Wall clock time and date at job start Mon Mar 30 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00006 * 179.97438 * 10 9 7 12 12 O 1.21559 * 119.99662 * 0.02562 * 11 10 9 13 13 C 1.47837 * 120.00306 * 179.97438 * 11 10 9 14 14 C 1.39600 * 120.22318 * 0.02562 * 13 11 10 15 15 C 1.37735 * 119.68191 * 180.02562 * 14 13 11 16 16 C 1.38849 * 120.55218 * 0.02562 * 15 14 13 17 17 C 1.38000 * 120.07172 * 359.78373 * 16 15 14 18 18 C 1.38473 * 119.86694 * 0.04359 * 17 16 15 19 19 C 1.50648 * 121.83240 * 180.53088 * 17 16 15 20 20 N 1.46622 * 110.49611 * 342.18433 * 19 17 16 21 21 C 1.47151 * 110.24343 * 52.62772 * 20 19 17 22 22 C 1.50766 * 118.33970 * 179.51808 * 16 15 14 23 23 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 0.96998 * 120.00192 * 0.02562 * 10 9 7 27 27 H 1.07999 * 120.15723 * 0.05093 * 14 13 11 28 28 H 1.07993 * 119.72446 * 180.02562 * 15 14 13 29 29 H 1.08004 * 119.86454 * 180.02562 * 18 17 16 30 30 H 1.09008 * 109.26601 * 102.44028 * 19 17 16 31 31 H 1.08990 * 109.27560 * 221.91465 * 19 17 16 32 32 H 1.00897 * 110.99657 * 289.21734 * 20 19 17 33 33 H 1.09010 * 109.62765 * 48.43452 * 21 20 19 34 34 H 1.08999 * 109.63041 * 168.81188 * 21 20 19 35 35 H 1.08998 * 109.38456 * 283.29896 * 22 16 15 36 36 H 1.09005 * 109.38400 * 42.98126 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 5.3250 -2.8214 0.0009 12 8 6.1149 -1.8974 0.0014 13 6 5.8179 -4.2152 0.0014 14 6 4.9149 -5.2798 0.0013 15 6 5.3863 -6.5740 0.0023 16 6 6.7514 -6.8279 0.0038 17 6 7.6496 -5.7803 -0.0001 18 6 7.1868 -4.4752 -0.0046 19 6 9.1384 -6.0101 -0.0104 20 7 9.4491 -7.3815 0.4050 21 6 8.6810 -8.3439 -0.4007 22 6 7.2124 -8.2633 0.0160 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6803 -0.8889 25 1 3.8746 -0.6798 0.8911 26 1 3.3696 -3.3124 0.0002 27 1 3.8518 -5.0896 0.0001 28 1 4.6884 -7.3981 0.0018 29 1 7.8898 -3.6553 -0.0081 30 1 9.5210 -5.8439 -1.0176 31 1 9.6154 -5.3098 0.6750 32 1 9.2703 -7.5103 1.3896 33 1 8.7759 -8.0947 -1.4577 34 1 9.0592 -9.3513 -0.2267 35 1 7.0983 -8.6714 1.0202 36 1 6.6064 -8.8438 -0.6798 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211896344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:43 Heat of formation + Delta-G solvation = -19.704510 kcal Electronic energy + Delta-G solvation = -18493.844687 eV Core-core repulsion = 15555.939654 eV Total energy + Delta-G solvation = -2937.905034 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44771 -38.83788 -36.44492 -34.43480 -32.83220 -32.47081 -31.02950 -29.40245 -27.92042 -24.69648 -24.10567 -22.60537 -21.84885 -21.02581 -19.54451 -17.82295 -16.66609 -16.36180 -15.84561 -15.12569 -14.96520 -14.81707 -14.66938 -14.49396 -13.99563 -13.73300 -13.52464 -13.10418 -12.72910 -12.48578 -12.36655 -12.24906 -11.90928 -11.61449 -11.36035 -11.05596 -11.03267 -10.79304 -9.99865 -9.53971 -9.41989 -8.89080 -8.87026 -8.81271 -8.70571 -8.18395 -6.24202 -4.26952 0.87431 1.26331 3.08643 3.25251 3.31903 3.40297 3.86000 3.95557 3.99790 4.31205 4.41479 4.59004 4.63863 4.76888 4.89720 5.10705 5.11173 5.23243 5.25980 5.26793 5.44354 5.51517 5.53871 5.65699 5.85385 5.88734 6.23070 6.34354 6.37623 6.59531 6.76067 6.83107 6.99902 7.02893 7.15456 7.34034 8.08612 8.45042 8.70478 8.84440 9.35424 10.87669 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.047438 B = 0.003867 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.108512 B = 7239.046183 C = 7776.645906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.220 3.780 10 N -0.698 5.698 11 C 0.541 3.459 12 O -0.554 6.554 13 C -0.122 4.122 14 C -0.085 4.085 15 C -0.125 4.125 16 C -0.066 4.066 17 C -0.131 4.131 18 C -0.057 4.057 19 C 0.096 3.904 20 N -0.679 5.679 21 C 0.053 3.947 22 C -0.120 4.120 23 H 0.268 0.732 24 H 0.023 0.977 25 H 0.028 0.972 26 H 0.396 0.604 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.343 0.657 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.738 -17.372 0.234 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.097 0.903 9 C 0.098 3.902 10 N -0.346 5.346 11 C 0.327 3.673 12 O -0.435 6.435 13 C -0.126 4.126 14 C -0.104 4.104 15 C -0.143 4.143 16 C -0.067 4.067 17 C -0.132 4.132 18 C -0.076 4.076 19 C -0.034 4.034 20 N -0.306 5.306 21 C -0.076 4.076 22 C -0.158 4.158 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.231 0.769 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.154 0.846 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.688 -16.609 -0.152 22.847 hybrid contribution -1.244 0.723 0.331 1.476 sum 14.444 -15.886 0.178 21.472 Atomic orbital electron populations 1.69877 1.06212 1.27487 1.49295 1.24788 0.94803 0.99191 0.93783 0.86811 0.80589 0.83174 0.79105 1.19788 1.20834 1.18470 1.21072 0.88414 0.95279 1.53544 0.90253 1.19547 0.95349 0.78360 0.96990 1.46143 1.05480 1.11259 1.71689 1.18284 0.83281 0.88009 0.77740 1.90717 1.55638 1.45629 1.51514 1.20148 0.94364 0.93673 1.04375 1.21372 0.99758 0.92186 0.97092 1.21010 0.94738 0.96734 1.01857 1.19706 0.93210 0.94778 0.98997 1.20399 0.97357 0.92755 1.02727 1.21195 0.94738 0.96234 0.95443 1.20967 0.89222 0.90528 1.02646 1.61005 1.57693 1.03097 1.08822 1.22097 0.89923 0.96905 0.98687 1.21240 0.98766 0.93039 1.02776 0.92208 0.95921 0.95457 0.76917 0.85122 0.85610 0.84641 0.89431 0.89354 0.83936 0.90516 0.89972 0.90304 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.55 -15.02 9.83 -34.44 -0.34 -15.36 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.47 4.50 -5.19 -0.02 5.45 16 10 N -0.70 -14.64 5.50 -62.43 -0.34 -14.98 16 11 C 0.54 10.97 7.77 -12.33 -0.10 10.87 16 12 O -0.55 -13.04 16.34 5.31 0.09 -12.95 16 13 C -0.12 -1.96 5.87 -105.05 -0.62 -2.58 16 14 C -0.09 -1.15 9.54 -39.26 -0.37 -1.52 16 15 C -0.13 -1.41 9.63 -39.54 -0.38 -1.79 16 16 C -0.07 -0.71 5.78 -104.45 -0.60 -1.31 16 17 C -0.13 -1.51 5.79 -104.65 -0.61 -2.12 16 18 C -0.06 -0.81 9.20 -39.08 -0.36 -1.16 16 19 C 0.10 0.90 6.33 -5.15 -0.03 0.86 16 20 N -0.68 -5.59 6.96 -115.18 -0.80 -6.39 16 21 C 0.05 0.38 6.62 -3.75 -0.02 0.36 16 22 C -0.12 -0.90 5.82 -27.92 -0.16 -1.07 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 25 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 26 H 0.40 7.30 6.37 -40.82 -0.26 7.04 16 27 H 0.13 1.61 6.42 -52.49 -0.34 1.28 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.14 1.94 7.64 -52.48 -0.40 1.54 16 30 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.09 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.34 2.55 8.74 -39.29 -0.34 2.20 16 33 H 0.08 0.59 8.05 -51.92 -0.42 0.17 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -32.24 300.02 -8.79 -41.03 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.64 Total: 4.90 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.72 Total: -7.24 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.37 Total: -47.05 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.24 -8.79 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211896344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.321 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds