Wall clock time and date at job start Mon Mar 30 2020 05:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00006 * 179.97438 * 10 9 7 12 12 O 1.21559 * 119.99662 * 0.02562 * 11 10 9 13 13 C 1.47837 * 120.00306 * 179.97438 * 11 10 9 14 14 C 1.39600 * 120.22318 * 0.02562 * 13 11 10 15 15 C 1.37735 * 119.68191 * 180.02562 * 14 13 11 16 16 C 1.38849 * 120.55218 * 0.02562 * 15 14 13 17 17 C 1.38000 * 120.07172 * 359.78373 * 16 15 14 18 18 C 1.38473 * 119.86694 * 0.04359 * 17 16 15 19 19 C 1.50648 * 121.83240 * 180.53088 * 17 16 15 20 20 N 1.46622 * 110.49611 * 342.18433 * 19 17 16 21 21 C 1.47151 * 110.24343 * 52.62772 * 20 19 17 22 22 C 1.50766 * 118.33970 * 179.51808 * 16 15 14 23 23 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 0.96998 * 120.00192 * 0.02562 * 10 9 7 27 27 H 1.07999 * 120.15723 * 0.05093 * 14 13 11 28 28 H 1.07993 * 119.72446 * 180.02562 * 15 14 13 29 29 H 1.08004 * 119.86454 * 180.02562 * 18 17 16 30 30 H 1.09008 * 109.26601 * 102.44028 * 19 17 16 31 31 H 1.08990 * 109.27560 * 221.91465 * 19 17 16 32 32 H 1.00897 * 110.99657 * 289.21734 * 20 19 17 33 33 H 1.09010 * 109.62765 * 48.43452 * 21 20 19 34 34 H 1.08999 * 109.63041 * 168.81188 * 21 20 19 35 35 H 1.08998 * 109.38456 * 283.29896 * 22 16 15 36 36 H 1.09005 * 109.38400 * 42.98126 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 5.3250 -2.8214 0.0009 12 8 6.1149 -1.8974 0.0014 13 6 5.8179 -4.2152 0.0014 14 6 4.9149 -5.2798 0.0013 15 6 5.3863 -6.5740 0.0023 16 6 6.7514 -6.8279 0.0038 17 6 7.6496 -5.7803 -0.0001 18 6 7.1868 -4.4752 -0.0046 19 6 9.1384 -6.0101 -0.0104 20 7 9.4491 -7.3815 0.4050 21 6 8.6810 -8.3439 -0.4007 22 6 7.2124 -8.2633 0.0160 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6803 -0.8889 25 1 3.8746 -0.6798 0.8911 26 1 3.3696 -3.3124 0.0002 27 1 3.8518 -5.0896 0.0001 28 1 4.6884 -7.3981 0.0018 29 1 7.8898 -3.6553 -0.0081 30 1 9.5210 -5.8439 -1.0176 31 1 9.6154 -5.3098 0.6750 32 1 9.2703 -7.5103 1.3896 33 1 8.7759 -8.0947 -1.4577 34 1 9.0592 -9.3513 -0.2267 35 1 7.0983 -8.6714 1.0202 36 1 6.6064 -8.8438 -0.6798 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211896344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:42 Heat of formation + Delta-G solvation = -43.373395 kcal Electronic energy + Delta-G solvation = -18494.871047 eV Core-core repulsion = 15555.939654 eV Total energy + Delta-G solvation = -2938.931394 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51039 -40.22945 -37.35930 -36.30985 -34.51067 -33.67150 -32.12598 -30.36143 -29.70499 -25.77429 -25.05450 -23.95177 -23.10655 -22.27585 -20.84807 -19.38165 -18.29382 -17.44695 -17.15782 -16.47634 -16.32243 -16.05938 -15.78304 -15.63932 -15.27820 -14.72439 -14.68696 -14.44758 -14.32481 -14.17545 -13.45484 -13.26049 -13.09811 -12.76341 -12.62383 -12.52410 -12.23170 -11.95884 -11.78403 -11.70296 -11.06233 -10.95646 -10.13541 -9.85754 -9.65151 -9.48116 -8.43593 -6.51422 -0.22281 0.28677 1.30746 1.32788 1.45581 1.77897 2.24911 2.31167 2.75837 2.91875 3.33707 3.59782 3.69480 3.80541 3.90276 4.05690 4.21668 4.32648 4.41852 4.52400 4.62628 4.71241 4.86442 4.89778 4.94511 4.95260 4.99431 5.09864 5.18732 5.28164 5.31851 5.39034 5.47755 5.86629 5.94920 6.03785 6.41965 6.47672 6.70820 7.08877 7.25265 8.71044 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.047438 B = 0.003867 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.108512 B = 7239.046183 C = 7776.645906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.231 3.769 10 N -0.698 5.698 11 C 0.541 3.459 12 O -0.594 6.594 13 C -0.151 4.151 14 C -0.090 4.090 15 C -0.122 4.122 16 C -0.057 4.057 17 C -0.129 4.129 18 C -0.066 4.066 19 C 0.099 3.901 20 N -0.681 5.681 21 C 0.053 3.947 22 C -0.116 4.116 23 H 0.274 0.726 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.407 0.593 27 H 0.136 0.864 28 H 0.158 0.842 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.349 0.651 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.972 -19.591 0.275 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.108 3.892 10 N -0.348 5.348 11 C 0.330 3.670 12 O -0.478 6.478 13 C -0.154 4.154 14 C -0.108 4.108 15 C -0.140 4.140 16 C -0.058 4.058 17 C -0.131 4.131 18 C -0.086 4.086 19 C -0.031 4.031 20 N -0.308 5.308 21 C -0.077 4.077 22 C -0.154 4.154 23 H 0.083 0.917 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.244 0.756 27 H 0.154 0.846 28 H 0.175 0.825 29 H 0.142 0.858 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.167 0.833 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.918 -18.869 -0.110 25.343 hybrid contribution -1.595 1.237 0.319 2.044 sum 15.323 -17.632 0.209 23.361 Atomic orbital electron populations 1.69971 1.07634 1.28736 1.50373 1.25583 0.95571 1.02648 0.93408 0.85858 0.79236 0.79274 0.79555 1.18872 1.19527 1.18589 1.21246 0.89668 0.94740 1.53107 0.92196 1.19169 0.93649 0.80515 0.95908 1.45971 1.06378 1.10090 1.72314 1.18934 0.82348 0.89677 0.76052 1.90676 1.56377 1.47422 1.53286 1.19846 0.95572 0.91540 1.08432 1.21487 0.99678 0.92595 0.97069 1.21365 0.95686 0.96447 1.00464 1.20197 0.92903 0.96450 0.96232 1.20655 0.98913 0.91758 1.01809 1.21225 0.93854 0.97410 0.96094 1.20961 0.87613 0.91569 1.02957 1.61019 1.57900 1.02452 1.09437 1.22185 0.89649 0.97600 0.98220 1.21330 0.99121 0.90678 1.04279 0.91707 0.96817 0.96694 0.75576 0.84615 0.82479 0.85752 0.89254 0.89032 0.83265 0.91022 0.87869 0.88614 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.96 21.44 0.30 -55.37 16 2 C 0.03 1.63 5.47 84.65 0.46 2.10 16 3 Si 0.94 44.50 27.47 68.60 1.88 46.39 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -12.39 6.54 99.48 0.65 -11.74 16 7 C -0.55 -30.91 9.83 25.60 0.25 -30.66 16 8 H 0.06 3.52 7.84 -2.91 -0.02 3.49 16 9 C 0.23 11.76 4.50 85.64 0.38 12.15 16 10 N -0.70 -30.04 5.50 -469.71 -2.58 -32.62 16 11 C 0.54 22.57 7.77 86.78 0.67 23.25 16 12 O -0.59 -28.96 16.34 -3.90 -0.06 -29.03 16 13 C -0.15 -4.87 5.87 -20.14 -0.12 -4.99 16 14 C -0.09 -2.31 9.54 22.48 0.21 -2.10 16 15 C -0.12 -2.39 9.63 22.30 0.21 -2.17 16 16 C -0.06 -1.05 5.78 -19.75 -0.11 -1.16 16 17 C -0.13 -2.78 5.79 -19.88 -0.12 -2.90 16 18 C -0.07 -1.89 9.20 22.59 0.21 -1.68 16 19 C 0.10 1.67 6.33 85.59 0.54 2.21 16 20 N -0.68 -9.22 6.96 -518.31 -3.61 -12.83 16 21 C 0.05 0.56 6.62 86.21 0.57 1.13 16 22 C -0.12 -1.24 5.82 29.83 0.17 -1.07 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.01 0.73 7.57 -2.39 -0.02 0.71 16 25 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 26 H 0.41 15.36 6.37 -92.71 -0.59 14.77 16 27 H 0.14 3.25 6.42 -2.91 -0.02 3.23 16 28 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.12 3.72 7.64 -2.91 -0.02 3.70 16 30 H 0.09 1.49 8.14 -2.38 -0.02 1.48 16 31 H 0.09 1.48 8.13 -2.39 -0.02 1.46 16 32 H 0.35 4.10 8.74 -89.70 -0.78 3.32 16 33 H 0.07 0.86 8.05 -2.38 -0.02 0.85 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -70.34 300.02 -1.04 -71.38 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.32 Total: 17.97 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 3.35 Total: -5.89 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -5.89 Total: -100.82 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.06 Total: -29.03 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Total: -70.34 -1.04 -71.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211896344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.005 kcal (2) G-P(sol) polarization free energy of solvation -70.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds