Wall clock time and date at job start Mon Mar 30 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99989 * 2 1 4 4 H 1.48497 * 109.47394 * 270.00407 * 3 2 1 5 5 H 1.48508 * 109.46803 * 30.00165 * 3 2 1 6 6 H 1.48502 * 109.47070 * 150.00000 * 3 2 1 7 7 C 1.37871 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00291 * 172.89814 * 7 2 1 9 9 C 1.50699 * 119.99720 * 352.90524 * 7 2 1 10 10 C 1.53002 * 115.55343 * 84.75284 * 9 7 2 11 11 N 1.46496 * 109.47050 * 59.12069 * 10 9 7 12 12 N 1.40225 * 126.19307 * 268.31109 * 11 10 9 13 13 C 1.30966 * 107.91562 * 180.02562 * 12 11 10 14 14 C 1.41819 * 132.97894 * 180.02562 * 13 12 11 15 15 N 1.30754 * 119.65318 * 179.72519 * 14 13 12 16 16 C 1.33945 * 121.57561 * 0.27036 * 15 14 13 17 17 C 1.34487 * 121.58730 * 0.02562 * 16 15 14 18 18 N 1.37746 * 119.79905 * 359.97438 * 17 16 15 19 19 C 1.34492 * 133.00363 * 180.02562 * 18 17 16 20 20 O 1.21883 * 126.08219 * 359.97438 * 19 18 17 21 21 C 1.53005 * 117.49525 * 230.41930 * 9 7 2 22 22 C 1.53002 * 117.50136 * 299.07772 * 9 7 2 23 23 H 0.97005 * 120.00233 * 5.03086 * 1 2 3 24 24 H 1.09002 * 109.47009 * 299.12136 * 10 9 7 25 25 H 1.09001 * 109.47471 * 179.12211 * 10 9 7 26 26 H 1.07998 * 120.17180 * 359.97438 * 14 13 12 27 27 H 1.07995 * 119.20492 * 179.97438 * 16 15 14 28 28 H 1.07998 * 120.09787 * 179.97438 * 17 16 15 29 29 H 1.08997 * 117.49897 * 214.99877 * 21 9 7 30 30 H 1.08991 * 117.49946 * 0.02562 * 21 9 7 31 31 H 1.09004 * 117.49188 * 359.97438 * 22 9 7 32 32 H 1.08989 * 117.50036 * 144.97196 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0783 -1.1975 -0.1162 9 6 1.2597 -2.4941 0.1601 10 6 0.6776 -3.0845 -1.1258 11 7 1.7579 -3.3248 -2.0856 12 7 2.2086 -2.4297 -3.0663 13 6 3.1835 -3.0082 -3.7223 14 6 4.0042 -2.5908 -4.8009 15 7 4.9255 -3.3960 -5.2621 16 6 5.1139 -4.6164 -4.7433 17 6 4.3643 -5.0720 -3.7239 18 7 3.3760 -4.2741 -3.1910 19 6 2.4905 -4.4528 -2.1946 20 8 2.3791 -5.4506 -1.5036 21 6 1.7685 -3.4735 1.2198 22 6 0.4683 -2.6999 1.4533 23 1 -0.4851 0.8368 -0.0737 24 1 -0.0402 -2.3849 -1.5544 25 1 0.1766 -4.0257 -0.8994 26 1 3.8717 -1.6115 -5.2365 27 1 5.8858 -5.2502 -5.1541 28 1 4.5366 -6.0604 -3.3243 29 1 1.6884 -4.5382 1.0010 30 1 2.6416 -3.1771 1.8011 31 1 0.4869 -1.8950 2.1881 32 1 -0.4671 -3.2553 1.3879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090695037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:38 Heat of formation + Delta-G solvation = 123.518312 kcal Electronic energy + Delta-G solvation = -19394.304474 eV Core-core repulsion = 16359.069704 eV Total energy + Delta-G solvation = -3035.234770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.80710 -38.96209 -36.85407 -36.69247 -34.22261 -32.12202 -31.89781 -29.29458 -27.68451 -25.58833 -24.26633 -23.27847 -21.79254 -21.13571 -19.36009 -18.53395 -17.96071 -16.78157 -16.20210 -16.08764 -15.35921 -14.98348 -14.64067 -14.41358 -14.03364 -13.58643 -13.17522 -13.03934 -12.20117 -11.81773 -11.75383 -11.53168 -11.34527 -10.99046 -10.94707 -10.53669 -10.36030 -10.20619 -10.00789 -9.80223 -9.05935 -8.93063 -8.47143 -8.27049 -7.55607 -6.09816 -4.14632 0.43575 1.61350 1.87451 2.90605 3.18077 3.27619 3.34201 3.37860 3.52392 4.22171 4.26231 4.37433 4.45991 5.00717 5.19526 5.20451 5.25005 5.49273 5.90425 5.91500 6.05090 6.06591 6.26483 6.38257 6.51338 6.57868 6.75482 6.89927 6.98959 7.24338 7.42998 7.58540 7.82091 7.87351 8.25232 8.33289 8.83700 9.51233 10.98984 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.007883 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.154169 B = 3550.944313 C = 4463.916578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.485 4.485 8 H 0.054 0.946 9 C 0.018 3.982 10 C 0.190 3.810 11 N -0.381 5.381 12 N -0.195 5.195 13 C 0.187 3.813 14 C 0.194 3.806 15 N -0.439 5.439 16 C -0.026 4.026 17 C 0.095 3.905 18 N -0.478 5.478 19 C 0.635 3.365 20 O -0.547 6.547 21 C -0.206 4.206 22 C -0.143 4.143 23 H 0.262 0.738 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.193 0.807 27 H 0.175 0.825 28 H 0.172 0.828 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 -6.358 -8.598 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.125 4.125 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.017 3.983 10 C 0.071 3.929 11 N -0.199 5.199 12 N -0.023 5.023 13 C -0.082 4.082 14 C 0.000 4.000 15 N -0.150 5.150 16 C -0.161 4.161 17 C -0.027 4.027 18 N -0.196 5.196 19 C 0.336 3.664 20 O -0.421 6.421 21 C -0.244 4.244 22 C -0.181 4.181 23 H 0.072 0.928 24 H 0.125 0.875 25 H 0.089 0.911 26 H 0.210 0.790 27 H 0.192 0.808 28 H 0.189 0.811 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.103 -6.103 -8.372 11.549 hybrid contribution 0.387 0.020 0.750 0.845 sum 5.491 -6.082 -7.622 11.191 Atomic orbital electron populations 1.69933 1.05845 1.26990 1.48819 1.24896 0.94771 0.98794 0.94050 0.86634 0.79918 0.83443 0.78352 1.20307 1.21153 1.20032 1.20180 0.92704 0.88307 1.51042 0.92825 1.19201 0.99119 0.94585 0.85421 1.21596 0.83959 0.99855 0.87481 1.49352 1.32267 1.09289 1.29011 1.77768 1.09987 1.14150 1.00416 1.22732 1.00298 0.84701 1.00515 1.22924 0.88107 0.99965 0.89003 1.68051 1.16093 1.03850 1.26980 1.21857 1.02737 0.94372 0.97113 1.22537 0.87943 0.97193 0.95014 1.43687 1.29812 1.15464 1.30663 1.16548 0.81729 0.86129 0.81960 1.91072 1.72280 1.30563 1.48204 1.23064 0.98197 0.96182 1.06936 1.22524 0.92604 1.01147 1.01874 0.92827 0.87528 0.91099 0.79037 0.80779 0.81120 0.90902 0.90546 0.89587 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.77 12.96 55.43 0.72 -23.05 16 2 C 0.08 2.09 5.39 -17.82 -0.10 1.99 16 3 Si 0.89 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.48 -12.93 8.61 -34.44 -0.30 -13.23 16 8 H 0.05 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.02 0.44 1.59 -155.66 -0.25 0.19 16 10 C 0.19 4.23 6.22 -4.04 -0.03 4.20 16 11 N -0.38 -8.20 3.41 -65.20 -0.22 -8.42 16 12 N -0.20 -3.95 12.61 31.38 0.40 -3.55 16 13 C 0.19 3.15 7.92 -155.55 -1.23 1.92 16 14 C 0.19 2.50 11.37 -16.64 -0.19 2.31 16 15 N -0.44 -5.44 10.41 -12.99 -0.14 -5.58 16 16 C -0.03 -0.29 11.04 -17.96 -0.20 -0.49 16 17 C 0.09 1.21 11.01 -16.22 -0.18 1.03 16 18 N -0.48 -8.20 2.95 -66.42 -0.20 -8.40 16 19 C 0.64 13.15 8.73 -87.03 -0.76 12.39 16 20 O -0.55 -12.29 17.90 5.02 0.09 -12.20 16 21 C -0.21 -4.68 9.95 -26.69 -0.27 -4.95 16 22 C -0.14 -3.27 9.50 -26.69 -0.25 -3.53 16 23 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 24 H 0.11 2.47 8.14 -51.93 -0.42 2.05 16 25 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 26 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 32 H 0.07 1.40 8.14 -51.94 -0.42 0.98 16 LS Contribution 291.53 15.07 4.39 4.39 Total: -1.00 -31.11 291.53 -7.07 -38.18 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.35 Total: 0.94 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -3.74 Total: 1.83 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.56 Total: -49.00 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.11 -7.07 -38.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090695037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.700 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds