Wall clock time and date at job start Mon Mar 30 2020 05:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00389 * 2 1 4 4 H 1.48495 * 109.46864 * 240.00057 * 3 2 1 5 5 H 1.48498 * 109.46917 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47276 * 119.99340 * 3 2 1 7 7 C 1.38957 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99663 * 172.98927 * 7 2 1 9 9 N 1.37096 * 119.99780 * 352.99035 * 7 2 1 10 10 C 1.46496 * 120.00135 * 318.69064 * 9 7 2 11 11 C 1.50696 * 109.47542 * 270.00315 * 10 9 7 12 12 C 1.38227 * 120.00126 * 269.72924 * 11 10 9 13 13 C 1.38238 * 120.00164 * 179.76342 * 12 11 10 14 14 C 1.38241 * 119.99917 * 0.50849 * 13 12 11 15 15 C 1.38231 * 119.99669 * 359.74662 * 14 13 12 16 16 C 1.38234 * 119.99856 * 89.99915 * 11 10 9 17 17 C 1.34777 * 119.99542 * 138.69852 * 9 7 2 18 18 O 1.21296 * 119.99627 * 184.63017 * 17 9 7 19 19 C 1.50695 * 120.00408 * 4.63259 * 17 9 7 20 20 C 1.53509 * 114.17328 * 177.94440 * 19 17 9 21 21 N 1.47471 * 87.93347 * 220.32839 * 20 19 17 22 22 C 1.47473 * 87.83904 * 27.01083 * 21 20 19 23 23 H 0.96998 * 119.99876 * 5.00691 * 1 2 3 24 24 H 1.09005 * 109.46848 * 30.00654 * 10 9 7 25 25 H 1.09005 * 109.47185 * 150.00323 * 10 9 7 26 26 H 1.08006 * 120.00451 * 359.97438 * 12 11 10 27 27 H 1.07995 * 120.00181 * 180.22646 * 13 12 11 28 28 H 1.07993 * 120.00064 * 179.72494 * 14 13 12 29 29 H 1.07999 * 120.00261 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.00429 * 0.02562 * 16 11 10 31 31 H 1.09000 * 113.38220 * 311.02775 * 19 17 9 32 32 H 1.08999 * 113.47562 * 105.55600 * 20 19 17 33 33 H 1.09007 * 113.53190 * 335.10601 * 20 19 17 34 34 H 1.00902 * 111.00144 * 138.70516 * 21 20 19 35 35 H 1.09006 * 113.47952 * 87.75435 * 22 21 20 36 36 H 1.09000 * 113.48022 * 218.22540 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0828 -1.2070 -0.1136 9 7 1.3309 -2.3862 0.1460 10 6 0.2351 -2.4883 1.1128 11 6 0.7812 -2.9284 2.4466 12 6 0.8600 -4.2744 2.7510 13 6 1.3655 -4.6783 3.9726 14 6 1.7824 -3.7358 4.8939 15 6 1.6987 -2.3896 4.5915 16 6 1.1981 -1.9858 3.3678 17 6 1.6729 -3.4550 -0.6005 18 8 1.0206 -4.4754 -0.5332 19 6 2.8656 -3.3824 -1.5187 20 6 3.1631 -4.6891 -2.2673 21 7 4.5966 -4.4353 -2.0317 22 6 4.2070 -3.6728 -0.8309 23 1 -0.4850 0.8368 -0.0733 24 1 -0.2464 -1.5163 1.2201 25 1 -0.4939 -3.2179 0.7600 26 1 0.5299 -5.0108 2.0332 27 1 1.4305 -5.7301 4.2090 28 1 2.1732 -4.0512 5.8500 29 1 2.0240 -1.6531 5.3114 30 1 1.1321 -0.9340 3.1319 31 1 2.8714 -2.4945 -2.1510 32 1 2.8842 -4.6593 -3.3206 33 1 2.7898 -5.5774 -1.7575 34 1 5.0778 -5.2856 -1.7797 35 1 4.1121 -4.2892 0.0631 36 1 4.8128 -2.7817 -0.6669 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091412673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:37 Heat of formation + Delta-G solvation = 12.285061 kcal Electronic energy + Delta-G solvation = -19763.641159 eV Core-core repulsion = 16827.123297 eV Total energy + Delta-G solvation = -2936.517862 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.40559 -40.09938 -38.80544 -36.68382 -33.66279 -32.46389 -31.69823 -29.40479 -27.50318 -26.76437 -26.11975 -23.34115 -22.69270 -21.58418 -20.50489 -19.18510 -18.11168 -17.39826 -17.00574 -16.68489 -16.25703 -16.00113 -15.80194 -15.48988 -15.08908 -14.43799 -14.21588 -13.86199 -13.79929 -13.55310 -13.40783 -13.15894 -12.92328 -12.76338 -12.50115 -12.16241 -12.11169 -11.89529 -11.74832 -11.53082 -11.02083 -10.45787 -10.05572 -9.75480 -9.56077 -9.41806 -8.22942 -6.11202 0.51073 0.56818 1.44838 1.48802 1.56908 1.96941 2.32587 2.79594 3.05999 3.16997 3.28945 3.66588 4.02485 4.07479 4.16085 4.24239 4.31206 4.36908 4.42058 4.49005 4.67620 4.74782 4.77348 4.81744 4.90762 4.95505 5.14907 5.17904 5.23769 5.33743 5.57118 5.64156 5.66174 5.91626 6.08214 6.21522 6.27752 6.45110 7.12957 7.57423 8.01087 8.76641 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.010842 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.500033 B = 2581.962050 C = 4043.242235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.338 4.338 8 H 0.095 0.905 9 N -0.438 5.438 10 C 0.139 3.861 11 C -0.098 4.098 12 C -0.127 4.127 13 C -0.127 4.127 14 C -0.123 4.123 15 C -0.125 4.125 16 C -0.113 4.113 17 C 0.473 3.527 18 O -0.629 6.629 19 C -0.124 4.124 20 C 0.027 3.973 21 N -0.619 5.619 22 C 0.033 3.967 23 H 0.272 0.728 24 H 0.112 0.888 25 H 0.034 0.966 26 H 0.101 0.899 27 H 0.142 0.858 28 H 0.154 0.846 29 H 0.145 0.855 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.331 0.669 35 H 0.058 0.942 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.420 -3.379 5.902 9.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.197 4.197 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.465 4.465 8 H 0.112 0.888 9 N -0.154 5.154 10 C 0.016 3.984 11 C -0.099 4.099 12 C -0.146 4.146 13 C -0.145 4.145 14 C -0.141 4.141 15 C -0.143 4.143 16 C -0.131 4.131 17 C 0.262 3.738 18 O -0.517 6.517 19 C -0.145 4.145 20 C -0.103 4.103 21 N -0.245 5.245 22 C -0.098 4.098 23 H 0.082 0.918 24 H 0.129 0.871 25 H 0.053 0.947 26 H 0.120 0.880 27 H 0.159 0.841 28 H 0.172 0.828 29 H 0.163 0.837 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.229 -3.137 5.384 8.810 hybrid contribution -0.540 0.242 0.330 0.678 sum 5.689 -2.895 5.714 8.567 Atomic orbital electron populations 1.69729 1.07510 1.28729 1.47985 1.26218 0.95947 1.02588 0.94912 0.85167 0.77942 0.76932 0.79525 1.18983 1.21018 1.18883 1.19682 0.92423 0.82877 1.51564 0.88756 1.43542 1.30606 1.09955 1.31320 1.20490 0.89777 1.02850 0.85283 1.20458 0.99379 0.93976 0.96074 1.21193 1.00659 0.95077 0.97638 1.21375 0.99088 1.00786 0.93229 1.21435 0.99924 0.92508 1.00249 1.21418 0.99455 0.97158 0.96222 1.21113 0.98912 0.98904 0.94209 1.20822 0.87271 0.83877 0.81832 1.90467 1.56857 1.33324 1.71064 1.22578 0.93175 1.00607 0.98159 1.23375 0.89429 0.96147 1.01370 1.67284 1.10253 1.20966 1.25953 1.23278 0.93876 0.99595 0.93044 0.91775 0.87077 0.94731 0.88032 0.84057 0.82796 0.83702 0.87450 0.87022 0.89046 0.91426 0.85521 0.92336 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.95 10.89 21.67 0.24 -46.72 16 2 C 0.01 0.25 5.25 84.93 0.45 0.69 16 3 Si 0.98 38.54 29.56 68.60 2.03 40.57 16 4 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.34 -16.60 8.46 84.04 0.71 -15.89 16 8 H 0.09 4.40 7.12 -2.91 -0.02 4.38 16 9 N -0.44 -22.02 2.50 -639.60 -1.60 -23.62 16 10 C 0.14 6.96 5.15 85.63 0.44 7.40 16 11 C -0.10 -4.25 5.46 -19.87 -0.11 -4.36 16 12 C -0.13 -5.05 9.70 22.27 0.22 -4.84 16 13 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 14 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 15 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 16 C -0.11 -4.40 9.70 22.27 0.22 -4.19 16 17 C 0.47 23.02 7.19 87.66 0.63 23.65 16 18 O -0.63 -33.20 15.29 -3.08 -0.05 -33.25 16 19 C -0.12 -4.96 3.20 -11.20 -0.04 -5.00 16 20 C 0.03 0.93 7.96 83.57 0.67 1.60 16 21 N -0.62 -18.62 8.71 -542.08 -4.72 -23.34 16 22 C 0.03 1.12 7.90 83.57 0.66 1.78 16 23 H 0.27 13.48 8.32 -92.71 -0.77 12.71 16 24 H 0.11 5.92 5.17 -2.38 -0.01 5.91 16 25 H 0.03 1.83 7.31 -2.38 -0.02 1.82 16 26 H 0.10 4.36 7.84 -2.91 -0.02 4.34 16 27 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 28 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.11 4.63 7.83 -2.39 -0.02 4.61 16 32 H 0.09 2.90 8.14 -2.39 -0.02 2.89 16 33 H 0.07 2.41 7.48 -2.38 -0.02 2.40 16 34 H 0.33 8.25 8.91 -89.69 -0.80 7.45 16 35 H 0.06 2.03 8.10 -2.38 -0.02 2.01 16 36 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -60.08 304.98 0.69 -59.38 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 0.29 Total: 36.63 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 4.51 Total: -9.66 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -6.09 Total: -93.68 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.05 Total: -33.25 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -60.08 0.69 -59.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091412673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.668 kcal (2) G-P(sol) polarization free energy of solvation -60.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds