Wall clock time and date at job start Mon Mar 30 2020 04:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47160 * 2 1 4 4 Cl 1.80300 * 109.47043 * 119.99711 * 2 1 3 5 5 C 1.50697 * 109.47196 * 239.99801 * 2 1 3 6 6 O 1.21284 * 119.99937 * 315.94854 * 5 2 1 7 7 N 1.34779 * 120.00376 * 135.94894 * 5 2 1 8 8 C 1.47077 * 120.87780 * 5.19081 * 7 5 2 9 9 C 1.53693 * 108.28023 * 128.75563 * 8 7 5 10 10 N 1.46897 * 109.25519 * 54.07738 * 9 8 7 11 11 C 1.46907 * 110.99816 * 172.61002 * 10 9 8 12 12 C 1.50696 * 109.47045 * 294.30592 * 11 10 9 13 13 H 1.07998 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99733 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00330 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99921 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47435 * 89.99616 * 16 14 12 18 18 H 1.48504 * 109.47103 * 209.99815 * 16 14 12 19 19 H 1.48504 * 109.47194 * 329.99367 * 16 14 12 20 20 C 1.46902 * 111.27114 * 296.75908 * 10 9 8 21 21 C 1.47071 * 120.88334 * 185.46767 * 7 5 2 22 22 H 1.08996 * 109.47160 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46828 * 300.00343 * 1 2 3 24 24 H 1.09006 * 109.46777 * 60.00035 * 1 2 3 25 25 H 1.09004 * 109.62938 * 248.52439 * 8 7 5 26 26 H 1.09007 * 109.63103 * 9.09752 * 8 7 5 27 27 H 1.09002 * 109.64349 * 294.07565 * 9 8 7 28 28 H 1.08998 * 109.42166 * 173.94765 * 9 8 7 29 29 H 1.09004 * 109.46683 * 54.30340 * 11 10 9 30 30 H 1.08995 * 109.47164 * 174.30113 * 11 10 9 31 31 H 0.97006 * 120.00781 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.49249 * 303.14477 * 20 10 9 33 33 H 1.08994 * 109.51225 * 183.07734 * 20 10 9 34 34 H 1.09009 * 109.63086 * 350.89552 * 21 7 5 35 35 H 1.08991 * 109.63253 * 111.47709 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 17 2.1310 -0.8499 1.4722 5 6 2.0324 -0.7104 -1.2304 6 8 1.5228 -1.7546 -1.5783 7 7 3.0479 -0.1855 -1.9443 8 6 3.7546 1.0176 -1.4794 9 6 5.2636 0.7264 -1.4943 10 7 5.6529 0.2552 -2.8301 11 6 7.1126 0.1321 -2.9402 12 6 7.7412 1.4978 -2.8362 13 1 7.1186 2.3700 -2.7023 14 6 9.1110 1.6338 -2.9132 15 7 9.8692 0.5718 -3.0769 16 14 9.8902 3.3267 -2.7851 17 1 10.1893 3.6276 -1.3620 18 1 11.1494 3.3529 -3.5719 19 1 8.9513 4.3455 -3.3197 20 6 4.9911 -1.0137 -3.1615 21 6 3.4749 -0.7972 -3.2118 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 3.5332 1.8523 -2.1446 26 1 3.4370 1.2599 -0.4652 27 1 5.4960 -0.0410 -0.7559 28 1 5.8111 1.6383 -1.2563 29 1 7.4854 -0.5017 -2.1355 30 1 7.3682 -0.3133 -3.9016 31 1 10.8330 0.6674 -3.1314 32 1 5.2273 -1.7569 -2.3999 33 1 5.3409 -1.3641 -4.1325 34 1 2.9723 -1.7555 -3.3436 35 1 3.2271 -0.1337 -4.0403 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168039094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:58 Heat of formation + Delta-G solvation = -58.038856 kcal Electronic energy + Delta-G solvation = -17891.800495 eV Core-core repulsion = 14949.800310 eV Total energy + Delta-G solvation = -2942.000185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.37771 -39.10821 -37.20936 -36.05910 -34.47848 -33.51274 -32.01215 -30.04691 -27.53107 -25.64236 -24.61826 -23.59559 -21.91500 -19.91875 -18.72959 -18.49102 -17.25123 -16.72991 -16.69509 -16.04342 -15.90748 -15.35540 -15.20848 -15.07122 -14.52296 -14.17864 -13.80064 -13.57169 -13.20733 -13.01329 -12.84187 -12.67762 -12.58994 -12.39019 -12.31155 -12.21356 -12.08463 -11.79402 -11.59165 -11.28279 -10.78858 -10.61565 -9.86655 -9.09826 -8.19597 -6.30216 0.55219 1.44632 1.45839 1.57195 1.71859 1.88114 2.41841 3.10866 3.13386 3.20628 3.64458 3.75737 3.95194 4.02618 4.20271 4.24649 4.40530 4.50394 4.66372 4.68272 4.75026 4.80963 4.92285 4.98820 5.13667 5.17906 5.20603 5.35906 5.64112 6.01647 6.14956 6.30143 6.53510 6.85730 6.88726 7.40124 8.91922 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.032068 B = 0.004764 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.934479 B = 5876.522500 C = 6236.411749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 H 0.150 0.850 4 Cl -0.159 7.159 5 C 0.509 3.491 6 O -0.564 6.564 7 N -0.604 5.604 8 C 0.114 3.886 9 C 0.049 3.951 10 N -0.536 5.536 11 C 0.207 3.793 12 C -0.520 4.520 13 H 0.072 0.928 14 C 0.000 4.000 15 N -0.938 5.938 16 Si 0.971 3.029 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.259 1.259 20 C 0.042 3.958 21 C 0.127 3.873 22 H 0.062 0.938 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.011 0.989 28 H 0.090 0.910 29 H -0.043 1.043 30 H 0.005 0.995 31 H 0.264 0.736 32 H 0.011 0.989 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.645 3.248 5.837 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 H 0.167 0.833 4 Cl -0.133 7.133 5 C 0.297 3.703 6 O -0.443 6.443 7 N -0.337 5.337 8 C -0.008 4.008 9 C -0.080 4.080 10 N -0.260 5.260 11 C 0.081 3.919 12 C -0.559 4.559 13 H 0.090 0.910 14 C -0.197 4.197 15 N -0.578 5.578 16 Si 0.796 3.204 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.183 1.183 20 C -0.087 4.087 21 C 0.004 3.996 22 H 0.081 0.919 23 H 0.120 0.880 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.131 0.869 27 H 0.030 0.970 28 H 0.109 0.891 29 H -0.026 1.026 30 H 0.023 0.977 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.847 2.929 5.396 18.874 hybrid contribution 1.541 -0.488 0.554 1.709 sum -16.306 2.441 5.951 17.529 Atomic orbital electron populations 1.22004 0.88451 1.04261 1.05247 1.24418 1.00306 0.99410 0.83161 0.83297 1.98762 1.90237 1.82086 1.42216 1.20794 0.79642 0.85034 0.84832 1.90686 1.58936 1.23733 1.70944 1.48358 1.32651 1.29442 1.23204 1.22267 0.89759 0.86708 1.02042 1.22451 0.95880 1.00654 0.89020 1.62039 1.09001 1.27515 1.27490 1.19386 0.82614 0.96151 0.93721 1.21454 0.91695 0.93568 1.49137 0.90954 1.25945 0.97965 1.01036 0.94801 1.70098 1.05302 1.31258 1.51175 0.85353 0.77667 0.79216 0.78209 1.19866 1.21291 1.18341 1.22445 0.94774 0.90820 1.00695 1.21682 0.92576 0.99792 0.85535 0.91865 0.88049 0.89208 0.88223 0.86859 0.97043 0.89149 1.02559 0.97683 0.92774 0.97105 0.89866 0.89154 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.08 71.98 0.65 -1.44 16 2 C -0.03 -0.50 3.18 29.85 0.09 -0.41 16 3 H 0.15 1.92 5.76 -2.39 -0.01 1.90 16 4 Cl -0.16 -3.65 28.59 -2.72 -0.08 -3.73 16 5 C 0.51 13.55 6.71 87.66 0.59 14.14 16 6 O -0.56 -18.86 15.94 -3.04 -0.05 -18.90 16 7 N -0.60 -16.20 3.00 -817.06 -2.45 -18.65 16 8 C 0.11 2.74 6.35 86.50 0.55 3.29 16 9 C 0.05 1.69 5.47 86.54 0.47 2.17 16 10 N -0.54 -21.83 4.62 -898.88 -4.15 -25.99 16 11 C 0.21 10.77 4.72 85.55 0.40 11.18 16 12 C -0.52 -28.08 8.41 25.60 0.22 -27.86 16 13 H 0.07 3.71 7.13 -2.91 -0.02 3.68 16 14 C 0.00 0.02 5.46 84.66 0.46 0.49 16 15 N -0.94 -55.73 13.28 21.45 0.28 -55.44 16 16 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 20 C 0.04 1.49 5.62 86.38 0.49 1.97 16 21 C 0.13 3.65 6.61 86.35 0.57 4.22 16 22 H 0.06 1.18 7.90 -2.39 -0.02 1.16 16 23 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 26 H 0.11 1.99 5.55 -2.38 -0.01 1.97 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.09 3.29 6.67 -2.39 -0.02 3.28 16 29 H -0.04 -2.50 8.12 -2.38 -0.02 -2.52 16 30 H 0.01 0.29 7.97 -2.39 -0.02 0.27 16 31 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.08 2.91 7.99 -2.39 -0.02 2.89 16 34 H 0.09 2.63 7.04 -2.38 -0.02 2.61 16 35 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -67.65 299.20 1.15 -66.49 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.08 Total: 3.88 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 4.50 Total: 7.75 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -6.32 Total: -100.08 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.90 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: -3.65 SS G_CDS: -0.08 Total: -3.73 kcal Total: -67.65 1.15 -66.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168039094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.455 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds