Wall clock time and date at job start Mon Mar 30 2020 05:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00024 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99795 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00159 * 179.97438 * 11 10 9 14 14 H 1.08997 * 109.38801 * 59.80454 * 13 11 10 15 15 C 1.52902 * 109.39296 * 300.00149 * 13 11 10 16 16 N 1.47157 * 108.49218 * 189.43680 * 15 13 11 17 17 C 1.46631 * 110.25443 * 71.29225 * 16 15 13 18 18 C 1.50619 * 110.50034 * 307.53257 * 17 16 15 19 19 C 1.38736 * 118.42354 * 197.33287 * 18 17 16 20 20 C 1.38022 * 120.37925 * 180.16293 * 19 18 17 21 21 C 1.38254 * 119.86868 * 0.03607 * 20 19 18 22 22 C 1.38045 * 119.82873 * 359.90775 * 21 20 19 23 23 C 1.37833 * 121.85729 * 17.38403 * 18 17 16 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 26 26 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 27 27 H 0.97000 * 119.99741 * 359.97438 * 10 9 7 28 28 H 1.08993 * 109.63092 * 309.14314 * 15 13 11 29 29 H 1.09000 * 109.62984 * 69.53770 * 15 13 11 30 30 H 1.00902 * 111.00310 * 194.71484 * 16 15 13 31 31 H 1.08999 * 109.26941 * 67.79567 * 17 16 15 32 32 H 1.09002 * 109.27146 * 187.30752 * 17 16 15 33 33 H 1.07999 * 119.81315 * 0.18183 * 19 18 17 34 34 H 1.07998 * 120.06570 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.08905 * 179.88906 * 21 20 19 36 36 H 1.07998 * 119.82757 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2030 -3.6127 -0.0119 11 6 1.7537 -4.8834 -0.0125 12 8 0.5613 -5.1050 -0.0085 13 6 2.7329 -6.0289 -0.0193 14 1 3.3651 -5.9697 0.8666 15 6 3.6053 -5.9436 -1.2722 16 7 4.3923 -7.1825 -1.3782 17 6 3.5240 -8.3057 -1.7450 18 6 2.3484 -8.3918 -0.8074 19 6 1.6272 -9.5760 -0.7596 20 6 0.5406 -9.6980 0.0827 21 6 0.1673 -8.6345 0.8834 22 6 0.8845 -7.4559 0.8380 23 6 1.9775 -7.3331 -0.0066 24 1 -0.4849 0.8401 0.0041 25 1 0.6280 -2.5591 0.8866 26 1 0.6206 -2.5548 -0.8933 27 1 3.1566 -3.4354 -0.0155 28 1 2.9720 -5.8354 -2.1527 29 1 4.2744 -5.0866 -1.1948 30 1 5.1459 -7.0766 -2.0407 31 1 3.1622 -8.1630 -2.7633 32 1 4.0941 -9.2332 -1.6925 33 1 1.9178 -10.4072 -1.3849 34 1 -0.0170 -10.6223 0.1161 35 1 -0.6835 -8.7255 1.5424 36 1 0.5931 -6.6253 1.4637 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087616926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:08 Heat of formation + Delta-G solvation = -14.710116 kcal Electronic energy + Delta-G solvation = -19023.032182 eV Core-core repulsion = 16085.343721 eV Total energy + Delta-G solvation = -2937.688461 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39647 -38.32688 -36.43323 -34.26579 -32.63694 -32.23894 -30.84418 -29.31623 -27.14808 -24.82271 -23.47752 -22.80826 -21.92265 -20.13052 -19.18270 -17.38766 -16.51624 -16.13652 -15.84631 -15.33620 -15.09390 -14.70086 -14.44084 -14.11297 -13.94818 -13.59379 -12.89037 -12.86966 -12.61686 -12.36207 -12.06326 -11.93658 -11.68642 -11.42997 -10.97425 -10.95231 -10.74175 -10.51050 -10.32598 -9.40303 -9.05113 -8.83694 -8.76123 -8.47313 -8.33668 -7.91268 -6.18918 -4.25893 1.50398 1.60916 3.22021 3.27553 3.29299 3.32196 3.85389 3.98227 4.22125 4.38179 4.68273 4.76134 5.05310 5.11926 5.17544 5.23384 5.28340 5.36783 5.38050 5.58151 5.62889 5.66615 5.90395 5.92119 6.19390 6.24820 6.54109 6.68554 6.77142 6.82059 7.14994 7.24784 7.29053 7.39824 7.48832 7.64035 7.94411 8.58493 8.75087 9.05254 9.40895 10.91319 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033429 B = 0.004569 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.386841 B = 6126.367130 C = 6804.008118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.709 5.709 11 C 0.502 3.498 12 O -0.545 6.545 13 C -0.067 4.067 14 H 0.110 0.890 15 C 0.064 3.936 16 N -0.682 5.682 17 C 0.097 3.903 18 C -0.079 4.079 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.074 4.074 23 C -0.055 4.055 24 H 0.265 0.735 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.391 0.609 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.348 0.652 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.692 -16.599 -2.011 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.286 3.714 12 O -0.423 6.423 13 C -0.088 4.088 14 H 0.127 0.873 15 C -0.065 4.065 16 N -0.313 5.313 17 C -0.032 4.032 18 C -0.080 4.080 19 C -0.149 4.149 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.056 4.056 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.223 0.777 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.166 0.834 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.647 -16.719 -1.342 18.042 hybrid contribution 0.564 1.255 -0.938 1.666 sum 7.211 -15.464 -2.281 17.214 Atomic orbital electron populations 1.69988 1.06127 1.27211 1.48953 1.24956 0.94904 0.99474 0.94674 0.86364 0.79848 0.82956 0.77767 1.19598 1.20810 1.20775 1.21261 0.93306 0.90415 1.53147 0.91815 1.19123 0.88312 0.81961 0.97759 1.46471 1.11146 1.05978 1.72078 1.20209 0.89294 0.84229 0.77704 1.90671 1.16670 1.84401 1.50601 1.20261 0.96053 0.91758 1.00759 0.87269 1.21896 0.95841 0.92579 0.96219 1.60559 1.12361 1.03954 1.54389 1.20781 0.91988 0.95076 0.95396 1.19460 0.96824 0.93910 0.97759 1.20846 0.96738 0.96921 1.00363 1.20992 0.97227 0.98696 0.96950 1.21101 1.00189 0.93461 1.00113 1.21326 0.93397 0.96847 0.97673 1.19046 0.96141 0.93531 0.96845 0.92492 0.95494 0.95538 0.77668 0.93813 0.89403 0.83399 0.93843 0.89535 0.86478 0.86446 0.86285 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 10 N -0.71 -14.63 5.45 -61.47 -0.34 -14.96 16 11 C 0.50 9.97 6.82 -10.99 -0.07 9.90 16 12 O -0.54 -12.89 13.67 5.55 0.08 -12.81 16 13 C -0.07 -1.03 2.81 -92.97 -0.26 -1.29 16 14 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 15 C 0.06 0.84 5.70 -3.73 -0.02 0.81 16 16 N -0.68 -7.49 6.88 -115.17 -0.79 -8.28 16 17 C 0.10 1.07 6.34 -5.16 -0.03 1.03 16 18 C -0.08 -1.10 5.79 -104.63 -0.61 -1.70 16 19 C -0.13 -1.61 9.65 -39.48 -0.38 -1.99 16 20 C -0.12 -1.51 10.05 -39.65 -0.40 -1.91 16 21 C -0.13 -1.86 10.05 -39.65 -0.40 -2.26 16 22 C -0.07 -1.24 8.09 -39.49 -0.32 -1.56 16 23 C -0.05 -0.88 5.27 -104.60 -0.55 -1.43 16 24 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.88 7.95 -40.82 -0.32 6.56 16 28 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 29 H 0.09 1.00 7.85 -51.93 -0.41 0.59 16 30 H 0.35 2.90 8.90 -39.29 -0.35 2.55 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.79 8.13 -51.93 -0.42 0.36 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.13 2.36 6.54 -52.49 -0.34 2.01 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -32.05 300.92 -9.05 -41.10 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.76 Total: 7.11 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.49 Total: -7.12 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.39 Total: -48.46 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.05 -9.05 -41.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087616926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.386 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds