Wall clock time and date at job start Mon Mar 30 2020 05:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86805 * 119.99761 * 2 1 4 4 H 1.48501 * 109.46790 * 239.99956 * 3 2 1 5 5 H 1.48493 * 109.47145 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47222 * 119.99959 * 3 2 1 7 7 C 1.39908 * 120.00627 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00287 * 184.44270 * 7 2 1 9 9 C 1.41156 * 119.99559 * 4.44312 * 7 2 1 10 10 C 1.40868 * 120.16350 * 144.93829 * 9 7 2 11 11 C 1.36376 * 119.82348 * 179.68918 * 10 9 7 12 12 C 1.39476 * 120.17327 * 0.61097 * 11 10 9 13 13 N 1.39230 * 119.83731 * 179.68933 * 12 11 10 14 14 C 1.34778 * 119.99878 * 35.26735 * 13 12 11 15 15 O 1.21286 * 120.00172 * 355.70721 * 14 13 12 16 16 C 1.50697 * 120.00139 * 175.71564 * 14 13 12 17 17 N 1.46907 * 112.85090 * 25.32647 * 16 14 13 18 18 C 1.53782 * 113.61301 * 254.13485 * 16 14 13 19 19 C 1.53961 * 87.02154 * 220.04541 * 18 16 14 20 20 C 1.53777 * 113.61660 * 156.52390 * 16 14 13 21 21 C 1.39480 * 120.33056 * 359.66224 * 12 11 10 22 22 C 1.36378 * 120.16926 * 0.02973 * 21 12 11 23 23 H 0.97003 * 120.00515 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.08385 * 359.97438 * 10 9 7 25 25 H 1.08005 * 119.91168 * 180.27193 * 11 10 9 26 26 H 0.96994 * 120.00404 * 215.26499 * 13 12 11 27 27 H 1.00897 * 110.99711 * 309.67323 * 17 16 14 28 28 H 1.00897 * 110.99404 * 73.62181 * 17 16 14 29 29 H 1.09004 * 113.61276 * 334.56229 * 18 16 14 30 30 H 1.09002 * 113.61674 * 105.46849 * 18 16 14 31 31 H 1.09002 * 113.53666 * 270.81628 * 19 18 16 32 32 H 1.08993 * 113.67027 * 139.92652 * 19 18 16 33 33 H 1.08995 * 113.61888 * 254.52203 * 20 16 14 34 34 H 1.08997 * 113.61451 * 25.43324 * 20 16 14 35 35 H 1.08000 * 119.91935 * 180.02562 * 21 12 11 36 36 H 1.08007 * 120.08475 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0084 -1.2116 0.0005 8 1 3.0859 -1.2129 0.0730 9 6 1.3058 -2.4322 -0.0936 10 6 1.8625 -3.5167 -0.7996 11 6 1.1806 -4.6949 -0.8808 12 6 -0.0706 -4.8237 -0.2780 13 7 -0.7636 -6.0278 -0.3708 14 6 -0.0904 -7.1953 -0.3599 15 8 1.1225 -7.1960 -0.3480 16 6 -0.8445 -8.5000 -0.3629 17 7 -2.1835 -8.3836 -0.9559 18 6 -0.8328 -9.2213 0.9952 19 6 -0.6537 -10.5317 0.2071 20 6 -0.0283 -9.6821 -0.9119 21 6 -0.6308 -3.7526 0.4178 22 6 0.0419 -2.5701 0.5130 23 1 -0.4851 0.8400 -0.0004 24 1 2.8289 -3.4168 -1.2713 25 1 1.6080 -5.5287 -1.4179 26 1 -1.7308 -6.0264 -0.4432 27 1 -2.6925 -7.6124 -0.5507 28 1 -2.1279 -8.2929 -1.9592 29 1 0.0245 -8.9657 1.6180 30 1 -1.7800 -9.1590 1.5309 31 1 -1.5956 -11.0016 -0.0761 32 1 0.0459 -11.2282 0.6692 33 1 -0.3271 -9.9912 -1.9135 34 1 1.0493 -9.5527 -0.8115 35 1 -1.5999 -3.8597 0.8824 36 1 -0.3934 -1.7414 1.0518 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147712657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:47 Heat of formation + Delta-G solvation = 7.375468 kcal Electronic energy + Delta-G solvation = -18886.365558 eV Core-core repulsion = 15949.634800 eV Total energy + Delta-G solvation = -2936.730758 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52439 -38.28965 -36.82029 -34.59415 -33.14483 -31.76726 -29.60972 -28.90382 -25.96651 -25.73508 -24.44817 -21.82976 -21.02536 -20.02832 -18.73915 -17.72220 -17.28626 -16.41926 -15.80730 -15.28389 -15.09501 -14.74175 -14.43847 -13.94265 -13.47549 -12.99449 -12.72551 -12.39068 -12.17740 -11.92654 -11.65681 -11.48460 -11.21891 -11.12368 -11.03410 -10.85534 -10.56170 -10.44159 -10.30449 -9.94507 -9.74236 -9.23477 -8.90564 -8.52041 -7.59148 -6.92623 -6.65307 -4.37530 2.47882 2.96971 3.05160 3.07368 3.10141 3.27038 3.59629 3.95526 4.13216 4.48068 4.63502 4.67468 4.76142 4.92134 5.35430 5.61806 5.65096 5.77772 5.85084 5.86433 6.07098 6.14513 6.26396 6.39045 6.66396 6.75415 6.91891 7.03360 7.08208 7.16974 7.25926 7.60061 7.69698 7.82574 8.02763 8.20262 8.27538 8.57833 8.67890 8.89393 8.95931 10.25938 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.056893 B = 0.004038 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.035884 B = 6932.347092 C = 7182.380324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.085 4.085 12 C 0.000 4.000 13 N -0.652 5.652 14 C 0.479 3.521 15 O -0.528 6.528 16 C 0.070 3.930 17 N -0.816 5.816 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.141 4.141 23 H 0.278 0.722 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.390 0.610 27 H 0.344 0.656 28 H 0.349 0.651 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 -12.164 -0.512 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.105 4.105 12 C -0.092 4.092 13 N -0.296 5.296 14 C 0.264 3.736 15 O -0.403 6.403 16 C -0.027 4.027 17 N -0.349 5.349 18 C -0.151 4.151 19 C -0.164 4.164 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.161 4.161 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.224 0.776 27 H 0.158 0.842 28 H 0.163 0.837 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.793 -12.729 -0.192 13.603 hybrid contribution 0.037 1.914 -0.451 1.966 sum -4.756 -10.815 -0.643 11.833 Atomic orbital electron populations 1.69748 1.07285 1.28835 1.38157 1.25876 0.94953 1.01160 0.92460 0.86237 0.79799 0.80031 0.79816 1.19088 1.20409 1.19018 1.19482 0.94771 0.90220 1.44814 0.90606 1.17723 0.92144 0.91932 0.88320 1.20836 1.01295 0.94733 1.05736 1.20382 0.94182 0.96992 0.98924 1.17288 0.96515 0.85588 1.09789 1.43082 1.09448 1.05191 1.71830 1.21449 0.88913 0.85871 0.77374 1.90662 1.13773 1.87082 1.48823 1.22319 0.89158 0.91625 0.99592 1.58690 1.14468 1.51519 1.10202 1.22896 1.02792 0.95451 0.93979 1.22729 1.01082 0.95896 0.96727 1.22930 1.00225 0.93122 0.98920 1.20334 0.99226 0.94136 1.00375 1.21207 0.97083 0.95775 1.02004 0.91076 0.88564 0.87594 0.77629 0.84206 0.83721 0.89342 0.90456 0.89500 0.91443 0.90956 0.88275 0.89149 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.92 10.59 55.55 0.59 -20.33 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 3 Si 0.92 18.93 29.56 -169.99 -5.03 13.91 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.38 9.03 -37.85 -0.34 -12.72 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 9 C 0.10 2.73 5.55 -106.80 -0.59 2.14 16 10 C -0.21 -5.27 9.74 -39.26 -0.38 -5.65 16 11 C -0.08 -2.06 8.61 -39.79 -0.34 -2.40 16 12 C 0.00 0.01 6.31 -83.58 -0.53 -0.52 16 13 N -0.65 -11.38 5.26 -9.74 -0.05 -11.43 16 14 C 0.48 8.27 6.98 -10.99 -0.08 8.20 16 15 O -0.53 -11.25 13.46 5.55 0.07 -11.17 16 16 C 0.07 0.87 1.55 -131.94 -0.20 0.67 16 17 N -0.82 -8.07 9.12 0.47 0.00 -8.07 16 18 C -0.11 -1.31 7.44 -25.82 -0.19 -1.50 16 19 C -0.13 -1.27 8.00 -25.82 -0.21 -1.48 16 20 C -0.11 -1.33 7.33 -25.91 -0.19 -1.52 16 21 C -0.12 -2.76 9.90 -39.79 -0.39 -3.15 16 22 C -0.14 -3.63 8.62 -39.26 -0.34 -3.97 16 23 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 24 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 25 H 0.11 2.54 6.22 -52.48 -0.33 2.22 16 26 H 0.39 5.39 6.99 -40.82 -0.29 5.10 16 27 H 0.34 3.08 7.32 -39.29 -0.29 2.79 16 28 H 0.35 3.15 9.07 -39.29 -0.36 2.79 16 29 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.32 7.37 -51.93 -0.38 0.94 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.13 3.51 6.13 -52.48 -0.32 3.19 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -29.72 299.81 -8.24 -37.96 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -4.46 Total: 14.84 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -3.88 Total: -20.23 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.54 Total: -39.83 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.72 -8.24 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147712657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.337 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds