Wall clock time and date at job start Mon Mar 30 2020 05:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86805 * 119.99761 * 2 1 4 4 H 1.48501 * 109.46790 * 239.99956 * 3 2 1 5 5 H 1.48493 * 109.47145 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47222 * 119.99959 * 3 2 1 7 7 C 1.39908 * 120.00627 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00287 * 184.44270 * 7 2 1 9 9 C 1.41156 * 119.99559 * 4.44312 * 7 2 1 10 10 C 1.40868 * 120.16350 * 144.93829 * 9 7 2 11 11 C 1.36376 * 119.82348 * 179.68918 * 10 9 7 12 12 C 1.39476 * 120.17327 * 0.61097 * 11 10 9 13 13 N 1.39230 * 119.83731 * 179.68933 * 12 11 10 14 14 C 1.34778 * 119.99878 * 35.26735 * 13 12 11 15 15 O 1.21286 * 120.00172 * 355.70721 * 14 13 12 16 16 C 1.50697 * 120.00139 * 175.71564 * 14 13 12 17 17 N 1.46907 * 112.85090 * 25.32647 * 16 14 13 18 18 C 1.53782 * 113.61301 * 254.13485 * 16 14 13 19 19 C 1.53961 * 87.02154 * 220.04541 * 18 16 14 20 20 C 1.53777 * 113.61660 * 156.52390 * 16 14 13 21 21 C 1.39480 * 120.33056 * 359.66224 * 12 11 10 22 22 C 1.36378 * 120.16926 * 0.02973 * 21 12 11 23 23 H 0.97003 * 120.00515 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.08385 * 359.97438 * 10 9 7 25 25 H 1.08005 * 119.91168 * 180.27193 * 11 10 9 26 26 H 0.96994 * 120.00404 * 215.26499 * 13 12 11 27 27 H 1.00897 * 110.99711 * 309.67323 * 17 16 14 28 28 H 1.00897 * 110.99404 * 73.62181 * 17 16 14 29 29 H 1.09004 * 113.61276 * 334.56229 * 18 16 14 30 30 H 1.09002 * 113.61674 * 105.46849 * 18 16 14 31 31 H 1.09002 * 113.53666 * 270.81628 * 19 18 16 32 32 H 1.08993 * 113.67027 * 139.92652 * 19 18 16 33 33 H 1.08995 * 113.61888 * 254.52203 * 20 16 14 34 34 H 1.08997 * 113.61451 * 25.43324 * 20 16 14 35 35 H 1.08000 * 119.91935 * 180.02562 * 21 12 11 36 36 H 1.08007 * 120.08475 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0084 -1.2116 0.0005 8 1 3.0859 -1.2129 0.0730 9 6 1.3058 -2.4322 -0.0936 10 6 1.8625 -3.5167 -0.7996 11 6 1.1806 -4.6949 -0.8808 12 6 -0.0706 -4.8237 -0.2780 13 7 -0.7636 -6.0278 -0.3708 14 6 -0.0904 -7.1953 -0.3599 15 8 1.1225 -7.1960 -0.3480 16 6 -0.8445 -8.5000 -0.3629 17 7 -2.1835 -8.3836 -0.9559 18 6 -0.8328 -9.2213 0.9952 19 6 -0.6537 -10.5317 0.2071 20 6 -0.0283 -9.6821 -0.9119 21 6 -0.6308 -3.7526 0.4178 22 6 0.0419 -2.5701 0.5130 23 1 -0.4851 0.8400 -0.0004 24 1 2.8289 -3.4168 -1.2713 25 1 1.6080 -5.5287 -1.4179 26 1 -1.7308 -6.0264 -0.4432 27 1 -2.6925 -7.6124 -0.5507 28 1 -2.1279 -8.2929 -1.9592 29 1 0.0245 -8.9657 1.6180 30 1 -1.7800 -9.1590 1.5309 31 1 -1.5956 -11.0016 -0.0761 32 1 0.0459 -11.2282 0.6692 33 1 -0.3271 -9.9912 -1.9135 34 1 1.0493 -9.5527 -0.8115 35 1 -1.5999 -3.8597 0.8824 36 1 -0.3934 -1.7414 1.0518 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147712657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:47 Heat of formation + Delta-G solvation = -12.411412 kcal Electronic energy + Delta-G solvation = -18887.223582 eV Core-core repulsion = 15949.634800 eV Total energy + Delta-G solvation = -2937.588781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82693 -39.79923 -38.36291 -36.27613 -34.87580 -32.81559 -31.51537 -30.73161 -27.43155 -26.69572 -25.90694 -23.51965 -22.79264 -21.56009 -19.85725 -19.32849 -18.90620 -17.98890 -17.05071 -16.77533 -16.17478 -16.09759 -15.90807 -15.65169 -14.87406 -14.60107 -14.34959 -14.07357 -13.72774 -13.38334 -13.25044 -12.89882 -12.78302 -12.65569 -12.38268 -12.23203 -11.94029 -11.73923 -11.64760 -11.38036 -11.23626 -11.10074 -10.63914 -9.72331 -9.51432 -8.80512 -8.54008 -6.36843 0.72866 1.07765 1.38705 1.42539 1.50253 1.67794 2.21503 2.22854 2.76093 3.23049 3.48935 3.62802 3.66663 3.81095 3.88804 4.33050 4.42343 4.49235 4.76330 4.84493 4.87747 4.97988 5.04896 5.08948 5.09689 5.17119 5.29771 5.36789 5.44621 5.64135 5.80634 5.90599 5.99187 6.09670 6.32382 6.34433 6.61696 6.64972 6.92693 6.94750 7.27556 8.39084 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.056893 B = 0.004038 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.035884 B = 6932.347092 C = 7182.380324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.031 3.969 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.501 4.501 8 H 0.071 0.929 9 C 0.070 3.930 10 C -0.223 4.223 11 C -0.097 4.097 12 C 0.015 3.985 13 N -0.645 5.645 14 C 0.476 3.524 15 O -0.571 6.571 16 C 0.079 3.921 17 N -0.801 5.801 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.158 4.158 23 H 0.286 0.714 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.411 0.589 27 H 0.352 0.648 28 H 0.357 0.643 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.028 -13.202 -0.510 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.181 4.181 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.532 4.532 8 H 0.089 0.911 9 C 0.067 3.933 10 C -0.243 4.243 11 C -0.117 4.117 12 C -0.078 4.078 13 N -0.290 5.290 14 C 0.263 3.737 15 O -0.449 6.449 16 C -0.018 4.018 17 N -0.335 5.335 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.138 4.138 22 C -0.178 4.178 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.248 0.752 27 H 0.167 0.833 28 H 0.172 0.828 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.143 0.857 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.536 -13.801 -0.196 15.271 hybrid contribution 0.503 2.084 -0.465 2.194 sum -6.032 -11.717 -0.661 13.195 Atomic orbital electron populations 1.69800 1.08493 1.30152 1.38129 1.26714 0.95841 1.04181 0.91403 0.85155 0.78545 0.75567 0.79804 1.18899 1.18973 1.18496 1.19707 0.94836 0.91425 1.47222 0.91093 1.18028 0.93226 0.92587 0.89413 1.20959 1.01702 0.95311 1.06295 1.20489 0.95240 0.96429 0.99551 1.17357 0.95815 0.87135 1.07513 1.43021 1.10454 1.03804 1.71737 1.22556 0.88715 0.87071 0.75401 1.90646 1.16077 1.87764 1.50401 1.22371 0.89858 0.88676 1.00928 1.58715 1.12272 1.51745 1.10795 1.22933 1.02882 0.96161 0.93407 1.22689 1.01823 0.95151 0.95108 1.22949 0.98999 0.93160 1.00533 1.20589 1.00295 0.93147 0.99800 1.21195 0.97260 0.96679 1.02686 0.90311 0.88649 0.87705 0.75172 0.83306 0.82832 0.91089 0.88943 0.87876 0.90338 0.89453 0.90459 0.85740 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.68 10.59 21.82 0.23 -43.45 16 2 C 0.03 1.58 5.42 85.24 0.46 2.05 16 3 Si 0.99 38.98 29.56 68.60 2.03 41.01 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 5 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.50 -27.84 9.03 23.39 0.21 -27.63 16 8 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 9 C 0.07 3.90 5.55 -21.28 -0.12 3.78 16 10 C -0.22 -11.84 9.74 22.48 0.22 -11.62 16 11 C -0.10 -4.79 8.61 22.13 0.19 -4.60 16 12 C 0.02 0.67 6.31 38.56 0.24 0.91 16 13 N -0.64 -21.41 5.26 -303.12 -1.60 -23.01 16 14 C 0.48 15.87 6.98 87.66 0.61 16.48 16 15 O -0.57 -24.43 13.46 -3.05 -0.04 -24.48 16 16 C 0.08 1.79 1.55 3.30 0.01 1.80 16 17 N -0.80 -13.09 9.12 -152.43 -1.39 -14.48 16 18 C -0.12 -2.40 7.44 31.18 0.23 -2.17 16 19 C -0.11 -1.87 8.00 31.19 0.25 -1.62 16 20 C -0.12 -2.52 7.33 31.12 0.23 -2.30 16 21 C -0.12 -5.34 9.90 22.13 0.22 -5.12 16 22 C -0.16 -8.31 8.62 22.48 0.19 -8.12 16 23 H 0.29 13.51 8.30 -92.71 -0.77 12.75 16 24 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 25 H 0.10 5.15 6.22 -2.91 -0.02 5.13 16 26 H 0.41 10.18 6.99 -92.71 -0.65 9.54 16 27 H 0.35 4.99 7.32 -89.70 -0.66 4.34 16 28 H 0.36 5.21 9.07 -89.70 -0.81 4.40 16 29 H 0.07 1.74 8.09 -2.38 -0.02 1.72 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 2.02 7.37 -2.39 -0.02 2.00 16 35 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 Total: -1.00 -66.14 299.81 1.19 -64.94 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.99 Total: 37.62 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 2.95 Total: -38.16 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -2.75 Total: -80.94 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.04 Total: -24.48 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -66.14 1.19 -64.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147712657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.532 kcal (2) G-P(sol) polarization free energy of solvation -66.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds