Wall clock time and date at job start Mon Mar 30 2020 04:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21360 * 119.99599 * 2 1 4 4 C 1.46393 * 120.00116 * 180.02562 * 2 1 3 5 5 C 1.40275 * 120.13447 * 359.97438 * 4 2 1 6 6 C 1.36295 * 120.09074 * 179.97438 * 5 4 2 7 7 C 1.39625 * 120.37746 * 359.97438 * 6 5 4 8 8 N 1.38662 * 119.87320 * 180.02562 * 7 6 5 9 9 C 1.36752 * 119.99264 * 359.97438 * 8 7 6 10 10 H 1.07997 * 120.00326 * 339.28724 * 9 8 7 11 11 C 1.38918 * 119.99464 * 159.29050 * 9 8 7 12 12 N 1.31495 * 119.99837 * 341.56850 * 11 9 8 13 13 Si 1.86800 * 119.99705 * 161.56890 * 11 9 8 14 14 H 1.48496 * 109.47201 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47123 * 119.99833 * 13 11 9 16 16 H 1.48499 * 109.46801 * 239.99432 * 13 11 9 17 17 C 1.46499 * 120.00334 * 180.02562 * 8 7 6 18 18 C 1.47200 * 109.46772 * 276.13523 * 17 8 7 19 19 N 7.33470 * 134.39415 * 207.82394 * 2 1 3 20 20 C 1.39129 * 120.26345 * 0.27196 * 7 6 5 21 21 C 1.38279 * 119.90427 * 359.47460 * 20 7 6 22 22 O 1.35624 * 120.18791 * 180.24756 * 21 20 7 23 23 H 1.08997 * 109.47119 * 239.99882 * 1 2 3 24 24 H 1.09003 * 109.47308 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46999 * 119.99788 * 1 2 3 26 26 H 1.07995 * 119.95038 * 359.97438 * 5 4 2 27 27 H 1.08005 * 119.81429 * 179.97438 * 6 5 4 28 28 H 0.97004 * 119.99419 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.47092 * 156.13256 * 17 8 7 30 30 H 1.09000 * 109.46805 * 36.12965 * 17 8 7 31 31 H 1.08009 * 120.05103 * 179.70555 * 20 7 6 32 32 H 0.96703 * 113.99886 * 270.27900 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0510 0.0000 4 6 2.2390 -1.2678 -0.0006 5 6 1.5405 -2.4843 -0.0006 6 6 2.2229 -3.6641 -0.0016 7 6 3.6191 -3.6722 -0.0032 8 7 4.3028 -4.8785 -0.0048 9 6 3.6094 -6.0572 -0.0043 10 1 2.5821 -6.0793 0.3281 11 6 4.2266 -7.2263 -0.4312 12 7 5.3180 -7.1644 -1.1621 13 14 3.5061 -8.8860 0.0329 14 1 2.2855 -8.6836 0.8540 15 1 3.1551 -9.6355 -1.2001 16 1 4.5052 -9.6584 0.8140 17 6 5.7677 -4.8904 -0.0060 18 6 6.2584 -4.7448 -1.3861 19 7 6.6383 -4.6350 -2.4463 20 6 4.3273 -2.4746 0.0019 21 6 3.6464 -1.2711 -0.0023 22 8 4.3310 -0.1003 -0.0024 23 1 -0.3633 -0.5138 0.8899 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 0.4606 -2.4859 0.0003 27 1 1.6806 -4.5981 -0.0012 28 1 5.7488 -7.9807 -1.4605 29 1 6.1238 -5.8334 0.4087 30 1 6.1382 -4.0638 0.6004 31 1 5.4073 -2.4849 0.0054 32 1 4.5305 0.2387 0.8810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093668929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:05 Heat of formation + Delta-G solvation = -28.462756 kcal Electronic energy + Delta-G solvation = -18813.315396 eV Core-core repulsion = 15739.197482 eV Total energy + Delta-G solvation = -3074.117914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.09903 -39.73665 -38.46808 -37.24572 -36.32526 -34.08347 -31.86657 -31.03684 -29.66577 -28.84690 -26.27540 -23.24059 -23.12309 -20.61278 -19.89411 -19.26842 -18.13578 -17.69553 -17.07065 -16.73764 -16.19292 -15.80265 -15.64554 -15.35077 -14.88174 -14.82532 -14.40032 -14.30135 -13.85757 -13.38050 -13.20245 -13.15615 -12.91281 -12.89977 -12.79982 -12.59139 -12.25787 -12.13152 -11.86086 -11.55038 -11.30855 -10.51208 -10.26083 -9.57340 -8.66788 -8.40385 -5.84796 0.09682 0.73607 1.45384 1.51513 1.63035 1.76805 1.91928 2.22600 2.32584 2.84650 3.05239 3.16256 3.53210 3.55109 3.61011 4.13125 4.38872 4.49773 4.56750 4.70456 4.75765 4.81851 4.85173 4.98410 5.11232 5.25289 5.35431 5.59250 5.68018 5.75324 5.87856 6.15401 6.55429 6.96033 6.97118 7.00747 7.20541 7.46406 8.56382 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.006115 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.675876 B = 4577.847937 C = 5431.424548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.393 3.607 3 O -0.523 6.523 4 C -0.333 4.333 5 C 0.007 3.993 6 C -0.233 4.233 7 C 0.231 3.769 8 N -0.434 5.434 9 C -0.328 4.328 10 H 0.119 0.881 11 C -0.005 4.005 12 N -0.896 5.896 13 Si 0.994 3.006 14 H -0.252 1.252 15 H -0.294 1.294 16 H -0.276 1.276 17 C 0.226 3.774 18 C 0.259 3.741 19 N -0.512 5.512 20 C -0.290 4.290 21 C 0.207 3.793 22 O -0.503 6.503 23 H 0.113 0.887 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.160 0.840 27 H 0.131 0.869 28 H 0.274 0.726 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 3.173 8.353 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.278 3.722 3 O -0.405 6.405 4 C -0.338 4.338 5 C -0.013 4.013 6 C -0.255 4.255 7 C 0.112 3.888 8 N -0.120 5.120 9 C -0.455 4.455 10 H 0.137 0.863 11 C -0.208 4.208 12 N -0.532 5.532 13 Si 0.818 3.182 14 H -0.175 1.175 15 H -0.220 1.220 16 H -0.201 1.201 17 C 0.099 3.901 18 C -0.059 4.059 19 N -0.192 5.192 20 C -0.314 4.314 21 C 0.160 3.840 22 O -0.315 6.315 23 H 0.131 0.869 24 H 0.097 0.903 25 H 0.123 0.877 26 H 0.177 0.823 27 H 0.149 0.851 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.080 3.362 6.104 9.248 hybrid contribution 0.221 -1.098 0.512 1.232 sum -5.859 2.264 6.616 9.122 Atomic orbital electron populations 1.22201 0.91490 1.04961 1.05941 1.22529 0.92883 0.86832 0.69922 1.90486 1.73313 1.35423 1.41323 1.20439 0.92980 0.95887 1.24469 1.20916 1.00381 0.89412 0.90577 1.20474 0.91752 0.99373 1.13944 1.18254 0.92539 0.85250 0.92786 1.42660 1.03053 1.03250 1.63006 1.20118 0.99756 0.83503 1.42168 0.86346 1.26126 0.96985 1.03314 0.94325 1.69973 1.21284 1.30464 1.31434 0.84823 0.78910 0.76793 0.77636 1.17547 1.22034 1.20147 1.18982 0.81186 1.05456 0.84430 1.29617 0.91580 0.88827 0.95847 1.80690 1.11092 1.14000 1.13430 1.20623 0.99569 0.90860 1.20364 1.18488 0.89381 0.84381 0.91741 1.84619 1.75846 1.36686 1.34382 0.86889 0.90283 0.87731 0.82284 0.85084 0.91606 0.85647 0.85972 0.86207 0.73827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.78 8.91 71.24 0.63 -3.15 16 2 C 0.39 12.32 7.20 27.81 0.20 12.52 16 3 O -0.52 -20.11 15.88 17.72 0.28 -19.83 16 4 C -0.33 -11.18 5.88 -20.05 -0.12 -11.30 16 5 C 0.01 0.20 9.40 22.31 0.21 0.41 16 6 C -0.23 -8.09 9.19 22.15 0.20 -7.89 16 7 C 0.23 8.97 6.47 38.61 0.25 9.22 16 8 N -0.43 -17.77 2.68 -521.71 -1.40 -19.17 16 9 C -0.33 -13.94 9.05 84.09 0.76 -13.17 16 10 H 0.12 4.72 6.08 -2.91 -0.02 4.70 16 11 C 0.00 -0.21 4.91 84.91 0.42 0.21 16 12 N -0.90 -42.11 9.41 21.66 0.20 -41.91 16 13 Si 0.99 34.96 29.59 68.60 2.03 36.99 16 14 H -0.25 -8.25 7.11 99.48 0.71 -7.55 16 15 H -0.29 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.28 -9.61 7.11 99.48 0.71 -8.90 16 17 C 0.23 8.58 4.80 84.57 0.41 8.98 16 18 C 0.26 11.56 13.20 89.49 1.18 12.74 16 19 N -0.51 -25.21 18.51 19.95 0.37 -24.84 16 20 C -0.29 -10.94 9.01 22.49 0.20 -10.74 16 21 C 0.21 7.67 6.72 22.89 0.15 7.82 16 22 O -0.50 -18.10 11.57 -68.37 -0.79 -18.90 16 23 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16 24 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 25 H 0.10 1.74 8.08 -2.39 -0.02 1.72 16 26 H 0.16 3.30 7.02 -2.91 -0.02 3.28 16 27 H 0.13 4.39 6.09 -2.91 -0.02 4.37 16 28 H 0.27 12.63 8.31 -92.71 -0.77 11.86 16 29 H 0.13 4.78 6.56 -2.39 -0.02 4.77 16 30 H 0.12 3.70 6.50 -2.39 -0.02 3.69 16 31 H 0.12 4.34 6.10 -2.91 -0.02 4.33 16 32 H 0.40 10.80 9.06 -74.05 -0.67 10.13 16 Total: -1.00 -62.37 283.72 5.71 -56.66 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.52 Total: 25.33 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.50 Total: 5.66 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -0.83 Total: -85.92 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.51 Total: -38.72 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Total: -62.37 5.71 -56.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093668929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.198 kcal (2) G-P(sol) polarization free energy of solvation -62.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds