.6758 0.0058
7 6 4.0559 2.5173 0.0010
8 6 3.4311 1.2849 -0.0039
9 6 4.2537 0.0222 -0.0086
10 6 4.4244 -0.4608 -1.4259
11 7 5.3890 -0.1312 -2.2448
12 6 5.1326 -0.8072 -3.4009
13 6 5.9058 -0.7738 -4.5884
14 1 6.8008 -0.1709 -4.6331
15 6 5.5096 -1.5221 -5.7028
16 7 4.4259 -2.2516 -5.6488
17 14 6.5283 -1.4775 -7.2680
18 1 7.9013 -1.9638 -6.9791
19 1 5.8993 -2.3488 -8.2930
20 1 6.5936 -0.0837 -7.7765
21 7 4.0240 -1.4936 -3.2040
22 8 3.6137 -1.3010 -2.0791
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3633 0.5139 0.8900
26 1 0.2127 2.3204 -0.0005
27 1 1.3339 4.5113 0.0091
28 1 3.7921 4.6382 0.0109
29 1 5.1344 2.5754 0.0018
30 1 5.2324 0.2246 0.4267
31 1 3.7468 -0.7439 0.5778
32 1 4.1515 -2.7705 -6.4210
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000073641301.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:28:55
Heat of formation + Delta-G solvation = 43.098380 kcal
Electronic energy + Delta-G solvation = -18814.207441 eV
Core-core repulsion = 15743.192651 eV
Total energy + Delta-G solvation = -3071.014791 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 260.095 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-43.07872 -40.06029 -37.27871 -34.30746 -33.83268 -32.43922 -30.13365 -29.80392
-27.40696 -26.67818 -26.17323 -22.06179 -21.92805 -21.52414 -20.35129 -17.92467
-17.14763 -16.19135 -16.03830 -15.66214 -15.51675 -15.30251 -14.58831 -14.31956
-13.81099 -13.50352 -13.09493 -12.94197 -12.38601 -12.12765 -11.92619 -11.36127
-11.23619 -11.19447 -11.00462 -10.79989 -10.75392 -10.32756 -10.09160 -9.98535
-9.14994 -8.97036 -8.72662 -8.05812 -7.91763 -6.54063 -4.53901 1.41235
1.57948 3.01714 3.12373 3.15083 3.18818 3.42533 3.85190 4.04333
4.16016 4.60919 4.84899 4.90942 5.13152 5.14627 5.23673 5.33721
5.41727 5.48078 5.55885 5.58208 5.74929 5.99013 6.10427 6.12601
6.43121 6.55766 6.67844 6.75339 6.90796 7.11473 7.34802 7.53099
7.89072 8.38729 8.63534 8.94509 10.42364 10.57830
Molecular weight = 260.09amu
Principal moments of inertia in cm(-1)
A = 0.027385 B = 0.005378 C = 0.005021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1022.212872 B = 5204.973037 C = 5575.291848
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.304 6.304
3 C 0.140 3.860
4 C -0.213 4.213
5 C -0.084 4.084
6 C -0.161 4.161
7 C -0.063 4.063
8 C -0.110 4.110
9 C 0.033 3.967
10 C 0.126 3.874
11 N -0.520 5.520
12 C 0.287 3.713
13 C -0.435 4.435
14 H 0.089 0.911
15 C 0.070 3.930
16 N -0.776 5.776
17 Si 0.923 3.077
18 H -0.265 1.265
19 H -0.279 1.279
20 H -0.266 1.266
21 N -0.425 5.425
22 O 0.023 5.977
23 H 0.054 0.946
24 H 0.100 0.900
25 H 0.051 0.949
26 H 0.126 0.874
27 H 0.121 0.879
28 H 0.122 0.878
29 H 0.133 0.867
30 H 0.101 0.899
31 H 0.096 0.904
32 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.411 7.786 11.542 15.328
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.217 6.217
3 C 0.095 3.905
4 C -0.232 4.232
5 C -0.102 4.102
6 C -0.179 4.179
7 C -0.081 4.081
8 C -0.112 4.112
9 C -0.006 4.006
10 C -0.097 4.097
11 N -0.261 5.261
12 C 0.035 3.965
13 C -0.476 4.476
14 H 0.107 0.893
15 C -0.151 4.151
16 N -0.405 5.405
17 Si 0.747 3.253
18 H -0.190 1.190
19 H -0.204 1.204
20 H -0.190 1.190
21 N -0.152 5.152
22 O -0.018 6.018
23 H 0.072 0.928
24 H 0.118 0.882
25 H 0.070 0.930
26 H 0.144 0.856
27 H 0.139 0.861
28 H 0.140 0.860
29 H 0.151 0.849
30 H 0.119 0.881
31 H 0.115 0.885
32 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -6.549 7.127 10.829 14.524
hybrid contribution 0.061 0.218 -0.800 0.831
sum -6.488 7.346 10.029 14.023
Atomic orbital electron populations
1.23031 0.78716 1.03984 1.00857 1.86166 1.21031 1.26366 1.88093
1.18880 0.91770 0.84469 0.95430 1.21166 0.99821 0.92381 1.09853
1.20890 0.94721 0.96753 0.97832 1.21002 0.93851 0.98303 1.04782
1.20963 1.00291 0.90806 0.96015 1.19047 0.90364 0.95413 1.06343
1.18545 1.00560 0.94165 0.87322 1.27721 0.89722 0.94540 0.97682
1.72147 1.25019 1.26305 1.02654 1.22427 0.91112 0.90245 0.92718
1.18337 1.09274 1.27115 0.92889 0.89258 1.25821 0.95086 0.93849
1.00299 1.69875 1.19801 1.20253 1.30541 0.86147 0.80177 0.79007
0.79967 1.18984 1.20408 1.19040 1.75583 1.17229 1.28115 0.94312
1.85215 1.45851 1.50430 1.20300 0.92775 0.88188 0.93024 0.85636
0.86123 0.85977 0.84939 0.88104 0.88525 0.91270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 9.81 101.05 0.99 1.32 16
2 O -0.30 -4.81 9.63 -19.44 -0.19 -5.00 16
3 C 0.14 2.23 6.66 -39.22 -0.26 1.97 16
4 C -0.21 -2.87 9.04 -39.43 -0.36 -3.22 16
5 C -0.08 -1.04 10.04 -39.60 -0.40 -1.43 16
6 C -0.16 -2.08 10.04 -39.56 -0.40 -2.48 16
7 C -0.06 -0.92 9.68 -39.61 -0.38 -1.31 16
8 C -0.11 -1.81 5.13 -104.47 -0.54 -2.35 16
9 C 0.03 0.58 5.70 -29.03 -0.17 0.41 16
10 C 0.13 3.00 7.71 -12.92 -0.10 2.90 16
11 N -0.52 -14.13 11.62 -10.83 -0.13 -14.26 16
12 C 0.29 8.74 7.70 -156.99 -1.21 7.53 16
13 C -0.44 -12.92 9.52 -37.60 -0.36 -13.28 16
14 H 0.09 2.51 7.85 -52.48 -0.41 2.10 16
15 C 0.07 1.95 5.49 -17.37 -0.10 1.86 16
16 N -0.78 -22.73 11.98 55.55 0.67 -22.06 16
17 Si 0.92 20.30 29.56 -169.99 -5.02 15.28 16
18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16
19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16
20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
21 N -0.42 -13.03 10.49 30.27 0.32 -12.71 16
22 O 0.02 0.63 11.28 17.74 0.20 0.83 16
23 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16
24 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16
25 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16
26 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16
27 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16
28 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16
29 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16
30 H 0.10 1.51 8.05 -51.93 -0.42 1.10 16
31 H 0.10 1.51 7.68 -51.94 -0.40 1.11 16
32 H 0.28 7.35 8.29 -40.82 -0.34 7.01 16
LS Contribution 288.21 15.07 4.34 4.34
Total: -1.00 -35.45 288.21 -6.26 -41.71
By element:
Atomic # 1 Polarization: 3.13 SS G_CDS: -3.18 Total: -0.05 kcal
Atomic # 6 Polarization: -4.81 SS G_CDS: -3.27 Total: -8.08 kcal
Atomic # 7 Polarization: -49.88 SS G_CDS: 0.86 Total: -49.03 kcal
Atomic # 8 Polarization: -4.19 SS G_CDS: 0.01 Total: -4.17 kcal
Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -35.45 -6.26 -41.71 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000073641301.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.812 kcal
(2) G-P(sol) polarization free energy of solvation -35.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.358 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.098 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds