Wall clock time and date at job start Mon Mar 30 2020 05:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47048 * 269.99995 * 3 2 1 5 5 H 1.48500 * 109.46679 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47086 * 150.00057 * 3 2 1 7 7 C 1.37875 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47107 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47121 * 179.97438 * 10 9 7 12 12 C 1.40032 * 111.00273 * 290.12353 * 11 10 9 13 13 C 1.39403 * 129.95200 * 76.14533 * 12 11 10 14 14 C 1.37910 * 120.19814 * 180.71934 * 13 12 11 15 15 C 1.38306 * 120.26536 * 0.02562 * 14 13 12 16 16 C 1.38306 * 119.88191 * 359.86654 * 15 14 13 17 17 C 1.37919 * 120.07972 * 0.02562 * 16 15 14 18 18 C 1.51573 * 131.55664 * 180.27018 * 17 16 15 19 19 C 1.48406 * 111.00494 * 170.10483 * 11 10 9 20 20 H 1.09001 * 110.93776 * 336.30266 * 19 11 10 21 21 C 1.50693 * 110.83504 * 212.72170 * 19 11 10 22 22 N 1.34783 * 120.00266 * 185.58536 * 21 19 11 23 23 O 1.21280 * 120.00242 * 5.58385 * 21 19 11 24 24 H 0.97003 * 120.00202 * 0.02562 * 1 2 3 25 25 H 1.08989 * 109.47861 * 59.99746 * 9 7 2 26 26 H 1.09000 * 109.46879 * 299.99512 * 9 7 2 27 27 H 1.09005 * 109.47147 * 59.99416 * 10 9 7 28 28 H 1.09000 * 109.47396 * 299.99465 * 10 9 7 29 29 H 1.07998 * 119.90465 * 0.71776 * 13 12 11 30 30 H 1.07996 * 119.87079 * 180.02562 * 14 13 12 31 31 H 1.08000 * 120.06215 * 179.89557 * 15 14 13 32 32 H 1.08005 * 119.96282 * 179.97438 * 16 15 14 33 33 H 1.09002 * 110.73983 * 282.35246 * 18 17 16 34 34 H 1.08995 * 110.74408 * 45.50181 * 18 17 16 35 35 H 0.97001 * 119.99552 * 0.02562 * 22 21 19 36 36 H 0.96993 * 120.00063 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5106 -4.9342 -0.0033 12 6 0.8706 -5.1447 1.2243 13 6 -0.2902 -4.5693 1.7389 14 6 -0.7389 -4.9179 2.9955 15 6 -0.0408 -5.8398 3.7541 16 6 1.1105 -6.4168 3.2497 17 6 1.5623 -6.0733 1.9927 18 6 2.7647 -6.5372 1.1949 19 6 2.4265 -6.0772 -0.2423 20 1 3.3261 -5.7527 -0.7654 21 6 1.7284 -7.1729 -1.0058 22 7 2.3548 -8.3459 -1.2256 23 8 0.6027 -6.9994 -1.4224 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8918 26 1 0.6240 -2.5574 0.8881 27 1 2.8719 -3.6051 0.8873 28 1 2.8718 -3.6036 -0.8927 29 1 -0.8397 -3.8485 1.1518 30 1 -1.6391 -4.4691 3.3888 31 1 -0.3943 -6.1091 4.7385 32 1 1.6569 -7.1365 3.8412 33 1 3.6744 -6.0545 1.5519 34 1 2.8621 -7.6219 1.2391 35 1 3.2550 -8.4849 -0.8920 36 1 1.9053 -9.0513 -1.7166 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101547767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:19 Heat of formation + Delta-G solvation = -25.429777 kcal Electronic energy + Delta-G solvation = -19418.234509 eV Core-core repulsion = 16480.081209 eV Total energy + Delta-G solvation = -2938.153300 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.14570 -39.86315 -37.63610 -35.59947 -34.71469 -33.52309 -31.57930 -30.35837 -29.53902 -26.54246 -25.20270 -23.39394 -22.39259 -21.65773 -21.17172 -18.67399 -18.44565 -17.71632 -17.29912 -16.61526 -16.50994 -16.43387 -15.90306 -15.42996 -15.06245 -14.89779 -14.28262 -14.14088 -14.05785 -13.70385 -13.43687 -13.04142 -12.89970 -12.74523 -12.50317 -12.45374 -12.04296 -11.87226 -11.48436 -11.27062 -10.92062 -10.62244 -10.57350 -10.23680 -9.67044 -8.76393 -8.20219 -6.32649 0.43215 0.51721 1.39000 1.41602 1.52279 1.65011 2.26682 2.42843 2.79333 2.93244 3.13317 3.56877 3.75383 3.97252 4.10937 4.19807 4.24735 4.36044 4.45177 4.56505 4.60533 4.71304 4.83487 4.86469 5.01431 5.15055 5.39930 5.48573 5.54992 5.61724 5.63585 5.78094 5.89750 5.95457 6.05327 6.20983 6.39579 6.56201 6.84239 7.36356 7.43309 8.92336 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.006202 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.026326 B = 4513.847270 C = 5273.508949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.030 3.970 10 C 0.087 3.913 11 N -0.504 5.504 12 C 0.086 3.914 13 C -0.138 4.138 14 C -0.114 4.114 15 C -0.136 4.136 16 C -0.088 4.088 17 C -0.162 4.162 18 C -0.081 4.081 19 C 0.049 3.951 20 H 0.144 0.856 21 C 0.525 3.475 22 N -0.829 5.829 23 O -0.579 6.579 24 H 0.263 0.737 25 H -0.020 1.020 26 H 0.003 0.997 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.420 0.580 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 -18.325 5.919 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.007 4.007 10 C -0.037 4.037 11 N -0.221 5.221 12 C -0.011 4.011 13 C -0.158 4.158 14 C -0.132 4.132 15 C -0.154 4.154 16 C -0.106 4.106 17 C -0.164 4.164 18 C -0.118 4.118 19 C -0.062 4.062 20 H 0.161 0.839 21 C 0.308 3.692 22 N -0.395 5.395 23 O -0.457 6.457 24 H 0.071 0.929 25 H -0.002 1.002 26 H 0.021 0.979 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.252 0.748 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.252 -17.868 5.252 20.370 hybrid contribution 0.233 1.053 -0.033 1.079 sum 8.485 -16.815 5.219 19.544 Atomic orbital electron populations 1.70146 1.08067 1.27737 1.51398 1.26025 0.95722 1.03548 0.94573 0.85376 0.78683 0.78030 0.78507 1.19759 1.20882 1.18248 1.21580 0.93621 0.91844 1.50982 0.91574 1.19018 0.94392 0.92162 0.95123 1.22111 0.95149 0.86371 1.00114 1.59680 1.28511 1.03103 1.30823 1.19655 0.94835 0.97235 0.89344 1.20737 0.96218 1.01216 0.97599 1.21157 1.00730 0.98323 0.93032 1.21384 0.95922 0.97209 1.00905 1.20739 0.96404 0.99936 0.93523 1.21342 0.97939 1.01211 0.95936 1.21661 0.96183 1.04036 0.89951 1.22822 0.95356 0.90082 0.97900 0.83887 1.20511 0.85603 0.84141 0.78902 1.43504 1.21097 1.15093 1.59825 1.90749 1.21239 1.81504 1.52165 0.92851 1.00191 0.97886 0.94484 0.90358 0.89524 0.84712 0.82415 0.82411 0.86842 0.86081 0.74773 0.75873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.33 13.29 21.45 0.28 -59.05 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.73 4.83 29.85 0.14 1.88 16 10 C 0.09 3.83 4.70 86.30 0.41 4.23 16 11 N -0.50 -20.56 4.30 -667.90 -2.87 -23.43 16 12 C 0.09 3.46 5.24 38.29 0.20 3.66 16 13 C -0.14 -5.96 8.53 22.47 0.19 -5.77 16 14 C -0.11 -3.89 10.02 22.21 0.22 -3.66 16 15 C -0.14 -3.62 10.06 22.30 0.22 -3.39 16 16 C -0.09 -2.22 10.03 22.21 0.22 -1.99 16 17 C -0.16 -4.88 6.22 -19.49 -0.12 -5.00 16 18 C -0.08 -1.70 6.47 30.69 0.20 -1.50 16 19 C 0.05 1.37 3.13 44.44 0.14 1.51 16 20 H 0.14 3.12 7.62 -2.39 -0.02 3.10 16 21 C 0.52 15.11 7.43 87.65 0.65 15.76 16 22 N -0.83 -12.63 8.60 -173.53 -1.49 -14.12 16 23 O -0.58 -24.36 17.36 -3.03 -0.05 -24.42 16 24 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 25 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 26 H 0.00 0.17 5.55 -2.39 -0.01 0.16 16 27 H 0.04 1.55 8.06 -2.38 -0.02 1.53 16 28 H 0.08 3.20 7.86 -2.39 -0.02 3.18 16 29 H 0.09 4.39 7.16 -2.91 -0.02 4.37 16 30 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.12 1.62 7.51 -2.39 -0.02 1.60 16 35 H 0.42 2.76 8.63 -92.71 -0.80 1.96 16 36 H 0.41 5.46 8.93 -92.71 -0.83 4.64 16 Total: -1.00 -85.02 303.46 0.55 -84.47 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -0.52 Total: 14.76 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 3.17 Total: -25.39 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -4.08 Total: -96.60 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -85.02 0.55 -84.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101547767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.042 kcal (2) G-P(sol) polarization free energy of solvation -85.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds