Wall clock time and date at job start Mon Mar 30 2020 05:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00219 * 2 1 4 4 H 1.48502 * 109.47348 * 240.00452 * 3 2 1 5 5 H 1.48504 * 109.47396 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47541 * 120.00445 * 3 2 1 7 7 C 1.37879 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99896 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.38840 * 300.21048 * 9 7 2 11 11 N 1.46903 * 109.38768 * 59.99904 * 9 7 2 12 12 C 1.47190 * 110.17476 * 170.34963 * 11 9 7 13 13 C 1.52983 * 108.72897 * 291.00179 * 12 11 9 14 14 N 1.46010 * 110.04157 * 50.29389 * 13 12 11 15 15 C 1.46504 * 118.53502 * 161.81516 * 14 13 12 16 16 C 1.50700 * 109.47258 * 90.00053 * 15 14 13 17 17 C 1.38231 * 119.99825 * 269.86596 * 16 15 14 18 18 C 1.38243 * 120.00070 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99602 * 0.07188 * 18 17 16 20 20 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 120.00292 * 89.99734 * 16 15 14 22 22 C 1.33704 * 122.92770 * 342.09523 * 14 13 12 23 23 O 1.21283 * 118.62601 * 181.42712 * 22 14 13 24 24 H 0.97009 * 119.99871 * 359.97438 * 1 2 3 25 25 H 1.00899 * 110.99985 * 293.71899 * 11 9 7 26 26 H 1.08999 * 109.59245 * 171.23420 * 12 11 9 27 27 H 1.08996 * 109.59600 * 50.77587 * 12 11 9 28 28 H 1.08998 * 109.38078 * 290.11761 * 13 12 11 29 29 H 1.09007 * 109.37795 * 170.46913 * 13 12 11 30 30 H 1.08996 * 109.46999 * 329.99938 * 15 14 13 31 31 H 1.09002 * 109.46875 * 210.00020 * 15 14 13 32 32 H 1.08001 * 120.00367 * 0.10906 * 17 16 15 33 33 H 1.08000 * 119.99728 * 180.34119 * 18 17 16 34 34 H 1.08000 * 119.99297 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.00350 * 179.97438 * 20 19 18 36 36 H 1.08007 * 119.99474 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6224 -2.5540 0.8882 11 7 0.4066 -2.5747 -1.2003 12 6 -0.1580 -3.9268 -1.3393 13 6 0.9725 -4.8981 -1.6843 14 7 2.0808 -4.7286 -0.7490 15 6 3.0725 -5.8011 -0.6373 16 6 4.1853 -5.5612 -1.6248 17 6 4.1033 -6.0882 -2.9000 18 6 5.1243 -5.8686 -3.8057 19 6 6.2280 -5.1232 -3.4356 20 6 6.3105 -4.5970 -2.1600 21 6 5.2894 -4.8164 -1.2545 22 6 2.2279 -3.6406 0.0140 23 8 3.1928 -3.5699 0.7454 24 1 -0.4850 0.8401 0.0004 25 1 -0.3236 -1.8789 -1.1729 26 1 -0.9009 -3.9325 -2.1369 27 1 -0.6238 -4.2268 -0.4007 28 1 1.3215 -4.7015 -2.6980 29 1 0.6013 -5.9213 -1.6237 30 1 2.5976 -6.7587 -0.8506 31 1 3.4803 -5.8149 0.3735 32 1 3.2409 -6.6705 -3.1893 33 1 5.0576 -6.2758 -4.8038 34 1 7.0259 -4.9520 -4.1431 35 1 7.1730 -4.0149 -1.8707 36 1 5.3542 -4.4060 -0.2575 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222428445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:12 Heat of formation + Delta-G solvation = -0.274799 kcal Electronic energy + Delta-G solvation = -19626.514894 eV Core-core repulsion = 16689.452396 eV Total energy + Delta-G solvation = -2937.062498 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82468 -38.54032 -35.70178 -34.64271 -32.41425 -30.86230 -30.64491 -28.93530 -26.66598 -25.54078 -22.77817 -22.48895 -21.95619 -20.93736 -17.73570 -16.80661 -16.64114 -16.01344 -15.72131 -15.18859 -14.76824 -14.55966 -14.33567 -13.71400 -13.56001 -13.16947 -13.03416 -12.61162 -12.33003 -12.21941 -11.77014 -11.61942 -11.28525 -11.10815 -10.83474 -10.80097 -10.74451 -10.63614 -10.09802 -9.43993 -8.89567 -8.66939 -8.61388 -8.35836 -8.06496 -7.19003 -6.16670 -4.15359 1.54135 1.65872 3.34358 3.36330 3.40818 3.61541 3.73819 4.17729 4.42922 5.00189 5.03168 5.06855 5.19833 5.29349 5.41755 5.45100 5.52550 5.70684 5.73635 5.83122 5.90685 5.98821 6.04421 6.22949 6.30257 6.36999 6.40722 6.65732 6.75573 6.90769 6.99358 7.07820 7.25100 7.68856 7.85949 8.31871 8.35677 8.77450 8.90420 9.18221 9.50717 10.96172 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.006887 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.465821 B = 4064.810396 C = 4785.079763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.485 4.485 8 H 0.069 0.931 9 C 0.208 3.792 10 H 0.029 0.971 11 N -0.673 5.673 12 C 0.032 3.968 13 C 0.127 3.873 14 N -0.609 5.609 15 C 0.148 3.852 16 C -0.096 4.096 17 C -0.109 4.109 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.090 4.090 22 C 0.531 3.469 23 O -0.554 6.554 24 H 0.266 0.734 25 H 0.369 0.631 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 -12.077 -6.121 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.524 4.524 8 H 0.087 0.913 9 C 0.098 3.902 10 H 0.046 0.954 11 N -0.312 5.312 12 C -0.099 4.099 13 C 0.003 3.997 14 N -0.343 5.343 15 C 0.025 3.975 16 C -0.097 4.097 17 C -0.128 4.128 18 C -0.147 4.147 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.108 4.108 22 C 0.322 3.678 23 O -0.430 6.430 24 H 0.076 0.924 25 H 0.193 0.807 26 H 0.094 0.906 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.568 -11.989 -6.131 14.220 hybrid contribution -0.372 0.871 0.440 1.045 sum 4.196 -11.118 -5.690 13.175 Atomic orbital electron populations 1.69648 1.06025 1.27431 1.51284 1.24938 0.94998 0.99461 0.94015 0.86386 0.79371 0.81830 0.78843 1.20050 1.21243 1.20122 1.20831 0.93369 0.88228 1.49970 0.91326 1.19144 0.90207 0.91409 0.89486 0.95362 1.61339 1.25986 1.02065 1.41830 1.22221 0.95024 0.93068 0.99617 1.21421 0.86958 0.98116 0.93165 1.47668 1.25739 1.18806 1.42105 1.20298 0.88158 0.90269 0.98802 1.20299 0.95869 0.98171 0.95407 1.20984 0.98392 1.00225 0.93171 1.21033 0.94557 0.99934 0.99150 1.21088 0.98253 0.98469 0.96377 1.21162 0.99127 1.00023 0.93930 1.21292 0.92873 0.96200 1.00480 1.21210 0.87172 0.82042 0.77377 1.90523 1.31594 1.79318 1.41604 0.92429 0.80697 0.90642 0.95832 0.92093 0.92161 0.90668 0.89347 0.86533 0.86516 0.86590 0.86349 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 11.56 55.43 0.64 -24.26 16 2 C 0.07 1.86 5.38 -17.82 -0.10 1.77 16 3 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.48 -13.88 8.48 -34.44 -0.29 -14.17 16 8 H 0.07 2.06 7.41 -52.49 -0.39 1.67 16 9 C 0.21 5.38 2.59 -70.24 -0.18 5.20 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 11 N -0.67 -15.62 6.47 -109.22 -0.71 -16.33 16 12 C 0.03 0.56 6.63 -3.67 -0.02 0.54 16 13 C 0.13 2.06 6.62 -4.32 -0.03 2.03 16 14 N -0.61 -11.64 2.81 -175.96 -0.49 -12.13 16 15 C 0.15 2.38 5.40 -5.19 -0.03 2.35 16 16 C -0.10 -1.55 5.45 -104.63 -0.57 -2.12 16 17 C -0.11 -1.52 9.70 -39.58 -0.38 -1.91 16 18 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 19 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 20 C -0.12 -1.87 10.05 -39.59 -0.40 -2.26 16 21 C -0.09 -1.54 9.50 -39.58 -0.38 -1.92 16 22 C 0.53 12.69 7.10 -11.68 -0.08 12.61 16 23 O -0.55 -14.35 14.55 5.55 0.08 -14.27 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.37 9.05 6.96 -39.29 -0.27 8.77 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.76 7.98 -51.93 -0.41 0.34 16 30 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 31 H 0.09 1.52 7.20 -51.93 -0.37 1.14 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 2.43 7.27 -52.48 -0.38 2.05 16 LS Contribution 300.98 15.07 4.54 4.54 Total: -1.00 -30.91 300.98 -8.98 -39.89 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.75 Total: 7.78 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -3.26 Total: -2.01 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.56 Total: -52.72 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.08 Total: -14.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.91 -8.98 -39.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222428445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.610 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds