Wall clock time and date at job start Mon Mar 30 2020 04:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47160 * 2 1 4 4 Cl 1.80300 * 109.47043 * 119.99711 * 2 1 3 5 5 C 1.50697 * 109.47196 * 239.99801 * 2 1 3 6 6 O 1.21284 * 119.99937 * 315.94854 * 5 2 1 7 7 N 1.34779 * 120.00376 * 135.94894 * 5 2 1 8 8 C 1.47077 * 120.87780 * 5.19081 * 7 5 2 9 9 C 1.53693 * 108.28023 * 128.75563 * 8 7 5 10 10 N 1.46897 * 109.25519 * 54.07738 * 9 8 7 11 11 C 1.46907 * 110.99816 * 172.61002 * 10 9 8 12 12 C 1.50696 * 109.47045 * 294.30592 * 11 10 9 13 13 H 1.07998 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99733 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00330 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99921 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47435 * 89.99616 * 16 14 12 18 18 H 1.48504 * 109.47103 * 209.99815 * 16 14 12 19 19 H 1.48504 * 109.47194 * 329.99367 * 16 14 12 20 20 C 1.46902 * 111.27114 * 296.75908 * 10 9 8 21 21 C 1.47071 * 120.88334 * 185.46767 * 7 5 2 22 22 H 1.08996 * 109.47160 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46828 * 300.00343 * 1 2 3 24 24 H 1.09006 * 109.46777 * 60.00035 * 1 2 3 25 25 H 1.09004 * 109.62938 * 248.52439 * 8 7 5 26 26 H 1.09007 * 109.63103 * 9.09752 * 8 7 5 27 27 H 1.09002 * 109.64349 * 294.07565 * 9 8 7 28 28 H 1.08998 * 109.42166 * 173.94765 * 9 8 7 29 29 H 1.09004 * 109.46683 * 54.30340 * 11 10 9 30 30 H 1.08995 * 109.47164 * 174.30113 * 11 10 9 31 31 H 0.97006 * 120.00781 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.49249 * 303.14477 * 20 10 9 33 33 H 1.08994 * 109.51225 * 183.07734 * 20 10 9 34 34 H 1.09009 * 109.63086 * 350.89552 * 21 7 5 35 35 H 1.08991 * 109.63253 * 111.47709 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 17 2.1310 -0.8499 1.4722 5 6 2.0324 -0.7104 -1.2304 6 8 1.5228 -1.7546 -1.5783 7 7 3.0479 -0.1855 -1.9443 8 6 3.7546 1.0176 -1.4794 9 6 5.2636 0.7264 -1.4943 10 7 5.6529 0.2552 -2.8301 11 6 7.1126 0.1321 -2.9402 12 6 7.7412 1.4978 -2.8362 13 1 7.1186 2.3700 -2.7023 14 6 9.1110 1.6338 -2.9132 15 7 9.8692 0.5718 -3.0769 16 14 9.8902 3.3267 -2.7851 17 1 10.1893 3.6276 -1.3620 18 1 11.1494 3.3529 -3.5719 19 1 8.9513 4.3455 -3.3197 20 6 4.9911 -1.0137 -3.1615 21 6 3.4749 -0.7972 -3.2118 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 3.5332 1.8523 -2.1446 26 1 3.4370 1.2599 -0.4652 27 1 5.4960 -0.0410 -0.7559 28 1 5.8111 1.6383 -1.2563 29 1 7.4854 -0.5017 -2.1355 30 1 7.3682 -0.3133 -3.9016 31 1 10.8330 0.6674 -3.1314 32 1 5.2273 -1.7569 -2.3999 33 1 5.3409 -1.3641 -4.1325 34 1 2.9723 -1.7555 -3.3436 35 1 3.2271 -0.1337 -4.0403 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168039094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:58 Heat of formation + Delta-G solvation = -37.284615 kcal Electronic energy + Delta-G solvation = -17890.900524 eV Core-core repulsion = 14949.800310 eV Total energy + Delta-G solvation = -2941.100214 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18377 -37.69289 -36.26287 -34.52979 -32.81032 -32.29951 -30.75539 -28.36113 -25.94546 -24.47429 -23.23531 -21.93052 -20.52251 -18.72662 -17.60851 -16.44867 -16.10463 -15.60669 -14.96206 -14.64900 -14.47365 -13.96674 -13.82832 -13.63459 -13.47485 -12.74036 -12.43642 -12.33408 -12.02717 -11.77778 -11.34716 -11.20775 -11.13813 -11.01725 -10.79793 -10.73165 -10.62660 -10.58427 -9.94299 -9.66157 -9.31789 -8.61249 -8.49280 -7.38715 -6.09179 -4.11623 1.51962 2.79515 2.95968 3.27219 3.34129 3.37280 4.16170 4.35104 4.41807 4.56952 4.78808 5.17632 5.26174 5.28581 5.31931 5.35538 5.47444 5.57970 5.66523 5.77867 5.80511 5.93558 6.22864 6.38146 6.40749 6.55481 7.16879 7.23907 7.35295 7.69906 7.96494 8.02033 8.07393 8.42789 8.95304 9.53135 11.01621 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.032068 B = 0.004764 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.934479 B = 5876.522500 C = 6236.411749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.032 4.032 3 H 0.120 0.880 4 Cl -0.145 7.145 5 C 0.512 3.488 6 O -0.531 6.531 7 N -0.600 5.600 8 C 0.103 3.897 9 C 0.051 3.949 10 N -0.536 5.536 11 C 0.194 3.806 12 C -0.511 4.511 13 H 0.064 0.936 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.040 3.960 21 C 0.118 3.882 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.028 0.972 28 H 0.099 0.901 29 H -0.008 1.008 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.056 0.957 5.278 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 H 0.138 0.862 4 Cl -0.118 7.118 5 C 0.298 3.702 6 O -0.408 6.408 7 N -0.333 5.333 8 C -0.019 4.019 9 C -0.078 4.078 10 N -0.261 5.261 11 C 0.069 3.931 12 C -0.549 4.549 13 H 0.082 0.918 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.089 4.089 21 C -0.004 4.004 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.117 0.883 29 H 0.010 0.990 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.226 0.625 4.826 16.940 hybrid contribution 1.064 0.299 0.742 1.331 sum -15.161 0.924 5.567 16.178 Atomic orbital electron populations 1.21967 0.90190 1.04765 1.03365 1.24233 0.98970 0.99042 0.85598 0.86209 1.98755 1.89969 1.81521 1.41597 1.20198 0.80264 0.85473 0.84294 1.90697 1.57921 1.22217 1.70011 1.48262 1.32445 1.29186 1.23409 1.22255 0.93381 0.86813 0.99496 1.22393 0.92579 1.01845 0.91007 1.62097 1.11991 1.26261 1.25733 1.19733 0.79419 0.97419 0.96553 1.21118 0.91215 0.92894 1.49706 0.91800 1.24990 0.97286 0.96932 0.95305 1.69952 1.04994 1.28713 1.49964 0.86498 0.78768 0.84168 0.77983 1.20713 1.21237 1.19738 1.22405 0.92824 0.92367 1.01305 1.21823 0.95167 0.99064 0.84391 0.90144 0.90487 0.90581 0.90129 0.90189 0.95380 0.88272 0.99040 0.94966 0.92825 0.95377 0.89894 0.89253 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.08 37.16 0.34 -0.95 16 2 C -0.03 -0.35 3.18 -27.88 -0.09 -0.44 16 3 H 0.12 1.05 5.76 -51.93 -0.30 0.75 16 4 Cl -0.14 -1.80 28.59 -51.86 -1.48 -3.28 16 5 C 0.51 7.34 6.71 -10.99 -0.07 7.27 16 6 O -0.53 -9.19 15.94 5.55 0.09 -9.10 16 7 N -0.60 -8.68 3.00 -172.19 -0.52 -9.20 16 8 C 0.10 1.39 6.35 -3.37 -0.02 1.37 16 9 C 0.05 0.90 5.47 -3.47 -0.02 0.88 16 10 N -0.54 -10.85 4.62 -235.47 -1.09 -11.94 16 11 C 0.19 4.85 4.72 -4.97 -0.02 4.82 16 12 C -0.51 -13.68 8.41 -34.44 -0.29 -13.97 16 13 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.07 13.28 55.43 0.74 -25.34 16 16 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 20 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 21 C 0.12 1.77 6.61 -3.61 -0.02 1.74 16 22 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 0.87 5.55 -51.93 -0.29 0.58 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.10 1.85 6.67 -51.93 -0.35 1.50 16 29 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 34 H 0.09 1.34 7.04 -51.92 -0.37 0.97 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 299.20 15.07 4.51 4.51 Total: -1.00 -30.70 299.20 -8.10 -38.80 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -5.01 Total: -3.20 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.32 Total: 2.87 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.87 Total: -46.47 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.48 Total: -3.28 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.70 -8.10 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168039094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.511 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds