Wall clock time and date at job start Mon Mar 30 2020 05:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99827 * 2 1 4 4 H 1.48498 * 109.47116 * 270.00077 * 3 2 1 5 5 H 1.48499 * 109.46833 * 29.99935 * 3 2 1 6 6 H 1.48499 * 109.46893 * 150.00126 * 3 2 1 7 7 C 1.37877 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99762 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00023 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99796 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00413 * 179.97438 * 11 10 9 14 14 H 1.08998 * 109.38887 * 299.81049 * 13 11 10 15 15 C 1.52904 * 109.38733 * 59.50766 * 13 11 10 16 16 N 1.47164 * 108.50208 * 170.55064 * 15 13 11 17 17 C 1.46632 * 110.25307 * 288.73509 * 16 15 13 18 18 C 1.50623 * 110.49509 * 52.51400 * 17 16 15 19 19 C 1.38743 * 118.42606 * 162.60970 * 18 17 16 20 20 C 1.38014 * 120.37763 * 179.70364 * 19 18 17 21 21 C 1.38260 * 119.87043 * 359.80744 * 20 19 18 22 22 C 1.38035 * 119.82486 * 0.57983 * 21 20 19 23 23 C 1.37823 * 121.85207 * 342.48442 * 18 17 16 24 24 H 0.97000 * 119.99997 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47330 * 59.99774 * 9 7 2 26 26 H 1.08993 * 109.47056 * 299.99125 * 9 7 2 27 27 H 0.97000 * 120.00368 * 0.02562 * 10 9 7 28 28 H 1.08990 * 109.63339 * 290.25947 * 15 13 11 29 29 H 1.09002 * 109.62788 * 50.85236 * 15 13 11 30 30 H 1.00903 * 110.99831 * 52.15547 * 16 15 13 31 31 H 1.09002 * 109.27367 * 172.77430 * 17 16 15 32 32 H 1.08998 * 109.27153 * 292.28464 * 17 16 15 33 33 H 1.08004 * 119.80779 * 359.72885 * 19 18 17 34 34 H 1.08002 * 120.06254 * 180.02562 * 20 19 18 35 35 H 1.07993 * 120.08661 * 180.31241 * 21 20 19 36 36 H 1.08002 * 119.82885 * 179.67902 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1049 0.0011 13 6 2.7332 -6.0287 0.0005 14 1 3.3562 -5.9717 -0.8921 15 6 3.6203 -5.9388 1.2426 16 7 4.4086 -7.1773 1.3443 17 6 3.5444 -8.2991 1.7251 18 6 2.3590 -8.3892 0.8003 19 6 1.6381 -9.5742 0.7642 20 6 0.5411 -9.6987 -0.0640 21 6 0.1549 -8.6361 -0.8598 22 6 0.8758 -7.4593 -0.8310 23 6 1.9779 -7.3330 0.0012 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6243 -2.5567 0.8903 27 1 3.1568 -3.4353 0.0009 28 1 4.2908 -5.0842 1.1527 29 1 2.9974 -5.8273 2.1301 30 1 4.8918 -7.3704 0.4798 31 1 4.1143 -9.2267 1.6710 32 1 3.1930 -8.1520 2.7464 33 1 1.9369 -10.4036 1.3880 34 1 -0.0166 -10.6233 -0.0878 35 1 -0.7059 -8.7281 -1.5054 36 1 0.5772 -6.6310 -1.4565 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087616925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:05 Heat of formation + Delta-G solvation = -40.464664 kcal Electronic energy + Delta-G solvation = -19048.036154 eV Core-core repulsion = 16109.230893 eV Total energy + Delta-G solvation = -2938.805262 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.77128 -39.83867 -37.52584 -36.20627 -34.40659 -33.62138 -31.67867 -30.58018 -29.00788 -25.97713 -24.63082 -24.43769 -23.24636 -21.70057 -20.88369 -19.01406 -17.70390 -17.59771 -17.05994 -16.93333 -16.63155 -16.19303 -15.92834 -15.39224 -15.04115 -14.66349 -14.52884 -14.12468 -14.03825 -13.79197 -13.58781 -13.00559 -12.93730 -12.83679 -12.71463 -12.53610 -12.24188 -12.19888 -11.73887 -11.49930 -10.84091 -10.80703 -9.87602 -9.70783 -9.56519 -9.47861 -8.30393 -6.47226 0.36442 0.48404 1.43064 1.45292 1.56707 1.67451 2.29083 2.49885 2.85596 3.04852 3.24670 3.51276 3.79485 3.87231 3.94225 4.07549 4.18880 4.24896 4.47565 4.59841 4.63289 4.71522 4.79344 4.95614 5.06584 5.12851 5.15138 5.21143 5.45343 5.47595 5.60045 5.63897 5.68785 5.82600 5.83339 6.10392 6.40189 6.63458 6.85359 7.21835 7.43396 8.81844 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033719 B = 0.004568 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.201378 B = 6127.762223 C = 6795.779525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.268 3.732 10 N -0.701 5.701 11 C 0.502 3.498 12 O -0.590 6.590 13 C -0.092 4.092 14 H 0.126 0.874 15 C 0.073 3.927 16 N -0.665 5.665 17 C 0.095 3.905 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.145 4.145 22 C -0.103 4.103 23 C -0.091 4.091 24 H 0.268 0.732 25 H -0.014 1.014 26 H -0.014 1.014 27 H 0.409 0.591 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.355 0.645 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.128 0.872 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -18.393 1.100 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.351 5.351 11 C 0.288 3.712 12 O -0.471 6.471 13 C -0.115 4.115 14 H 0.143 0.857 15 C -0.058 4.058 16 N -0.292 5.292 17 C -0.034 4.034 18 C -0.120 4.120 19 C -0.142 4.142 20 C -0.136 4.136 21 C -0.163 4.163 22 C -0.121 4.121 23 C -0.092 4.092 24 H 0.077 0.923 25 H 0.004 0.996 26 H 0.004 0.996 27 H 0.245 0.755 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.146 0.854 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.601 -18.282 1.773 20.725 hybrid contribution -0.875 1.207 -1.168 1.894 sum 8.725 -17.075 0.606 19.184 Atomic orbital electron populations 1.70142 1.08351 1.28565 1.50035 1.26070 0.95735 1.03941 0.93803 0.85157 0.78564 0.76912 0.78599 1.19621 1.21054 1.17723 1.21616 0.94370 0.90452 1.52849 0.89629 1.18534 0.88667 0.84352 0.93962 1.46160 1.11200 1.05224 1.72496 1.21025 0.89571 0.84769 0.75796 1.90652 1.19258 1.85076 1.52121 1.20967 0.96547 0.89862 1.04150 0.85663 1.22034 0.94668 0.95096 0.93964 1.61047 1.27052 1.02057 1.39021 1.21125 0.89582 0.95730 0.96981 1.20723 1.00013 0.93558 0.97697 1.21379 0.95603 0.97563 0.99642 1.21436 0.97242 0.99019 0.95860 1.21328 1.00353 0.93523 1.01063 1.21241 0.95176 0.96960 0.98724 1.19219 0.97240 0.94195 0.98511 0.92277 0.99604 0.99606 0.75527 0.87541 0.91897 0.82615 0.86508 0.89566 0.82726 0.83336 0.85448 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.98 42.18 29.54 68.60 2.03 44.21 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.56 -30.08 9.28 25.60 0.24 -29.84 16 8 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.75 5.43 85.63 0.46 15.21 16 10 N -0.70 -29.52 5.45 -466.80 -2.54 -32.06 16 11 C 0.50 20.43 6.84 87.66 0.60 21.03 16 12 O -0.59 -29.70 13.65 -3.04 -0.04 -29.74 16 13 C -0.09 -2.65 2.69 -12.31 -0.03 -2.69 16 14 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 15 C 0.07 1.73 5.73 86.22 0.49 2.22 16 16 N -0.66 -12.26 6.96 -518.26 -3.61 -15.87 16 17 C 0.10 1.69 6.34 85.58 0.54 2.23 16 18 C -0.12 -2.79 5.79 -19.87 -0.12 -2.90 16 19 C -0.12 -2.52 9.65 22.34 0.22 -2.30 16 20 C -0.12 -2.59 10.05 22.22 0.22 -2.37 16 21 C -0.14 -4.04 10.05 22.23 0.22 -3.82 16 22 C -0.10 -3.46 8.10 22.33 0.18 -3.28 16 23 C -0.09 -2.73 5.28 -19.85 -0.10 -2.83 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 26 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 27 H 0.41 14.02 7.92 -92.71 -0.73 13.29 16 28 H 0.11 2.18 7.83 -2.39 -0.02 2.16 16 29 H 0.06 1.76 8.02 -2.39 -0.02 1.74 16 30 H 0.35 5.35 8.74 -89.69 -0.78 4.57 16 31 H 0.12 1.39 8.13 -2.39 -0.02 1.37 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.10 3.81 6.52 -2.91 -0.02 3.79 16 Total: -1.00 -73.08 300.68 -0.90 -73.99 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.41 Total: 24.36 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 3.39 Total: -8.65 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -5.87 Total: -104.16 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.04 Total: -29.74 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -73.08 -0.90 -73.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087616925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.521 kcal (2) G-P(sol) polarization free energy of solvation -73.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds