Wall clock time and date at job start Mon Mar 30 2020 05:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99827 * 2 1 4 4 H 1.48498 * 109.47116 * 270.00077 * 3 2 1 5 5 H 1.48499 * 109.46833 * 29.99935 * 3 2 1 6 6 H 1.48499 * 109.46893 * 150.00126 * 3 2 1 7 7 C 1.37877 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99762 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00023 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99796 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00413 * 179.97438 * 11 10 9 14 14 H 1.08998 * 109.38887 * 299.81049 * 13 11 10 15 15 C 1.52904 * 109.38733 * 59.50766 * 13 11 10 16 16 N 1.47164 * 108.50208 * 170.55064 * 15 13 11 17 17 C 1.46632 * 110.25307 * 288.73509 * 16 15 13 18 18 C 1.50623 * 110.49509 * 52.51400 * 17 16 15 19 19 C 1.38743 * 118.42606 * 162.60970 * 18 17 16 20 20 C 1.38014 * 120.37763 * 179.70364 * 19 18 17 21 21 C 1.38260 * 119.87043 * 359.80744 * 20 19 18 22 22 C 1.38035 * 119.82486 * 0.57983 * 21 20 19 23 23 C 1.37823 * 121.85207 * 342.48442 * 18 17 16 24 24 H 0.97000 * 119.99997 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47330 * 59.99774 * 9 7 2 26 26 H 1.08993 * 109.47056 * 299.99125 * 9 7 2 27 27 H 0.97000 * 120.00368 * 0.02562 * 10 9 7 28 28 H 1.08990 * 109.63339 * 290.25947 * 15 13 11 29 29 H 1.09002 * 109.62788 * 50.85236 * 15 13 11 30 30 H 1.00903 * 110.99831 * 52.15547 * 16 15 13 31 31 H 1.09002 * 109.27367 * 172.77430 * 17 16 15 32 32 H 1.08998 * 109.27153 * 292.28464 * 17 16 15 33 33 H 1.08004 * 119.80779 * 359.72885 * 19 18 17 34 34 H 1.08002 * 120.06254 * 180.02562 * 20 19 18 35 35 H 1.07993 * 120.08661 * 180.31241 * 21 20 19 36 36 H 1.08002 * 119.82885 * 179.67902 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1049 0.0011 13 6 2.7332 -6.0287 0.0005 14 1 3.3562 -5.9717 -0.8921 15 6 3.6203 -5.9388 1.2426 16 7 4.4086 -7.1773 1.3443 17 6 3.5444 -8.2991 1.7251 18 6 2.3590 -8.3892 0.8003 19 6 1.6381 -9.5742 0.7642 20 6 0.5411 -9.6987 -0.0640 21 6 0.1549 -8.6361 -0.8598 22 6 0.8758 -7.4593 -0.8310 23 6 1.9779 -7.3330 0.0012 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6243 -2.5567 0.8903 27 1 3.1568 -3.4353 0.0009 28 1 4.2908 -5.0842 1.1527 29 1 2.9974 -5.8273 2.1301 30 1 4.8918 -7.3704 0.4798 31 1 4.1143 -9.2267 1.6710 32 1 3.1930 -8.1520 2.7464 33 1 1.9369 -10.4036 1.3880 34 1 -0.0166 -10.6233 -0.0878 35 1 -0.7059 -8.7281 -1.5054 36 1 0.5772 -6.6310 -1.4565 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087616925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:05 Heat of formation + Delta-G solvation = -17.043551 kcal Electronic energy + Delta-G solvation = -19047.020538 eV Core-core repulsion = 16109.230893 eV Total energy + Delta-G solvation = -2937.789646 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56014 -38.37991 -36.51757 -34.28954 -32.63859 -32.25811 -30.68455 -29.34765 -27.16131 -24.75898 -23.50993 -22.81721 -21.99385 -20.33629 -19.53935 -17.26151 -16.58571 -16.09032 -15.76434 -15.44773 -15.28604 -14.86578 -14.33304 -14.09815 -13.77114 -13.39996 -13.28273 -12.88434 -12.49660 -12.14837 -11.98805 -11.85336 -11.70289 -11.55751 -11.20087 -10.98871 -10.92004 -10.65517 -10.33667 -9.43326 -9.29350 -8.76591 -8.65865 -8.51135 -8.47786 -7.93300 -6.19232 -4.26472 1.39798 1.53214 3.22732 3.25744 3.29139 3.31483 3.77427 4.00202 4.22321 4.37175 4.62145 4.78342 4.91782 5.01387 5.09827 5.17154 5.20243 5.33291 5.49592 5.53393 5.59737 5.73050 5.78940 5.92848 6.12935 6.17891 6.44777 6.63898 6.72111 6.77776 7.11322 7.18278 7.26604 7.37324 7.47410 7.62711 7.93587 8.56219 8.73692 9.02687 9.40311 10.90932 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033719 B = 0.004568 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.201378 B = 6127.762223 C = 6795.779525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.708 5.708 11 C 0.505 3.495 12 O -0.545 6.545 13 C -0.109 4.109 14 H 0.103 0.897 15 C 0.066 3.934 16 N -0.674 5.674 17 C 0.095 3.905 18 C -0.117 4.117 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.071 4.071 23 C -0.067 4.067 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.391 0.609 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.343 0.657 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 -17.008 0.313 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.356 5.356 11 C 0.288 3.712 12 O -0.424 6.424 13 C -0.132 4.132 14 H 0.121 0.879 15 C -0.065 4.065 16 N -0.300 5.300 17 C -0.035 4.035 18 C -0.118 4.118 19 C -0.146 4.146 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.089 4.089 23 C -0.067 4.067 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.223 0.777 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.160 0.840 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.630 -16.860 0.992 18.144 hybrid contribution 0.109 0.907 -0.918 1.295 sum 6.739 -15.953 0.074 17.318 Atomic orbital electron populations 1.69973 1.06139 1.27347 1.48832 1.24951 0.94901 0.99473 0.94636 0.86414 0.79658 0.82615 0.78233 1.20459 1.20991 1.19679 1.21215 0.93276 0.90405 1.53326 0.91850 1.19119 0.88282 0.81928 0.97744 1.46460 1.11165 1.05926 1.72023 1.20074 0.89184 0.84134 0.77763 1.90671 1.16710 1.84358 1.50668 1.20996 0.97708 0.92493 1.01966 0.87916 1.22098 0.94960 0.93277 0.96117 1.61037 1.27812 1.02777 1.38409 1.20979 0.90174 0.94565 0.97797 1.20391 0.99167 0.93933 0.98358 1.20914 0.96485 0.97079 1.00108 1.21052 0.97080 0.98677 0.96965 1.21119 1.00099 0.93485 1.00138 1.21329 0.93306 0.96754 0.97544 1.19073 0.96912 0.93286 0.97473 0.92424 0.95555 0.95499 0.77657 0.89101 0.89936 0.83971 0.89677 0.89583 0.86347 0.86440 0.86268 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 10 N -0.71 -14.44 5.45 -61.48 -0.33 -14.77 16 11 C 0.51 9.84 6.84 -10.99 -0.08 9.76 16 12 O -0.55 -12.79 13.65 5.56 0.08 -12.71 16 13 C -0.11 -1.58 2.69 -92.97 -0.25 -1.83 16 14 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 15 C 0.07 0.83 5.73 -3.73 -0.02 0.81 16 16 N -0.67 -7.27 6.96 -115.16 -0.80 -8.08 16 17 C 0.09 1.00 6.34 -5.16 -0.03 0.97 16 18 C -0.12 -1.51 5.79 -104.62 -0.61 -2.11 16 19 C -0.13 -1.50 9.65 -39.48 -0.38 -1.88 16 20 C -0.12 -1.45 10.05 -39.66 -0.40 -1.85 16 21 C -0.13 -1.81 10.05 -39.65 -0.40 -2.20 16 22 C -0.07 -1.15 8.10 -39.49 -0.32 -1.47 16 23 C -0.07 -1.01 5.28 -104.60 -0.55 -1.56 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.39 6.78 7.92 -40.82 -0.32 6.46 16 28 H 0.09 1.04 7.83 -51.93 -0.41 0.63 16 29 H 0.08 1.19 8.02 -51.93 -0.42 0.77 16 30 H 0.34 3.21 8.74 -39.29 -0.34 2.87 16 31 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 2.31 6.52 -52.49 -0.34 1.97 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -31.65 300.68 -9.04 -40.69 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.75 Total: 7.97 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.48 Total: -8.08 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.40 Total: -48.06 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.65 -9.04 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087616925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.649 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds