Wall clock time and date at job start Mon Mar 30 2020 05:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47048 * 269.99995 * 3 2 1 5 5 H 1.48500 * 109.46679 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47086 * 150.00057 * 3 2 1 7 7 C 1.37875 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47107 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47121 * 179.97438 * 10 9 7 12 12 C 1.40032 * 111.00273 * 290.12353 * 11 10 9 13 13 C 1.39403 * 129.95200 * 76.14533 * 12 11 10 14 14 C 1.37910 * 120.19814 * 180.71934 * 13 12 11 15 15 C 1.38306 * 120.26536 * 0.02562 * 14 13 12 16 16 C 1.38306 * 119.88191 * 359.86654 * 15 14 13 17 17 C 1.37919 * 120.07972 * 0.02562 * 16 15 14 18 18 C 1.51573 * 131.55664 * 180.27018 * 17 16 15 19 19 C 1.48406 * 111.00494 * 170.10483 * 11 10 9 20 20 H 1.09001 * 110.93776 * 336.30266 * 19 11 10 21 21 C 1.50693 * 110.83504 * 212.72170 * 19 11 10 22 22 N 1.34783 * 120.00266 * 185.58536 * 21 19 11 23 23 O 1.21280 * 120.00242 * 5.58385 * 21 19 11 24 24 H 0.97003 * 120.00202 * 0.02562 * 1 2 3 25 25 H 1.08989 * 109.47861 * 59.99746 * 9 7 2 26 26 H 1.09000 * 109.46879 * 299.99512 * 9 7 2 27 27 H 1.09005 * 109.47147 * 59.99416 * 10 9 7 28 28 H 1.09000 * 109.47396 * 299.99465 * 10 9 7 29 29 H 1.07998 * 119.90465 * 0.71776 * 13 12 11 30 30 H 1.07996 * 119.87079 * 180.02562 * 14 13 12 31 31 H 1.08000 * 120.06215 * 179.89557 * 15 14 13 32 32 H 1.08005 * 119.96282 * 179.97438 * 16 15 14 33 33 H 1.09002 * 110.73983 * 282.35246 * 18 17 16 34 34 H 1.08995 * 110.74408 * 45.50181 * 18 17 16 35 35 H 0.97001 * 119.99552 * 0.02562 * 22 21 19 36 36 H 0.96993 * 120.00063 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5106 -4.9342 -0.0033 12 6 0.8706 -5.1447 1.2243 13 6 -0.2902 -4.5693 1.7389 14 6 -0.7389 -4.9179 2.9955 15 6 -0.0408 -5.8398 3.7541 16 6 1.1105 -6.4168 3.2497 17 6 1.5623 -6.0733 1.9927 18 6 2.7647 -6.5372 1.1949 19 6 2.4265 -6.0772 -0.2423 20 1 3.3261 -5.7527 -0.7654 21 6 1.7284 -7.1729 -1.0058 22 7 2.3548 -8.3459 -1.2256 23 8 0.6027 -6.9994 -1.4224 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8918 26 1 0.6240 -2.5574 0.8881 27 1 2.8719 -3.6051 0.8873 28 1 2.8718 -3.6036 -0.8927 29 1 -0.8397 -3.8485 1.1518 30 1 -1.6391 -4.4691 3.3888 31 1 -0.3943 -6.1091 4.7385 32 1 1.6569 -7.1365 3.8412 33 1 3.6744 -6.0545 1.5519 34 1 2.8621 -7.6219 1.2391 35 1 3.2550 -8.4849 -0.8920 36 1 1.9053 -9.0513 -1.7166 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101547767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:19 Heat of formation + Delta-G solvation = 1.535091 kcal Electronic energy + Delta-G solvation = -19417.065224 eV Core-core repulsion = 16480.081209 eV Total energy + Delta-G solvation = -2936.984016 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89245 -38.64829 -36.30268 -33.89326 -33.35207 -31.95336 -29.99530 -29.10351 -28.02983 -24.78961 -23.85415 -21.76223 -21.13202 -20.15784 -19.98253 -17.57430 -16.62600 -16.36510 -15.93415 -15.33075 -15.26240 -14.72752 -14.42037 -13.96439 -13.75672 -13.39536 -12.99262 -12.84503 -12.52902 -12.10147 -11.87193 -11.62600 -11.43760 -11.16494 -10.91152 -10.66079 -10.51501 -10.10661 -9.79847 -9.63040 -9.43685 -9.12784 -8.85010 -8.45211 -8.29510 -7.41820 -5.98712 -4.01396 1.68677 1.80939 2.78174 3.32677 3.36271 3.39333 3.42279 4.01591 4.15072 4.47386 4.67715 4.84354 4.93727 5.19581 5.35312 5.37536 5.38902 5.49853 5.66461 5.79471 5.92921 6.06105 6.19194 6.24897 6.38879 6.70982 6.77061 6.82121 6.88031 6.91951 7.14446 7.25685 7.44161 7.69151 7.73910 7.88850 8.06685 8.39735 8.41674 9.04710 9.61739 11.12679 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.006202 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.026326 B = 4513.847270 C = 5273.508949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.023 3.977 10 C 0.067 3.933 11 N -0.473 5.473 12 C 0.124 3.876 13 C -0.096 4.096 14 C -0.103 4.103 15 C -0.145 4.145 16 C -0.093 4.093 17 C -0.160 4.160 18 C -0.094 4.094 19 C 0.054 3.946 20 H 0.117 0.883 21 C 0.526 3.474 22 N -0.862 5.862 23 O -0.510 6.510 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.103 -16.365 4.202 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.056 4.056 11 N -0.189 5.189 12 C 0.027 3.973 13 C -0.116 4.116 14 C -0.121 4.121 15 C -0.163 4.163 16 C -0.111 4.111 17 C -0.163 4.163 18 C -0.132 4.132 19 C -0.057 4.057 20 H 0.135 0.865 21 C 0.309 3.691 22 N -0.428 5.428 23 O -0.383 6.383 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.226 0.774 36 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.859 -15.840 3.526 16.940 hybrid contribution 1.319 0.540 0.483 1.505 sum 6.178 -15.300 4.009 16.981 Atomic orbital electron populations 1.69969 1.05996 1.26608 1.50372 1.24971 0.94826 0.99116 0.95254 0.86595 0.79787 0.83522 0.78090 1.20646 1.21201 1.19952 1.21115 0.92886 0.90871 1.51243 0.92805 1.19218 0.94059 0.89664 0.98519 1.22540 0.96781 0.86765 0.99546 1.59920 1.27067 1.02350 1.29608 1.19446 0.94224 0.95272 0.88372 1.20774 0.94763 1.00106 0.95925 1.20938 0.99799 0.97367 0.94008 1.20913 0.96462 0.99060 0.99906 1.20192 0.96740 1.00168 0.94035 1.20844 0.97233 1.02702 0.95505 1.21579 0.97164 1.01612 0.92845 1.22611 0.95651 0.91686 0.95791 0.86512 1.20354 0.86405 0.82868 0.79497 1.43827 1.20474 1.16977 1.61502 1.90763 1.18257 1.80080 1.49165 0.92952 0.95523 0.95447 0.95140 0.91329 0.84798 0.85843 0.86314 0.86860 0.89199 0.89945 0.77448 0.76968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.60 4.83 -27.88 -0.13 0.47 16 10 C 0.07 1.44 4.70 -3.82 -0.02 1.42 16 11 N -0.47 -9.35 4.30 -162.46 -0.70 -10.05 16 12 C 0.12 2.41 5.24 -83.41 -0.44 1.98 16 13 C -0.10 -1.90 8.53 -39.27 -0.34 -2.24 16 14 C -0.10 -1.69 10.02 -39.68 -0.40 -2.09 16 15 C -0.14 -2.10 10.06 -39.53 -0.40 -2.50 16 16 C -0.09 -1.34 10.03 -39.67 -0.40 -1.74 16 17 C -0.16 -2.59 6.22 -104.04 -0.65 -3.24 16 18 C -0.09 -1.18 6.47 -26.59 -0.17 -1.35 16 19 C 0.05 0.81 3.13 -67.17 -0.21 0.60 16 20 H 0.12 1.44 7.62 -51.93 -0.40 1.05 16 21 C 0.53 7.90 7.43 -10.99 -0.08 7.82 16 22 N -0.86 -7.93 8.60 31.22 0.27 -7.66 16 23 O -0.51 -10.43 17.36 5.56 0.10 -10.34 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.77 8.14 -51.94 -0.42 0.35 16 26 H 0.03 0.76 5.55 -51.93 -0.29 0.47 16 27 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 28 H 0.07 1.39 7.86 -51.93 -0.41 0.98 16 29 H 0.13 2.90 7.16 -52.49 -0.38 2.53 16 30 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.80 7.51 -51.93 -0.39 0.41 16 35 H 0.40 2.24 8.63 -40.82 -0.35 1.89 16 36 H 0.40 3.22 8.93 -40.82 -0.36 2.86 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -35.33 303.46 -8.33 -43.66 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.65 Total: 3.69 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.64 Total: -14.37 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.31 Total: -43.90 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.10 Total: -10.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.33 -8.33 -43.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101547767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.196 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds