Wall clock time and date at job start Mon Mar 30 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00389 * 2 1 4 4 H 1.48495 * 109.46864 * 240.00057 * 3 2 1 5 5 H 1.48498 * 109.46917 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47276 * 119.99340 * 3 2 1 7 7 C 1.38957 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99663 * 172.98927 * 7 2 1 9 9 N 1.37096 * 119.99780 * 352.99035 * 7 2 1 10 10 C 1.46496 * 120.00135 * 318.69064 * 9 7 2 11 11 C 1.50696 * 109.47542 * 270.00315 * 10 9 7 12 12 C 1.38227 * 120.00126 * 269.72924 * 11 10 9 13 13 C 1.38238 * 120.00164 * 179.76342 * 12 11 10 14 14 C 1.38241 * 119.99917 * 0.50849 * 13 12 11 15 15 C 1.38231 * 119.99669 * 359.74662 * 14 13 12 16 16 C 1.38234 * 119.99856 * 89.99915 * 11 10 9 17 17 C 1.34777 * 119.99542 * 138.69852 * 9 7 2 18 18 O 1.21296 * 119.99627 * 184.63017 * 17 9 7 19 19 C 1.50695 * 120.00408 * 4.63259 * 17 9 7 20 20 C 1.53509 * 114.17328 * 177.94440 * 19 17 9 21 21 N 1.47471 * 87.93347 * 220.32839 * 20 19 17 22 22 C 1.47473 * 87.83904 * 27.01083 * 21 20 19 23 23 H 0.96998 * 119.99876 * 5.00691 * 1 2 3 24 24 H 1.09005 * 109.46848 * 30.00654 * 10 9 7 25 25 H 1.09005 * 109.47185 * 150.00323 * 10 9 7 26 26 H 1.08006 * 120.00451 * 359.97438 * 12 11 10 27 27 H 1.07995 * 120.00181 * 180.22646 * 13 12 11 28 28 H 1.07993 * 120.00064 * 179.72494 * 14 13 12 29 29 H 1.07999 * 120.00261 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.00429 * 0.02562 * 16 11 10 31 31 H 1.09000 * 113.38220 * 311.02775 * 19 17 9 32 32 H 1.08999 * 113.47562 * 105.55600 * 20 19 17 33 33 H 1.09007 * 113.53190 * 335.10601 * 20 19 17 34 34 H 1.00902 * 111.00144 * 138.70516 * 21 20 19 35 35 H 1.09006 * 113.47952 * 87.75435 * 22 21 20 36 36 H 1.09000 * 113.48022 * 218.22540 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0828 -1.2070 -0.1136 9 7 1.3309 -2.3862 0.1460 10 6 0.2351 -2.4883 1.1128 11 6 0.7812 -2.9284 2.4466 12 6 0.8600 -4.2744 2.7510 13 6 1.3655 -4.6783 3.9726 14 6 1.7824 -3.7358 4.8939 15 6 1.6987 -2.3896 4.5915 16 6 1.1981 -1.9858 3.3678 17 6 1.6729 -3.4550 -0.6005 18 8 1.0206 -4.4754 -0.5332 19 6 2.8656 -3.3824 -1.5187 20 6 3.1631 -4.6891 -2.2673 21 7 4.5966 -4.4353 -2.0317 22 6 4.2070 -3.6728 -0.8309 23 1 -0.4850 0.8368 -0.0733 24 1 -0.2464 -1.5163 1.2201 25 1 -0.4939 -3.2179 0.7600 26 1 0.5299 -5.0108 2.0332 27 1 1.4305 -5.7301 4.2090 28 1 2.1732 -4.0512 5.8500 29 1 2.0240 -1.6531 5.3114 30 1 1.1321 -0.9340 3.1319 31 1 2.8714 -2.4945 -2.1510 32 1 2.8842 -4.6593 -3.3206 33 1 2.7898 -5.5774 -1.7575 34 1 5.0778 -5.2856 -1.7797 35 1 4.1121 -4.2892 0.0631 36 1 4.8128 -2.7817 -0.6669 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091412673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:38 Heat of formation + Delta-G solvation = 28.981937 kcal Electronic energy + Delta-G solvation = -19762.917128 eV Core-core repulsion = 16827.123297 eV Total energy + Delta-G solvation = -2935.793831 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77873 -38.63756 -37.16843 -34.82882 -31.87611 -30.82446 -30.28300 -27.87088 -25.76443 -25.31407 -24.37401 -21.91572 -21.17177 -19.95969 -18.78936 -17.55747 -16.46157 -15.84133 -15.41259 -14.99019 -14.54412 -14.52494 -14.27319 -13.84599 -13.46312 -12.98353 -12.81504 -12.26809 -12.15971 -12.05829 -11.89900 -11.43341 -11.22421 -11.01639 -10.87699 -10.57533 -10.46526 -10.35865 -10.17233 -10.05764 -9.18997 -8.79628 -8.54202 -8.33684 -8.06199 -7.53284 -6.38035 -4.19893 1.94180 1.99288 3.09249 3.17158 3.18288 3.75512 4.04573 4.32659 4.58230 4.85377 4.93321 5.21199 5.41797 5.47594 5.55212 5.59859 5.75066 5.87098 5.91757 6.11056 6.15858 6.17328 6.19865 6.30148 6.36333 6.52160 6.62234 6.70953 6.79907 7.02959 7.07221 7.20801 7.41298 7.51431 7.54248 7.63484 7.93584 8.33484 9.00814 9.42807 9.86178 10.61208 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.010842 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.500033 B = 2581.962050 C = 4043.242235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.044 3.956 3 Si 0.917 3.083 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.328 4.328 8 H 0.088 0.912 9 N -0.429 5.429 10 C 0.133 3.867 11 C -0.075 4.075 12 C -0.109 4.109 13 C -0.133 4.133 14 C -0.136 4.136 15 C -0.132 4.132 16 C -0.096 4.096 17 C 0.485 3.515 18 O -0.602 6.602 19 C -0.113 4.113 20 C 0.018 3.982 21 N -0.632 5.632 22 C 0.022 3.978 23 H 0.272 0.728 24 H 0.130 0.870 25 H 0.061 0.939 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.313 0.687 35 H 0.061 0.939 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 -3.335 4.323 6.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.161 4.161 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.456 4.456 8 H 0.105 0.895 9 N -0.146 5.146 10 C 0.011 3.989 11 C -0.076 4.076 12 C -0.128 4.128 13 C -0.151 4.151 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.114 4.114 17 C 0.274 3.726 18 O -0.488 6.488 19 C -0.135 4.135 20 C -0.112 4.112 21 N -0.256 5.256 22 C -0.109 4.109 23 H 0.083 0.917 24 H 0.147 0.853 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.912 -3.082 3.801 6.265 hybrid contribution 0.216 0.289 0.771 0.851 sum 4.128 -2.793 4.572 6.764 Atomic orbital electron populations 1.69584 1.06051 1.28066 1.47125 1.25450 0.95363 0.99703 0.95558 0.86146 0.79218 0.81065 0.79254 1.19605 1.20806 1.19716 1.19424 0.92035 0.82692 1.51424 0.89466 1.43319 1.30742 1.09535 1.31036 1.20706 0.89958 1.04737 0.83538 1.20678 0.97293 0.92784 0.96863 1.21273 0.99047 0.96169 0.96265 1.21038 1.00714 0.98732 0.94615 1.20956 1.01946 0.93426 0.99105 1.21064 1.01107 0.95618 0.97206 1.21144 0.97482 0.99919 0.92874 1.20170 0.86447 0.84402 0.81623 1.90501 1.55696 1.32496 1.70101 1.22557 0.93441 0.99445 0.98035 1.23468 0.88684 0.97920 1.01160 1.67329 1.11251 1.20094 1.26913 1.23378 0.95496 0.99146 0.92850 0.91709 0.85303 0.92010 0.86048 0.87096 0.87172 0.86954 0.86037 0.86303 0.90196 0.90755 0.87557 0.92035 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.92 10.89 55.50 0.60 -21.31 16 2 C 0.04 1.06 5.25 -17.47 -0.09 0.97 16 3 Si 0.92 18.84 29.56 -169.99 -5.03 13.82 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.33 -7.90 8.46 -14.93 -0.13 -8.03 16 8 H 0.09 2.04 7.12 -52.49 -0.37 1.66 16 9 N -0.43 -10.38 2.50 -116.10 -0.29 -10.67 16 10 C 0.13 3.14 5.15 -5.20 -0.03 3.11 16 11 C -0.07 -1.58 5.46 -104.63 -0.57 -2.15 16 12 C -0.11 -2.14 9.70 -39.59 -0.38 -2.52 16 13 C -0.13 -2.24 10.05 -39.58 -0.40 -2.63 16 14 C -0.14 -2.15 10.05 -39.58 -0.40 -2.55 16 15 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 16 C -0.10 -1.87 9.70 -39.58 -0.38 -2.25 16 17 C 0.49 11.42 7.19 -10.99 -0.08 11.34 16 18 O -0.60 -15.20 15.29 5.54 0.08 -15.11 16 19 C -0.11 -2.26 3.20 -91.24 -0.29 -2.56 16 20 C 0.02 0.32 7.96 -7.56 -0.06 0.26 16 21 N -0.63 -10.13 8.71 -122.69 -1.07 -11.19 16 22 C 0.02 0.39 7.90 -7.56 -0.06 0.33 16 23 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 24 H 0.13 3.21 5.17 -51.93 -0.27 2.94 16 25 H 0.06 1.51 7.31 -51.93 -0.38 1.13 16 26 H 0.12 2.47 7.84 -52.48 -0.41 2.06 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 30 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 31 H 0.12 2.45 7.83 -51.93 -0.41 2.04 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.34 7.48 -51.93 -0.39 0.95 16 34 H 0.31 4.29 8.91 -39.29 -0.35 3.94 16 35 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -27.00 304.98 -9.04 -36.03 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -4.67 Total: 13.13 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -3.27 Total: -9.29 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -0.76 Total: -43.18 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.00 -9.04 -36.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091412673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.016 kcal (2) G-P(sol) polarization free energy of solvation -26.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds