Wall clock time and date at job start Mon Mar 30 2020 05:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00024 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99795 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00159 * 179.97438 * 11 10 9 14 14 H 1.08997 * 109.38801 * 59.80454 * 13 11 10 15 15 C 1.52902 * 109.39296 * 300.00149 * 13 11 10 16 16 N 1.47157 * 108.49218 * 189.43680 * 15 13 11 17 17 C 1.46631 * 110.25443 * 71.29225 * 16 15 13 18 18 C 1.50619 * 110.50034 * 307.53257 * 17 16 15 19 19 C 1.38736 * 118.42354 * 197.33287 * 18 17 16 20 20 C 1.38022 * 120.37925 * 180.16293 * 19 18 17 21 21 C 1.38254 * 119.86868 * 0.03607 * 20 19 18 22 22 C 1.38045 * 119.82873 * 359.90775 * 21 20 19 23 23 C 1.37833 * 121.85729 * 17.38403 * 18 17 16 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 26 26 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 27 27 H 0.97000 * 119.99741 * 359.97438 * 10 9 7 28 28 H 1.08993 * 109.63092 * 309.14314 * 15 13 11 29 29 H 1.09000 * 109.62984 * 69.53770 * 15 13 11 30 30 H 1.00902 * 111.00310 * 194.71484 * 16 15 13 31 31 H 1.08999 * 109.26941 * 67.79567 * 17 16 15 32 32 H 1.09002 * 109.27146 * 187.30752 * 17 16 15 33 33 H 1.07999 * 119.81315 * 0.18183 * 19 18 17 34 34 H 1.07998 * 120.06570 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.08905 * 179.88906 * 21 20 19 36 36 H 1.07998 * 119.82757 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2030 -3.6127 -0.0119 11 6 1.7537 -4.8834 -0.0125 12 8 0.5613 -5.1050 -0.0085 13 6 2.7329 -6.0289 -0.0193 14 1 3.3651 -5.9697 0.8666 15 6 3.6053 -5.9436 -1.2722 16 7 4.3923 -7.1825 -1.3782 17 6 3.5240 -8.3057 -1.7450 18 6 2.3484 -8.3918 -0.8074 19 6 1.6272 -9.5760 -0.7596 20 6 0.5406 -9.6980 0.0827 21 6 0.1673 -8.6345 0.8834 22 6 0.8845 -7.4559 0.8380 23 6 1.9775 -7.3331 -0.0066 24 1 -0.4849 0.8401 0.0041 25 1 0.6280 -2.5591 0.8866 26 1 0.6206 -2.5548 -0.8933 27 1 3.1566 -3.4354 -0.0155 28 1 2.9720 -5.8354 -2.1527 29 1 4.2744 -5.0866 -1.1948 30 1 5.1459 -7.0766 -2.0407 31 1 3.1622 -8.1630 -2.7633 32 1 4.0941 -9.2332 -1.6925 33 1 1.9178 -10.4072 -1.3849 34 1 -0.0170 -10.6223 0.1161 35 1 -0.6835 -8.7255 1.5424 36 1 0.5931 -6.6253 1.4637 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087616926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:08 Heat of formation + Delta-G solvation = -38.452570 kcal Electronic energy + Delta-G solvation = -19024.061732 eV Core-core repulsion = 16085.343721 eV Total energy + Delta-G solvation = -2938.718011 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.65927 -39.79484 -37.44784 -36.19875 -34.40736 -33.65235 -31.86397 -30.57172 -29.01065 -26.03319 -24.72748 -24.37643 -23.20943 -21.65704 -20.44099 -19.02929 -17.85755 -17.57578 -17.08947 -16.97159 -16.45318 -16.12852 -15.81772 -15.41123 -15.14013 -15.01136 -14.31366 -14.14741 -13.99747 -13.75658 -13.64131 -13.42917 -12.94860 -12.86075 -12.74601 -12.50027 -12.22799 -11.87415 -11.56996 -11.45367 -10.82800 -10.69453 -9.87216 -9.81304 -9.56821 -9.32632 -8.30328 -6.46959 0.43058 0.52212 1.43150 1.44095 1.57730 1.67211 2.29573 2.50885 2.89384 3.04953 3.19173 3.57986 3.71868 3.97004 4.07629 4.15383 4.20961 4.26744 4.48498 4.52743 4.63985 4.66466 4.80249 4.88136 5.07833 5.16364 5.16761 5.21829 5.46257 5.53169 5.62291 5.65243 5.71593 5.83015 5.83904 6.13179 6.49256 6.63884 6.85767 7.21957 7.43514 8.82176 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033429 B = 0.004569 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.386841 B = 6126.367130 C = 6804.008118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.702 5.702 11 C 0.501 3.499 12 O -0.588 6.588 13 C -0.054 4.054 14 H 0.122 0.878 15 C 0.071 3.929 16 N -0.677 5.677 17 C 0.096 3.904 18 C -0.088 4.088 19 C -0.127 4.127 20 C -0.118 4.118 21 C -0.144 4.144 22 C -0.106 4.106 23 C -0.083 4.083 24 H 0.268 0.732 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.408 0.592 28 H 0.028 0.972 29 H 0.106 0.894 30 H 0.367 0.633 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.129 0.871 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.523 -17.940 -3.053 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.287 3.713 12 O -0.468 6.468 13 C -0.076 4.076 14 H 0.140 0.860 15 C -0.060 4.060 16 N -0.310 5.310 17 C -0.033 4.033 18 C -0.088 4.088 19 C -0.145 4.145 20 C -0.136 4.136 21 C -0.162 4.162 22 C -0.124 4.124 23 C -0.084 4.084 24 H 0.077 0.923 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.244 0.756 28 H 0.046 0.954 29 H 0.124 0.876 30 H 0.188 0.812 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.147 0.853 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.542 -18.093 -2.393 20.594 hybrid contribution -0.396 1.542 -0.603 1.703 sum 9.145 -16.550 -2.996 19.145 Atomic orbital electron populations 1.70151 1.08342 1.28498 1.50089 1.26073 0.95745 1.03937 0.93826 0.85106 0.79178 0.77265 0.77640 1.17458 1.20490 1.20527 1.21648 0.94366 0.90442 1.52740 0.89645 1.18551 0.88675 0.84326 0.94028 1.46174 1.11202 1.05238 1.72504 1.21077 0.89612 0.84798 0.75798 1.90650 1.19103 1.85087 1.52010 1.20184 0.95117 0.89450 1.02824 0.86021 1.21807 0.95713 0.94529 0.93910 1.60494 1.12391 1.02818 1.55324 1.20913 0.91366 0.96205 0.94816 1.19882 0.97928 0.93637 0.97352 1.21318 0.95850 0.97341 0.99968 1.21399 0.97302 0.99087 0.95765 1.21325 1.00431 0.93412 1.01028 1.21251 0.95221 0.97142 0.98784 1.19218 0.96631 0.94465 0.98081 0.92276 0.99537 0.99533 0.75565 0.95414 0.87574 0.81212 0.92988 0.86616 0.82760 0.83161 0.85267 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.99 42.19 29.54 68.60 2.03 44.22 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.08 9.28 25.60 0.24 -29.84 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 9 C 0.27 14.76 5.43 85.63 0.46 15.22 16 10 N -0.70 -29.96 5.45 -466.79 -2.54 -32.50 16 11 C 0.50 20.86 6.82 87.66 0.60 21.46 16 12 O -0.59 -29.89 13.67 -3.04 -0.04 -29.93 16 13 C -0.05 -1.69 2.81 -12.31 -0.03 -1.72 16 14 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 15 C 0.07 1.72 5.70 86.22 0.49 2.21 16 16 N -0.68 -12.77 6.88 -518.29 -3.56 -16.33 16 17 C 0.10 1.78 6.34 85.58 0.54 2.32 16 18 C -0.09 -2.25 5.79 -19.87 -0.12 -2.36 16 19 C -0.13 -2.74 9.65 22.34 0.22 -2.53 16 20 C -0.12 -2.69 10.05 22.22 0.22 -2.47 16 21 C -0.14 -4.14 10.05 22.23 0.22 -3.91 16 22 C -0.11 -3.70 8.09 22.33 0.18 -3.52 16 23 C -0.08 -2.68 5.27 -19.85 -0.10 -2.78 16 24 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 25 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 26 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 27 H 0.41 14.30 7.95 -92.71 -0.74 13.56 16 28 H 0.03 0.77 8.02 -2.39 -0.02 0.75 16 29 H 0.11 2.16 7.85 -2.39 -0.02 2.15 16 30 H 0.37 4.72 8.90 -89.69 -0.80 3.92 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 1.53 8.13 -2.39 -0.02 1.51 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.10 3.93 6.54 -2.91 -0.02 3.92 16 Total: -1.00 -73.77 300.92 -0.88 -74.65 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.43 Total: 23.33 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 3.39 Total: -7.24 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -5.82 Total: -105.03 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.04 Total: -29.93 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -73.77 -0.88 -74.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087616926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.197 kcal (2) G-P(sol) polarization free energy of solvation -73.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds