Wall clock time and date at job start Mon Mar 30 2020 04:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38477 * 120.10572 * 2 1 4 4 O 1.35906 * 119.98178 * 0.02839 * 3 2 1 5 5 C 1.38828 * 120.03199 * 180.02562 * 3 2 1 6 6 C 1.38302 * 120.25533 * 359.97436 * 5 3 2 7 7 C 1.37950 * 120.21269 * 359.72968 * 6 5 3 8 8 C 1.39554 * 120.10371 * 180.02562 * 2 1 3 9 9 C 1.47740 * 120.12437 * 359.97438 * 8 2 1 10 10 O 1.21590 * 119.99917 * 303.66420 * 9 8 2 11 11 N 1.34779 * 119.99800 * 123.38961 * 9 8 2 12 12 C 1.36876 * 119.99685 * 184.94732 * 11 9 8 13 13 H 1.07999 * 119.99581 * 14.34217 * 12 11 9 14 14 C 1.39044 * 119.99744 * 194.33686 * 12 11 9 15 15 N 1.31359 * 120.00014 * 12.07719 * 14 12 11 16 16 Si 1.86803 * 119.99799 * 192.07419 * 14 12 11 17 17 H 1.48503 * 109.47105 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46978 * 119.99949 * 16 14 12 19 19 H 1.48502 * 109.47009 * 240.00029 * 16 14 12 20 20 C 1.46496 * 120.00088 * 4.94814 * 11 9 8 21 21 C 1.47208 * 109.46752 * 89.47561 * 20 11 9 22 22 N 5.52874 * 129.19429 * 195.14344 * 2 1 3 23 23 H 1.09001 * 109.46988 * 274.49438 * 1 2 3 24 24 H 1.09005 * 109.47047 * 34.48702 * 1 2 3 25 25 H 1.08996 * 109.47614 * 154.49226 * 1 2 3 26 26 H 0.96698 * 114.00238 * 90.00052 * 4 3 2 27 27 H 1.08003 * 119.87179 * 180.02562 * 5 3 2 28 28 H 1.07997 * 119.89746 * 180.02562 * 6 5 3 29 29 H 1.07992 * 120.02494 * 180.29437 * 7 6 5 30 30 H 0.97001 * 119.99891 * 180.02562 * 15 14 12 31 31 H 1.08997 * 109.47122 * 209.47571 * 20 11 9 32 32 H 1.08997 * 109.47427 * 329.47862 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 8 1.5239 2.3760 0.0006 5 6 3.5899 1.1962 -0.0005 6 6 4.2852 0.0006 -0.0005 7 6 3.6037 -1.1987 0.0056 8 6 2.2070 -1.2073 -0.0005 9 6 1.4734 -2.4897 -0.0005 10 8 0.6652 -2.7278 0.8761 11 7 1.6960 -3.3934 -0.9754 12 6 0.9452 -4.5363 -1.0335 13 1 0.0352 -4.6145 -0.4570 14 6 1.3539 -5.5967 -1.8347 15 7 2.5638 -5.6050 -2.3463 16 14 0.1826 -7.0094 -2.1834 17 1 -1.1101 -6.7619 -1.4957 18 1 -0.0475 -7.1118 -3.6469 19 1 0.7741 -8.2773 -1.6854 20 6 2.7415 -3.1523 -1.9729 21 6 4.0168 -3.7076 -1.4909 22 7 5.0009 -4.1360 -1.1193 23 1 -0.3633 0.0805 1.0245 24 1 -0.3633 0.8471 -0.5819 25 1 -0.3634 -0.9274 -0.4425 26 1 1.3281 2.7167 0.8841 27 1 4.1290 2.1320 -0.0001 28 1 5.3652 0.0060 -0.0005 29 1 4.1497 -2.1305 0.0104 30 1 2.8488 -6.3445 -2.9055 31 1 2.4668 -3.6344 -2.9110 32 1 2.8500 -2.0797 -2.1336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125667298.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:46 Heat of formation + Delta-G solvation = -7.189192 kcal Electronic energy + Delta-G solvation = -19316.473750 eV Core-core repulsion = 16243.278327 eV Total energy + Delta-G solvation = -3073.195423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.08621 -38.48885 -36.24457 -35.90018 -34.36863 -32.31550 -31.95070 -29.82339 -27.48268 -26.72221 -25.12149 -22.88663 -21.43934 -19.65377 -18.12062 -17.94264 -16.35322 -16.32379 -15.78281 -15.66227 -14.90596 -14.49161 -14.26179 -13.52951 -13.27099 -13.10834 -12.90132 -12.77244 -12.19925 -11.95897 -11.84999 -11.59564 -11.52375 -11.28833 -11.24981 -11.04976 -10.50955 -10.46778 -10.44481 -10.37280 -9.36404 -8.81365 -8.42733 -8.35389 -8.17940 -6.56010 -4.09337 1.30731 1.46842 3.03773 3.17624 3.23583 3.41166 3.67598 3.90186 4.01527 4.07197 4.32769 4.73954 4.85720 5.05719 5.13875 5.19709 5.38672 5.51682 5.64150 5.92064 5.96105 6.03446 6.06448 6.14900 6.49626 6.52691 6.60301 6.65456 6.77918 6.94074 7.37025 7.74170 7.78665 8.19765 8.73766 8.89604 9.09082 9.62749 10.46710 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.007073 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.241542 B = 3957.925020 C = 4707.181185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 C 0.093 3.907 4 O -0.496 6.496 5 C -0.137 4.137 6 C -0.113 4.113 7 C -0.106 4.106 8 C -0.084 4.084 9 C 0.490 3.510 10 O -0.566 6.566 11 N -0.432 5.432 12 C -0.305 4.305 13 H 0.112 0.888 14 C 0.029 3.971 15 N -0.885 5.885 16 Si 0.937 3.063 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.281 1.281 20 C 0.217 3.783 21 C 0.258 3.742 22 N -0.480 5.480 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.385 0.615 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.275 0.725 31 H 0.138 0.862 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 11.679 -0.104 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.072 4.072 3 C 0.048 3.952 4 O -0.305 6.305 5 C -0.155 4.155 6 C -0.131 4.131 7 C -0.125 4.125 8 C -0.088 4.088 9 C 0.278 3.722 10 O -0.449 6.449 11 N -0.151 5.151 12 C -0.432 4.432 13 H 0.130 0.870 14 C -0.173 4.173 15 N -0.525 5.525 16 Si 0.763 3.237 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.207 1.207 20 C 0.090 3.910 21 C -0.060 4.060 22 N -0.161 5.161 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.240 0.760 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.825 10.694 0.125 10.727 hybrid contribution -0.587 -0.677 0.098 0.901 sum 0.238 10.017 0.223 10.023 Atomic orbital electron populations 1.20684 0.90156 1.03196 1.02513 1.20234 0.97032 0.91077 0.98851 1.18109 0.89664 0.84566 1.02818 1.84795 1.76661 1.35844 1.33209 1.21396 0.93279 0.98633 1.02234 1.20894 0.99876 0.91582 1.00796 1.21575 0.93276 0.98931 0.98670 1.20054 0.93549 0.94033 1.01130 1.17892 0.86447 0.84567 0.83254 1.90652 1.38246 1.79260 1.36739 1.43575 1.29884 1.18544 1.23122 1.19892 1.05219 0.91112 1.26961 0.86999 1.25354 0.96341 0.98778 0.96852 1.69704 1.16039 1.33051 1.33724 0.85681 0.79951 0.79828 0.78245 1.19030 1.20343 1.20712 1.18966 0.79439 0.97465 0.95177 1.29113 0.93527 0.90897 0.92414 1.80907 1.14332 1.11430 1.09429 0.91037 0.91438 0.90564 0.75980 0.85612 0.85559 0.85411 0.91366 0.84492 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.02 36.01 0.32 -1.42 16 2 C -0.07 -1.19 5.93 -104.04 -0.62 -1.81 16 3 C 0.09 1.34 6.67 -39.28 -0.26 1.08 16 4 O -0.50 -5.99 12.62 -19.44 -0.25 -6.23 16 5 C -0.14 -1.82 9.98 -39.34 -0.39 -2.21 16 6 C -0.11 -1.63 10.03 -39.66 -0.40 -2.03 16 7 C -0.11 -1.86 7.80 -39.15 -0.31 -2.17 16 8 C -0.08 -1.62 4.60 -104.99 -0.48 -2.11 16 9 C 0.49 11.38 5.94 -12.38 -0.07 11.31 16 10 O -0.57 -14.82 15.78 5.29 0.08 -14.74 16 11 N -0.43 -10.23 2.58 -119.05 -0.31 -10.54 16 12 C -0.30 -7.77 9.42 -15.00 -0.14 -7.91 16 13 H 0.11 2.98 7.31 -52.49 -0.38 2.59 16 14 C 0.03 0.71 5.15 -17.46 -0.09 0.62 16 15 N -0.89 -21.81 8.63 55.50 0.48 -21.33 16 16 Si 0.94 19.50 29.57 -169.99 -5.03 14.47 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 C 0.22 4.50 4.76 -6.83 -0.03 4.47 16 21 C 0.26 5.77 10.67 -20.76 -0.22 5.55 16 22 N -0.48 -11.35 18.35 42.15 0.77 -10.58 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 0.94 7.67 -51.93 -0.40 0.54 16 25 H 0.08 1.39 6.65 -51.93 -0.35 1.04 16 26 H 0.39 2.85 9.06 45.56 0.41 3.26 16 27 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 28 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.13 2.48 5.17 -52.49 -0.27 2.20 16 30 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.14 2.89 6.26 -51.93 -0.33 2.57 16 32 H 0.08 1.43 6.20 -51.93 -0.32 1.10 16 LS Contribution 279.70 15.07 4.22 4.22 Total: -1.00 -30.35 279.70 -4.76 -35.11 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -2.04 Total: 6.24 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.69 Total: 3.37 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.95 Total: -42.44 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.16 Total: -20.97 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.35 -4.76 -35.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125667298.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.918 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds