Wall clock time and date at job start Mon Mar 30 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99989 * 2 1 4 4 H 1.48497 * 109.47394 * 270.00407 * 3 2 1 5 5 H 1.48508 * 109.46803 * 30.00165 * 3 2 1 6 6 H 1.48502 * 109.47070 * 150.00000 * 3 2 1 7 7 C 1.37871 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00291 * 172.89814 * 7 2 1 9 9 C 1.50699 * 119.99720 * 352.90524 * 7 2 1 10 10 C 1.53002 * 115.55343 * 84.75284 * 9 7 2 11 11 N 1.46496 * 109.47050 * 59.12069 * 10 9 7 12 12 N 1.40225 * 126.19307 * 268.31109 * 11 10 9 13 13 C 1.30966 * 107.91562 * 180.02562 * 12 11 10 14 14 C 1.41819 * 132.97894 * 180.02562 * 13 12 11 15 15 N 1.30754 * 119.65318 * 179.72519 * 14 13 12 16 16 C 1.33945 * 121.57561 * 0.27036 * 15 14 13 17 17 C 1.34487 * 121.58730 * 0.02562 * 16 15 14 18 18 N 1.37746 * 119.79905 * 359.97438 * 17 16 15 19 19 C 1.34492 * 133.00363 * 180.02562 * 18 17 16 20 20 O 1.21883 * 126.08219 * 359.97438 * 19 18 17 21 21 C 1.53005 * 117.49525 * 230.41930 * 9 7 2 22 22 C 1.53002 * 117.50136 * 299.07772 * 9 7 2 23 23 H 0.97005 * 120.00233 * 5.03086 * 1 2 3 24 24 H 1.09002 * 109.47009 * 299.12136 * 10 9 7 25 25 H 1.09001 * 109.47471 * 179.12211 * 10 9 7 26 26 H 1.07998 * 120.17180 * 359.97438 * 14 13 12 27 27 H 1.07995 * 119.20492 * 179.97438 * 16 15 14 28 28 H 1.07998 * 120.09787 * 179.97438 * 17 16 15 29 29 H 1.08997 * 117.49897 * 214.99877 * 21 9 7 30 30 H 1.08991 * 117.49946 * 0.02562 * 21 9 7 31 31 H 1.09004 * 117.49188 * 359.97438 * 22 9 7 32 32 H 1.08989 * 117.50036 * 144.97196 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0783 -1.1975 -0.1162 9 6 1.2597 -2.4941 0.1601 10 6 0.6776 -3.0845 -1.1258 11 7 1.7579 -3.3248 -2.0856 12 7 2.2086 -2.4297 -3.0663 13 6 3.1835 -3.0082 -3.7223 14 6 4.0042 -2.5908 -4.8009 15 7 4.9255 -3.3960 -5.2621 16 6 5.1139 -4.6164 -4.7433 17 6 4.3643 -5.0720 -3.7239 18 7 3.3760 -4.2741 -3.1910 19 6 2.4905 -4.4528 -2.1946 20 8 2.3791 -5.4506 -1.5036 21 6 1.7685 -3.4735 1.2198 22 6 0.4683 -2.6999 1.4533 23 1 -0.4851 0.8368 -0.0737 24 1 -0.0402 -2.3849 -1.5544 25 1 0.1766 -4.0257 -0.8994 26 1 3.8717 -1.6115 -5.2365 27 1 5.8858 -5.2502 -5.1541 28 1 4.5366 -6.0604 -3.3243 29 1 1.6884 -4.5382 1.0010 30 1 2.6416 -3.1771 1.8011 31 1 0.4869 -1.8950 2.1881 32 1 -0.4671 -3.2553 1.3879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090695037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:38 Heat of formation + Delta-G solvation = 105.008308 kcal Electronic energy + Delta-G solvation = -19395.107128 eV Core-core repulsion = 16359.069704 eV Total energy + Delta-G solvation = -3036.037424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.17381 -40.24221 -38.56653 -38.26087 -35.53920 -34.03597 -33.37354 -30.53860 -29.19068 -27.55649 -25.65638 -24.51860 -23.22116 -22.96275 -21.20757 -19.83877 -19.27808 -18.28826 -17.94982 -17.42329 -16.69770 -16.50424 -16.45183 -15.69578 -15.59508 -15.19229 -14.76577 -14.13153 -13.91254 -13.50183 -13.30589 -13.03483 -12.96633 -12.82961 -12.66417 -12.39444 -12.14560 -11.74870 -11.67419 -11.03004 -10.87561 -10.68962 -10.29934 -10.14435 -8.88567 -8.11855 -6.21606 -0.68052 0.42291 0.47664 1.39110 1.41742 1.42698 1.50511 1.82821 2.42373 2.42723 2.95387 3.17151 3.26379 3.31709 3.42868 3.95439 4.12396 4.19781 4.23920 4.44379 4.54819 4.59816 4.76213 4.79719 4.90668 4.96463 5.12898 5.20752 5.43059 5.46630 5.57589 5.73378 6.27696 6.36053 6.63821 6.74547 6.77379 7.45748 8.96273 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.007883 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.154169 B = 3550.944313 C = 4463.916578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.494 4.494 8 H 0.032 0.968 9 C -0.002 4.002 10 C 0.201 3.799 11 N -0.395 5.395 12 N -0.245 5.245 13 C 0.203 3.797 14 C 0.191 3.809 15 N -0.432 5.432 16 C -0.002 4.002 17 C 0.069 3.931 18 N -0.479 5.479 19 C 0.627 3.373 20 O -0.576 6.576 21 C -0.194 4.194 22 C -0.137 4.137 23 H 0.263 0.737 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.221 0.779 28 H 0.196 0.804 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 -6.680 -10.191 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.160 4.160 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.532 4.532 8 H 0.050 0.950 9 C -0.003 4.003 10 C 0.081 3.919 11 N -0.212 5.212 12 N -0.074 5.074 13 C -0.066 4.066 14 C -0.002 4.002 15 N -0.142 5.142 16 C -0.136 4.136 17 C -0.051 4.051 18 N -0.196 5.196 19 C 0.327 3.673 20 O -0.452 6.452 21 C -0.231 4.231 22 C -0.175 4.175 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.241 0.759 27 H 0.238 0.762 28 H 0.212 0.788 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.777 -6.419 -10.003 13.681 hybrid contribution 0.046 0.042 1.100 1.102 sum 6.823 -6.377 -8.902 12.902 Atomic orbital electron populations 1.70002 1.06628 1.27584 1.49360 1.25437 0.95492 1.01174 0.93860 0.85823 0.78634 0.80366 0.78473 1.19653 1.20623 1.20428 1.20190 0.91767 0.89850 1.51382 0.95014 1.19298 0.99955 0.94404 0.86668 1.21258 0.84097 0.99702 0.86831 1.49196 1.32545 1.10002 1.29475 1.77734 1.12661 1.15063 1.01926 1.23452 0.99012 0.84131 1.00030 1.23535 0.87420 1.01369 0.87850 1.68191 1.15229 1.04339 1.26449 1.22641 1.01984 0.93830 0.95190 1.23200 0.87595 0.98205 0.96079 1.43760 1.29887 1.16127 1.29803 1.16626 0.82337 0.85658 0.82651 1.91026 1.73341 1.31342 1.49535 1.22960 0.97881 0.96223 1.06037 1.22475 0.93500 1.00777 1.00772 0.92737 0.89167 0.90070 0.75910 0.76225 0.78754 0.90237 0.91132 0.91192 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.04 12.96 21.44 0.28 -48.76 16 2 C 0.04 2.25 5.39 84.65 0.46 2.71 16 3 Si 0.94 42.98 29.55 68.60 2.03 45.00 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.49 -26.88 8.61 25.60 0.22 -26.66 16 8 H 0.03 1.82 7.82 -2.91 -0.02 1.80 16 9 C 0.00 -0.10 1.59 -52.93 -0.08 -0.18 16 10 C 0.20 9.16 6.22 86.38 0.54 9.70 16 11 N -0.40 -17.31 3.41 -478.23 -1.63 -18.94 16 12 N -0.25 -9.99 12.61 -54.62 -0.69 -10.68 16 13 C 0.20 6.62 7.92 134.28 1.06 7.69 16 14 C 0.19 4.41 11.37 85.74 0.97 5.39 16 15 N -0.43 -9.03 10.41 -195.01 -2.03 -11.06 16 16 C 0.00 -0.04 11.04 83.51 0.92 0.88 16 17 C 0.07 1.57 11.01 82.90 0.91 2.48 16 18 N -0.48 -15.90 2.95 -482.36 -1.42 -17.32 16 19 C 0.63 26.04 8.73 179.09 1.56 27.60 16 20 O -0.58 -26.01 17.90 -4.93 -0.09 -26.10 16 21 C -0.19 -8.86 9.95 30.62 0.30 -8.56 16 22 C -0.14 -6.31 9.50 30.62 0.29 -6.02 16 23 H 0.26 13.75 8.32 -92.70 -0.77 12.98 16 24 H 0.09 4.34 8.14 -2.39 -0.02 4.32 16 25 H 0.08 3.43 8.08 -2.39 -0.02 3.41 16 26 H 0.22 3.59 8.06 -2.91 -0.02 3.56 16 27 H 0.22 1.85 8.06 -2.91 -0.02 1.82 16 28 H 0.20 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -67.84 291.53 4.75 -63.10 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.14 Total: 9.74 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 7.16 Total: 15.02 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -5.49 Total: -106.76 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.09 Total: -26.10 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -67.84 4.75 -63.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090695037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.105 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds