Wall clock time and date at job start Mon Mar 30 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00131 * 2 1 4 4 C 1.38756 * 120.05096 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94212 * 179.71799 * 4 3 2 6 6 C 1.38294 * 120.05499 * 0.28466 * 5 4 3 7 7 C 1.38232 * 120.11124 * 359.97438 * 6 5 4 8 8 C 1.38173 * 120.05823 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.02920 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47032 * 265.00110 * 9 8 7 11 11 N 1.30751 * 126.28339 * 89.71679 * 10 9 8 12 12 C 1.36362 * 105.50698 * 179.86710 * 11 10 9 13 13 C 1.41737 * 126.58694 * 180.12893 * 12 11 10 14 14 H 1.08003 * 119.99622 * 0.29579 * 13 12 11 15 15 C 1.39963 * 120.00073 * 180.29488 * 13 12 11 16 16 N 1.30746 * 120.00143 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00066 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47191 * 59.99721 * 17 15 13 19 19 H 1.48506 * 109.46964 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47017 * 299.99890 * 17 15 13 21 21 N 1.31867 * 106.82557 * 0.39316 * 12 11 10 22 22 O 1.21271 * 109.89506 * 359.75621 * 21 12 11 23 23 H 1.08994 * 109.46928 * 60.00366 * 1 2 3 24 24 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46950 * 300.00206 * 1 2 3 26 26 H 1.08002 * 120.03223 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.97249 * 180.25614 * 5 4 3 28 28 H 1.08003 * 119.94130 * 180.02562 * 6 5 4 29 29 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.47189 * 25.00071 * 9 8 7 31 31 H 1.08989 * 109.47128 * 144.99802 * 9 8 7 32 32 H 0.97000 * 120.00250 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0054 6 6 3.3019 3.6758 0.0058 7 6 4.0559 2.5173 0.0010 8 6 3.4311 1.2849 -0.0039 9 6 4.2537 0.0222 -0.0086 10 6 4.4244 -0.4608 -1.4259 11 7 5.3890 -0.1312 -2.2448 12 6 5.1326 -0.8072 -3.4009 13 6 5.9058 -0.7738 -4.5884 14 1 6.8008 -0.1709 -4.6331 15 6 5.5096 -1.5221 -5.7028 16 7 4.4259 -2.2516 -5.6488 17 14 6.5283 -1.4775 -7.2680 18 1 7.9013 -1.9638 -6.9791 19 1 5.8993 -2.3488 -8.2930 20 1 6.5936 -0.0837 -7.7765 21 7 4.0240 -1.4936 -3.2040 22 8 3.6137 -1.3010 -2.0791 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2127 2.3204 -0.0005 27 1 1.3339 4.5113 0.0091 28 1 3.7921 4.6382 0.0109 29 1 5.1344 2.5754 0.0018 30 1 5.2324 0.2246 0.4267 31 1 3.7468 -0.7439 0.5778 32 1 4.1515 -2.7705 -6.4210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073641301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:55 Heat of formation + Delta-G solvation = 18.088823 kcal Electronic energy + Delta-G solvation = -18815.291937 eV Core-core repulsion = 15743.192651 eV Total energy + Delta-G solvation = -3072.099286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.21501 -41.13859 -38.34810 -36.40845 -35.53338 -34.25597 -31.75774 -31.00676 -28.75975 -28.41135 -27.70101 -23.86985 -23.31142 -22.97443 -22.06034 -19.29817 -18.85125 -18.11695 -17.71022 -17.18172 -16.69960 -16.56084 -16.34826 -15.46835 -15.33340 -14.90727 -14.62423 -14.24096 -13.62709 -13.46369 -13.08971 -13.05501 -12.95427 -12.85725 -12.38965 -12.16291 -12.08865 -11.98841 -11.96090 -11.80372 -11.14535 -11.10503 -10.13319 -9.82770 -9.09857 -8.63223 -6.78522 0.30247 0.51057 1.07043 1.36234 1.37975 1.52580 2.06928 2.19913 2.42882 2.61943 3.00853 3.23177 3.58412 3.78261 3.93919 4.13984 4.28993 4.40569 4.41514 4.48292 4.55554 4.58172 4.70100 4.73989 4.81503 5.00316 5.18518 5.28035 5.38063 5.49935 5.60366 5.79191 5.90135 6.17247 6.47390 6.49418 6.76304 8.35326 8.47726 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.005378 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.212872 B = 5204.973037 C = 5575.291848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.121 3.879 4 C -0.218 4.218 5 C -0.078 4.078 6 C -0.164 4.164 7 C -0.074 4.074 8 C -0.142 4.142 9 C 0.037 3.963 10 C 0.150 3.850 11 N -0.543 5.543 12 C 0.257 3.743 13 C -0.471 4.471 14 H 0.093 0.907 15 C 0.021 3.979 16 N -0.815 5.815 17 Si 1.010 2.990 18 H -0.254 1.254 19 H -0.265 1.265 20 H -0.255 1.255 21 N -0.464 5.464 22 O 0.010 5.990 23 H 0.053 0.947 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 9.366 11.523 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.247 6.247 3 C 0.076 3.924 4 C -0.237 4.237 5 C -0.096 4.096 6 C -0.182 4.182 7 C -0.092 4.092 8 C -0.144 4.144 9 C -0.001 4.001 10 C -0.072 4.072 11 N -0.283 5.283 12 C 0.005 3.995 13 C -0.511 4.511 14 H 0.112 0.888 15 C -0.196 4.196 16 N -0.444 5.444 17 Si 0.828 3.172 18 H -0.178 1.178 19 H -0.189 1.189 20 H -0.179 1.179 21 N -0.195 5.195 22 O -0.029 6.029 23 H 0.072 0.928 24 H 0.129 0.871 25 H 0.096 0.904 26 H 0.167 0.833 27 H 0.174 0.826 28 H 0.167 0.833 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.724 8.720 10.858 15.465 hybrid contribution 0.008 -0.200 -0.647 0.678 sum -6.716 8.520 10.211 14.898 Atomic orbital electron populations 1.23297 0.76699 1.05250 1.02097 1.86112 1.23321 1.26960 1.88274 1.19154 0.91941 0.85338 0.96005 1.21517 1.01094 0.91977 1.09083 1.21366 0.94880 0.97680 0.95696 1.21378 0.94348 0.98785 1.03702 1.21186 1.00939 0.91020 0.96069 1.19084 0.90888 0.95220 1.09167 1.18853 1.02522 0.95425 0.83324 1.28919 0.87420 0.91640 0.99236 1.72127 1.26486 1.27237 1.02498 1.22961 0.91601 0.90891 0.94056 1.18813 1.09913 1.28479 0.93942 0.88844 1.27025 0.96203 0.92358 1.03981 1.69990 1.21558 1.20673 1.32198 0.84859 0.78275 0.79673 0.74351 1.17787 1.18935 1.17945 1.75551 1.18130 1.29822 0.95996 1.85123 1.46410 1.51490 1.19873 0.92813 0.87102 0.90351 0.83265 0.82638 0.83254 0.84397 0.85809 0.87027 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.33 -10.48 9.63 -92.47 -0.89 -11.37 16 3 C 0.12 3.76 6.66 22.51 0.15 3.91 16 4 C -0.22 -5.39 9.04 22.37 0.20 -5.19 16 5 C -0.08 -1.70 10.04 22.26 0.22 -1.47 16 6 C -0.16 -3.83 10.04 22.28 0.22 -3.61 16 7 C -0.07 -2.10 9.68 22.25 0.22 -1.89 16 8 C -0.14 -4.62 5.13 -19.77 -0.10 -4.72 16 9 C 0.04 1.30 5.70 29.10 0.17 1.47 16 10 C 0.15 7.33 7.71 88.33 0.68 8.01 16 11 N -0.54 -30.33 11.62 -304.65 -3.54 -33.87 16 12 C 0.26 16.19 7.70 134.75 1.04 17.23 16 13 C -0.47 -28.66 9.52 23.55 0.22 -28.44 16 14 H 0.09 5.37 7.85 -2.91 -0.02 5.35 16 15 C 0.02 1.19 5.49 85.27 0.47 1.66 16 16 N -0.82 -48.68 11.98 21.82 0.26 -48.41 16 17 Si 1.01 41.40 29.56 68.60 2.03 43.43 16 18 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 19 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 N -0.46 -29.57 10.49 -60.23 -0.63 -30.20 16 22 O 0.01 0.56 11.28 73.54 0.83 1.39 16 23 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 24 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.08 1.21 7.66 -2.39 -0.02 1.19 16 26 H 0.15 2.84 6.30 -2.91 -0.02 2.82 16 27 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 29 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 30 H 0.12 3.65 8.05 -2.39 -0.02 3.63 16 31 H 0.11 3.48 7.68 -2.39 -0.02 3.47 16 32 H 0.29 15.33 8.29 -92.71 -0.77 14.56 16 Total: -1.00 -79.71 288.21 3.81 -75.91 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.15 Total: 14.61 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.60 Total: -11.47 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.91 Total: -112.49 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.06 Total: -9.98 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -79.71 3.81 -75.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.996 kcal (2) G-P(sol) polarization free energy of solvation -79.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds