Wall clock time and date at job start Mon Mar 30 2020 04:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38477 * 120.10572 * 2 1 4 4 O 1.35906 * 119.98178 * 0.02839 * 3 2 1 5 5 C 1.38828 * 120.03199 * 180.02562 * 3 2 1 6 6 C 1.38302 * 120.25533 * 359.97436 * 5 3 2 7 7 C 1.37950 * 120.21269 * 359.72968 * 6 5 3 8 8 C 1.39554 * 120.10371 * 180.02562 * 2 1 3 9 9 C 1.47740 * 120.12437 * 359.97438 * 8 2 1 10 10 O 1.21590 * 119.99917 * 303.66420 * 9 8 2 11 11 N 1.34779 * 119.99800 * 123.38961 * 9 8 2 12 12 C 1.36876 * 119.99685 * 184.94732 * 11 9 8 13 13 H 1.07999 * 119.99581 * 14.34217 * 12 11 9 14 14 C 1.39044 * 119.99744 * 194.33686 * 12 11 9 15 15 N 1.31359 * 120.00014 * 12.07719 * 14 12 11 16 16 Si 1.86803 * 119.99799 * 192.07419 * 14 12 11 17 17 H 1.48503 * 109.47105 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46978 * 119.99949 * 16 14 12 19 19 H 1.48502 * 109.47009 * 240.00029 * 16 14 12 20 20 C 1.46496 * 120.00088 * 4.94814 * 11 9 8 21 21 C 1.47208 * 109.46752 * 89.47561 * 20 11 9 22 22 N 5.52874 * 129.19429 * 195.14344 * 2 1 3 23 23 H 1.09001 * 109.46988 * 274.49438 * 1 2 3 24 24 H 1.09005 * 109.47047 * 34.48702 * 1 2 3 25 25 H 1.08996 * 109.47614 * 154.49226 * 1 2 3 26 26 H 0.96698 * 114.00238 * 90.00052 * 4 3 2 27 27 H 1.08003 * 119.87179 * 180.02562 * 5 3 2 28 28 H 1.07997 * 119.89746 * 180.02562 * 6 5 3 29 29 H 1.07992 * 120.02494 * 180.29437 * 7 6 5 30 30 H 0.97001 * 119.99891 * 180.02562 * 15 14 12 31 31 H 1.08997 * 109.47122 * 209.47571 * 20 11 9 32 32 H 1.08997 * 109.47427 * 329.47862 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 8 1.5239 2.3760 0.0006 5 6 3.5899 1.1962 -0.0005 6 6 4.2852 0.0006 -0.0005 7 6 3.6037 -1.1987 0.0056 8 6 2.2070 -1.2073 -0.0005 9 6 1.4734 -2.4897 -0.0005 10 8 0.6652 -2.7278 0.8761 11 7 1.6960 -3.3934 -0.9754 12 6 0.9452 -4.5363 -1.0335 13 1 0.0352 -4.6145 -0.4570 14 6 1.3539 -5.5967 -1.8347 15 7 2.5638 -5.6050 -2.3463 16 14 0.1826 -7.0094 -2.1834 17 1 -1.1101 -6.7619 -1.4957 18 1 -0.0475 -7.1118 -3.6469 19 1 0.7741 -8.2773 -1.6854 20 6 2.7415 -3.1523 -1.9729 21 6 4.0168 -3.7076 -1.4909 22 7 5.0009 -4.1360 -1.1193 23 1 -0.3633 0.0805 1.0245 24 1 -0.3633 0.8471 -0.5819 25 1 -0.3634 -0.9274 -0.4425 26 1 1.3281 2.7167 0.8841 27 1 4.1290 2.1320 -0.0001 28 1 5.3652 0.0060 -0.0005 29 1 4.1497 -2.1305 0.0104 30 1 2.8488 -6.3445 -2.9055 31 1 2.4668 -3.6344 -2.9110 32 1 2.8500 -2.0797 -2.1336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125667298.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:45 Heat of formation + Delta-G solvation = -27.761973 kcal Electronic energy + Delta-G solvation = -19317.365853 eV Core-core repulsion = 16243.278327 eV Total energy + Delta-G solvation = -3074.087526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.51094 -39.94731 -37.73741 -37.39205 -36.20983 -33.82662 -33.54845 -31.13872 -29.23498 -28.01489 -26.84158 -24.30899 -22.70023 -21.13400 -19.89243 -19.31036 -18.06936 -17.81463 -17.17859 -16.95032 -16.44907 -15.96219 -15.80297 -15.18661 -14.77772 -14.70191 -14.29721 -14.12155 -13.88264 -13.46787 -13.29473 -13.15598 -12.98861 -12.96225 -12.79980 -12.48203 -12.26155 -12.13227 -12.08990 -11.59419 -11.21533 -10.55322 -10.06739 -9.74674 -9.53101 -8.43833 -6.05017 0.04747 0.27300 1.35957 1.44816 1.57706 1.76736 1.94275 2.22901 2.31198 2.61609 2.94095 3.01521 3.38470 3.54405 3.80703 3.88971 4.05688 4.13234 4.45348 4.49422 4.72709 4.78228 4.79363 4.84776 4.92187 5.25975 5.34159 5.38905 5.42802 5.49830 5.80131 5.95071 6.32262 6.90034 6.95058 7.01385 7.23777 7.79695 8.56731 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.007073 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.241542 B = 3957.925020 C = 4707.181185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.085 4.085 3 C 0.108 3.892 4 O -0.495 6.495 5 C -0.119 4.119 6 C -0.102 4.102 7 C -0.120 4.120 8 C -0.109 4.109 9 C 0.487 3.513 10 O -0.609 6.609 11 N -0.444 5.444 12 C -0.336 4.336 13 H 0.089 0.911 14 C 0.002 3.998 15 N -0.897 5.897 16 Si 0.996 3.004 17 H -0.270 1.270 18 H -0.261 1.261 19 H -0.285 1.285 20 C 0.224 3.776 21 C 0.269 3.731 22 N -0.506 5.506 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.043 0.957 26 H 0.410 0.590 27 H 0.166 0.834 28 H 0.155 0.845 29 H 0.105 0.895 30 H 0.278 0.722 31 H 0.134 0.866 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.471 13.974 -0.690 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.087 4.087 3 C 0.063 3.937 4 O -0.308 6.308 5 C -0.137 4.137 6 C -0.120 4.120 7 C -0.139 4.139 8 C -0.113 4.113 9 C 0.278 3.722 10 O -0.495 6.495 11 N -0.163 5.163 12 C -0.464 4.464 13 H 0.106 0.894 14 C -0.199 4.199 15 N -0.537 5.537 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.186 1.186 19 H -0.211 1.211 20 C 0.097 3.903 21 C -0.048 4.048 22 N -0.187 5.187 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.269 0.731 27 H 0.183 0.817 28 H 0.173 0.827 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.633 13.016 -0.467 13.127 hybrid contribution -0.826 -1.252 0.339 1.537 sum 0.807 11.765 -0.128 11.793 Atomic orbital electron populations 1.20611 0.90159 1.02372 1.02767 1.20367 0.97279 0.91420 0.99608 1.18083 0.90193 0.84316 1.01078 1.84742 1.76366 1.34325 1.35350 1.21780 0.92756 0.99683 0.99462 1.21176 1.01273 0.90536 0.99039 1.21432 0.92420 0.99578 1.00472 1.19740 0.94132 0.92651 1.04744 1.18608 0.85682 0.85744 0.82198 1.90595 1.40139 1.80477 1.38266 1.43724 1.30303 1.18333 1.23908 1.19823 1.05484 0.92822 1.28223 0.89361 1.26012 0.97574 1.00275 0.96014 1.69786 1.16751 1.33565 1.33599 0.84812 0.77849 0.76615 0.78717 1.19472 1.18598 1.21136 1.19069 0.77999 0.99237 0.93993 1.29379 0.93498 0.90198 0.91716 1.80886 1.15243 1.12364 1.10196 0.90782 0.89153 0.93831 0.73108 0.81677 0.82687 0.87659 0.91168 0.84868 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.24 9.02 71.24 0.64 -2.60 16 2 C -0.09 -2.78 5.93 -19.49 -0.12 -2.89 16 3 C 0.11 2.72 6.67 22.47 0.15 2.87 16 4 O -0.49 -9.72 12.62 -92.49 -1.17 -10.89 16 5 C -0.12 -2.58 9.98 22.43 0.22 -2.35 16 6 C -0.10 -2.59 10.03 22.22 0.22 -2.36 16 7 C -0.12 -4.12 7.80 22.55 0.18 -3.94 16 8 C -0.11 -4.22 4.60 -20.10 -0.09 -4.31 16 9 C 0.49 23.55 5.94 86.76 0.52 24.07 16 10 O -0.61 -33.64 15.78 -4.00 -0.06 -33.70 16 11 N -0.44 -21.77 2.58 -648.82 -1.67 -23.44 16 12 C -0.34 -17.85 9.42 84.10 0.79 -17.06 16 13 H 0.09 5.00 7.31 -2.91 -0.02 4.97 16 14 C 0.00 0.12 5.15 84.96 0.44 0.56 16 15 N -0.90 -44.53 8.63 21.68 0.19 -44.34 16 16 Si 1.00 40.44 29.57 68.60 2.03 42.46 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 20 C 0.22 9.38 4.76 84.58 0.40 9.79 16 21 C 0.27 12.13 10.67 89.45 0.95 13.08 16 22 N -0.51 -24.06 18.35 20.01 0.37 -23.69 16 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.09 2.36 7.67 -2.38 -0.02 2.34 16 25 H 0.04 1.64 6.65 -2.39 -0.02 1.63 16 26 H 0.41 4.11 9.06 -74.06 -0.67 3.44 16 27 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.11 4.09 5.17 -2.91 -0.02 4.07 16 30 H 0.28 13.19 8.31 -92.71 -0.77 12.42 16 31 H 0.13 5.69 6.26 -2.39 -0.01 5.68 16 32 H 0.11 3.95 6.20 -2.39 -0.01 3.94 16 Total: -1.00 -67.71 279.70 4.50 -63.21 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.51 Total: 15.54 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 4.31 Total: 14.84 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -1.12 Total: -91.48 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.23 Total: -44.59 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -67.71 4.50 -63.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125667298.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.452 kcal (2) G-P(sol) polarization free energy of solvation -67.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds