Wall clock time and date at job start Mon Mar 30 2020 04:28:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35904 * 117.00131 * 2 1
4 4 C 1.38756 * 120.05096 * 359.97438 * 3 2 1
5 5 C 1.38122 * 119.94212 * 179.71799 * 4 3 2
6 6 C 1.38294 * 120.05499 * 0.28466 * 5 4 3
7 7 C 1.38232 * 120.11124 * 359.97438 * 6 5 4
8 8 C 1.38173 * 120.05823 * 359.97438 * 7 6 5
9 9 C 1.50701 * 120.02920 * 180.02562 * 8 7 6
10 10 C 1.50703 * 109.47032 * 265.00110 * 9 8 7
11 11 N 1.30751 * 126.28339 * 89.71679 * 10 9 8
12 12 C 1.36362 * 105.50698 * 179.86710 * 11 10 9
13 13 C 1.41737 * 126.58694 * 180.12893 * 12 11 10
14 14 H 1.08003 * 119.99622 * 0.29579 * 13 12 11
15 15 C 1.39963 * 120.00073 * 180.29488 * 13 12 11
16 16 N 1.30746 * 120.00143 * 0.02562 * 15 13 12
17 17 Si 1.86803 * 120.00066 * 179.97438 * 15 13 12
18 18 H 1.48499 * 109.47191 * 59.99721 * 17 15 13
19 19 H 1.48506 * 109.46964 * 180.02562 * 17 15 13
20 20 H 1.48503 * 109.47017 * 299.99890 * 17 15 13
21 21 N 1.31867 * 106.82557 * 0.39316 * 12 11 10
22 22 O 1.21271 * 109.89506 * 359.75621 * 21 12 11
23 23 H 1.08994 * 109.46928 * 60.00366 * 1 2 3
24 24 H 1.08999 * 109.46959 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.46950 * 300.00206 * 1 2 3
26 26 H 1.08002 * 120.03223 * 0.02562 * 4 3 2
27 27 H 1.07999 * 119.97249 * 180.25614 * 5 4 3
28 28 H 1.08003 * 119.94130 * 180.02562 * 6 5 4
29 29 H 1.08008 * 119.97134 * 180.02562 * 7 6 5
30 30 H 1.09003 * 109.47189 * 25.00071 * 9 8 7
31 31 H 1.08989 * 109.47128 * 144.99802 * 9 8 7
32 32 H 0.97000 * 120.00250 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 1.2914 2.3753 -0.0005
5 6 1.9208 3.6048 0.0054
6 6 3.3019 3.6758 0.0058
7 6 4.0559 2.5173 0.0010
8 6 3.4311 1.2849 -0.0039
9 6 4.2537 0.0222 -0.0086
10 6 4.4244 -0.4608 -1.4259
11 7 5.3890 -0.1312 -2.2448
12 6 5.1326 -0.8072 -3.4009
13 6 5.9058 -0.7738 -4.5884
14 1 6.8008 -0.1709 -4.6331
15 6 5.5096 -1.5221 -5.7028
16 7 4.4259 -2.2516 -5.6488
17 14 6.5283 -1.4775 -7.2680
18 1 7.9013 -1.9638 -6.9791
19 1 5.8993 -2.3488 -8.2930
20 1 6.5936 -0.0837 -7.7765
21 7 4.0240 -1.4936 -3.2040
22 8 3.6137 -1.3010 -2.0791
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3633 0.5139 0.8900
26 1 0.2127 2.3204 -0.0005
27 1 1.3339 4.5113 0.0091
28 1 3.7921 4.6382 0.0109
29 1 5.1344 2.5754 0.0018
30 1 5.2324 0.2246 0.4267
31 1 3.7468 -0.7439 0.5778
32 1 4.1515 -2.7705 -6.4210
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000073641301.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:28:55
Heat of formation + Delta-G solvation = 18.088823 kcal
Electronic energy + Delta-G solvation = -18815.291937 eV
Core-core repulsion = 15743.192651 eV
Total energy + Delta-G solvation = -3072.099286 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 260.095 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-45.21501 -41.13859 -38.34810 -36.40845 -35.53338 -34.25597 -31.75774 -31.00676
-28.75975 -28.41135 -27.70101 -23.86985 -23.31142 -22.97443 -22.06034 -19.29817
-18.85125 -18.11695 -17.71022 -17.18172 -16.69960 -16.56084 -16.34826 -15.46835
-15.33340 -14.90727 -14.62423 -14.24096 -13.62709 -13.46369 -13.08971 -13.05501
-12.95427 -12.85725 -12.38965 -12.16291 -12.08865 -11.98841 -11.96090 -11.80372
-11.14535 -11.10503 -10.13319 -9.82770 -9.09857 -8.63223 -6.78522 0.30247
0.51057 1.07043 1.36234 1.37975 1.52580 2.06928 2.19913 2.42882
2.61943 3.00853 3.23177 3.58412 3.78261 3.93919 4.13984 4.28993
4.40569 4.41514 4.48292 4.55554 4.58172 4.70100 4.73989 4.81503
5.00316 5.18518 5.28035 5.38063 5.49935 5.60366 5.79191 5.90135
6.17247 6.47390 6.49418 6.76304 8.35326 8.47726
Molecular weight = 260.09amu
Principal moments of inertia in cm(-1)
A = 0.027385 B = 0.005378 C = 0.005021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1022.212872 B = 5204.973037 C = 5575.291848
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.333 6.333
3 C 0.121 3.879
4 C -0.218 4.218
5 C -0.078 4.078
6 C -0.164 4.164
7 C -0.074 4.074
8 C -0.142 4.142
9 C 0.037 3.963
10 C 0.150 3.850
11 N -0.543 5.543
12 C 0.257 3.743
13 C -0.471 4.471
14 H 0.093 0.907
15 C 0.021 3.979
16 N -0.815 5.815
17 Si 1.010 2.990
18 H -0.254 1.254
19 H -0.265 1.265
20 H -0.255 1.255
21 N -0.464 5.464
22 O 0.010 5.990
23 H 0.053 0.947
24 H 0.111 0.889
25 H 0.078 0.922
26 H 0.150 0.850
27 H 0.156 0.844
28 H 0.150 0.850
29 H 0.138 0.862
30 H 0.124 0.876
31 H 0.111 0.889
32 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.572 9.366 11.523 16.239
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.247 6.247
3 C 0.076 3.924
4 C -0.237 4.237
5 C -0.096 4.096
6 C -0.182 4.182
7 C -0.092 4.092
8 C -0.144 4.144
9 C -0.001 4.001
10 C -0.072 4.072
11 N -0.283 5.283
12 C 0.005 3.995
13 C -0.511 4.511
14 H 0.112 0.888
15 C -0.196 4.196
16 N -0.444 5.444
17 Si 0.828 3.172
18 H -0.178 1.178
19 H -0.189 1.189
20 H -0.179 1.179
21 N -0.195 5.195
22 O -0.029 6.029
23 H 0.072 0.928
24 H 0.129 0.871
25 H 0.096 0.904
26 H 0.167 0.833
27 H 0.174 0.826
28 H 0.167 0.833
29 H 0.156 0.844
30 H 0.142 0.858
31 H 0.130 0.870
32 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -6.724 8.720 10.858 15.465
hybrid contribution 0.008 -0.200 -0.647 0.678
sum -6.716 8.520 10.211 14.898
Atomic orbital electron populations
1.23297 0.76699 1.05250 1.02097 1.86112 1.23321 1.26960 1.88274
1.19154 0.91941 0.85338 0.96005 1.21517 1.01094 0.91977 1.09083
1.21366 0.94880 0.97680 0.95696 1.21378 0.94348 0.98785 1.03702
1.21186 1.00939 0.91020 0.96069 1.19084 0.90888 0.95220 1.09167
1.18853 1.02522 0.95425 0.83324 1.28919 0.87420 0.91640 0.99236
1.72127 1.26486 1.27237 1.02498 1.22961 0.91601 0.90891 0.94056
1.18813 1.09913 1.28479 0.93942 0.88844 1.27025 0.96203 0.92358
1.03981 1.69990 1.21558 1.20673 1.32198 0.84859 0.78275 0.79673
0.74351 1.17787 1.18935 1.17945 1.75551 1.18130 1.29822 0.95996
1.85123 1.46410 1.51490 1.19873 0.92813 0.87102 0.90351 0.83265
0.82638 0.83254 0.84397 0.85809 0.87027 0.90421
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.44 9.81 113.37 1.11 1.56 16
2 O -0.33 -10.48 9.63 -92.47 -0.89 -11.37 16
3 C 0.12 3.76 6.66 22.51 0.15 3.91 16
4 C -0.22 -5.39 9.04 22.37 0.20 -5.19 16
5 C -0.08 -1.70 10.04 22.26 0.22 -1.47 16
6 C -0.16 -3.83 10.04 22.28 0.22 -3.61 16
7 C -0.07 -2.10 9.68 22.25 0.22 -1.89 16
8 C -0.14 -4.62 5.13 -19.77 -0.10 -4.72 16
9 C 0.04 1.30 5.70 29.10 0.17 1.47 16
10 C 0.15 7.33 7.71 88.33 0.68 8.01 16
11 N -0.54 -30.33 11.62 -304.65 -3.54 -33.87 16
12 C 0.26 16.19 7.70 134.75 1.04 17.23 16
13 C -0.47 -28.66 9.52 23.55 0.22 -28.44 16
14 H 0.09 5.37 7.85 -2.91 -0.02 5.35 16
15 C 0.02 1.19 5.49 85.27 0.47 1.66 16
16 N -0.82 -48.68 11.98 21.82 0.26 -48.41 16
17 Si 1.01 41.40 29.56 68.60 2.03 43.43 16
18 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16
19 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16
20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16
21 N -0.46 -29.57 10.49 -60.23 -0.63 -30.20 16
22 O 0.01 0.56 11.28 73.54 0.83 1.39 16
23 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16
24 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16
25 H 0.08 1.21 7.66 -2.39 -0.02 1.19 16
26 H 0.15 2.84 6.30 -2.91 -0.02 2.82 16
27 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16
28 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16
29 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16
30 H 0.12 3.65 8.05 -2.39 -0.02 3.63 16
31 H 0.11 3.48 7.68 -2.39 -0.02 3.47 16
32 H 0.29 15.33 8.29 -92.71 -0.77 14.56 16
Total: -1.00 -79.71 288.21 3.81 -75.91
By element:
Atomic # 1 Polarization: 13.46 SS G_CDS: 1.15 Total: 14.61 kcal
Atomic # 6 Polarization: -16.08 SS G_CDS: 4.60 Total: -11.47 kcal
Atomic # 7 Polarization: -108.58 SS G_CDS: -3.91 Total: -112.49 kcal
Atomic # 8 Polarization: -9.92 SS G_CDS: -0.06 Total: -9.98 kcal
Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal
Total: -79.71 3.81 -75.91 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000073641301.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.996 kcal
(2) G-P(sol) polarization free energy of solvation -79.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.282 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.089 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds