Wall clock time and date at job start Mon Mar 30 2020 05:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00219 * 2 1 4 4 H 1.48502 * 109.47348 * 240.00452 * 3 2 1 5 5 H 1.48504 * 109.47396 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47541 * 120.00445 * 3 2 1 7 7 C 1.37879 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99896 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.38840 * 300.21048 * 9 7 2 11 11 N 1.46903 * 109.38768 * 59.99904 * 9 7 2 12 12 C 1.47190 * 110.17476 * 170.34963 * 11 9 7 13 13 C 1.52983 * 108.72897 * 291.00179 * 12 11 9 14 14 N 1.46010 * 110.04157 * 50.29389 * 13 12 11 15 15 C 1.46504 * 118.53502 * 161.81516 * 14 13 12 16 16 C 1.50700 * 109.47258 * 90.00053 * 15 14 13 17 17 C 1.38231 * 119.99825 * 269.86596 * 16 15 14 18 18 C 1.38243 * 120.00070 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99602 * 0.07188 * 18 17 16 20 20 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 120.00292 * 89.99734 * 16 15 14 22 22 C 1.33704 * 122.92770 * 342.09523 * 14 13 12 23 23 O 1.21283 * 118.62601 * 181.42712 * 22 14 13 24 24 H 0.97009 * 119.99871 * 359.97438 * 1 2 3 25 25 H 1.00899 * 110.99985 * 293.71899 * 11 9 7 26 26 H 1.08999 * 109.59245 * 171.23420 * 12 11 9 27 27 H 1.08996 * 109.59600 * 50.77587 * 12 11 9 28 28 H 1.08998 * 109.38078 * 290.11761 * 13 12 11 29 29 H 1.09007 * 109.37795 * 170.46913 * 13 12 11 30 30 H 1.08996 * 109.46999 * 329.99938 * 15 14 13 31 31 H 1.09002 * 109.46875 * 210.00020 * 15 14 13 32 32 H 1.08001 * 120.00367 * 0.10906 * 17 16 15 33 33 H 1.08000 * 119.99728 * 180.34119 * 18 17 16 34 34 H 1.08000 * 119.99297 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.00350 * 179.97438 * 20 19 18 36 36 H 1.08007 * 119.99474 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6224 -2.5540 0.8882 11 7 0.4066 -2.5747 -1.2003 12 6 -0.1580 -3.9268 -1.3393 13 6 0.9725 -4.8981 -1.6843 14 7 2.0808 -4.7286 -0.7490 15 6 3.0725 -5.8011 -0.6373 16 6 4.1853 -5.5612 -1.6248 17 6 4.1033 -6.0882 -2.9000 18 6 5.1243 -5.8686 -3.8057 19 6 6.2280 -5.1232 -3.4356 20 6 6.3105 -4.5970 -2.1600 21 6 5.2894 -4.8164 -1.2545 22 6 2.2279 -3.6406 0.0140 23 8 3.1928 -3.5699 0.7454 24 1 -0.4850 0.8401 0.0004 25 1 -0.3236 -1.8789 -1.1729 26 1 -0.9009 -3.9325 -2.1369 27 1 -0.6238 -4.2268 -0.4007 28 1 1.3215 -4.7015 -2.6980 29 1 0.6013 -5.9213 -1.6237 30 1 2.5976 -6.7587 -0.8506 31 1 3.4803 -5.8149 0.3735 32 1 3.2409 -6.6705 -3.1893 33 1 5.0576 -6.2758 -4.8038 34 1 7.0259 -4.9520 -4.1431 35 1 7.1730 -4.0149 -1.8707 36 1 5.3542 -4.4060 -0.2575 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222428445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:12 Heat of formation + Delta-G solvation = -21.080588 kcal Electronic energy + Delta-G solvation = -19627.417101 eV Core-core repulsion = 16689.452396 eV Total energy + Delta-G solvation = -2937.964705 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.39133 -39.80149 -37.44946 -36.31585 -34.26211 -32.24763 -31.74475 -30.68115 -28.22996 -27.19879 -24.57071 -23.85824 -23.26015 -22.15847 -19.34391 -18.78288 -17.97314 -17.71108 -17.29766 -16.58464 -16.34610 -15.92862 -15.80275 -15.38806 -15.23111 -14.57846 -14.35806 -14.24983 -13.75950 -13.48047 -13.32905 -13.07126 -13.00166 -12.76649 -12.69185 -12.35168 -12.14830 -11.96554 -11.81659 -11.43538 -10.78671 -10.53528 -9.78121 -9.69278 -9.55015 -9.01946 -8.27837 -6.34997 0.41084 0.53893 1.38715 1.40968 1.48972 1.83265 2.23640 2.41995 2.99057 3.01475 3.74842 3.86401 3.92295 4.07980 4.11024 4.19030 4.31183 4.39395 4.46576 4.59095 4.62141 4.73662 4.80226 4.86423 4.88948 5.11675 5.14651 5.19156 5.52796 5.58234 5.63837 5.66809 5.75807 5.84340 6.16062 6.38200 6.62023 6.74424 6.90208 7.31578 7.42468 8.83428 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.006887 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.465821 B = 4064.810396 C = 4785.079763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.031 3.969 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.040 0.960 9 C 0.209 3.791 10 H -0.006 1.006 11 N -0.682 5.682 12 C 0.027 3.973 13 C 0.123 3.877 14 N -0.601 5.601 15 C 0.147 3.853 16 C -0.115 4.115 17 C -0.107 4.107 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.140 4.140 21 C -0.123 4.123 22 C 0.524 3.476 23 O -0.590 6.590 24 H 0.271 0.729 25 H 0.357 0.643 26 H 0.110 0.890 27 H 0.022 0.978 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 -13.704 -8.928 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.169 4.169 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.204 1.204 7 C -0.557 4.557 8 H 0.059 0.941 9 C 0.098 3.902 10 H 0.011 0.989 11 N -0.319 5.319 12 C -0.103 4.103 13 C 0.001 3.999 14 N -0.333 5.333 15 C 0.026 3.974 16 C -0.116 4.116 17 C -0.125 4.125 18 C -0.144 4.144 19 C -0.141 4.141 20 C -0.158 4.158 21 C -0.142 4.142 22 C 0.314 3.686 23 O -0.470 6.470 24 H 0.081 0.919 25 H 0.180 0.820 26 H 0.129 0.871 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.144 0.856 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.026 -13.665 -8.971 16.835 hybrid contribution -0.223 1.306 1.264 1.831 sum 3.803 -12.359 -7.708 15.054 Atomic orbital electron populations 1.69715 1.06650 1.28341 1.50592 1.25597 0.95949 1.02055 0.93335 0.85527 0.78470 0.78588 0.78490 1.19962 1.19371 1.20447 1.20916 0.92385 0.90527 1.51864 0.94129 1.18892 0.90484 0.91617 0.89227 0.98926 1.61188 1.25992 1.04729 1.39957 1.22462 0.96532 0.90438 1.00869 1.21730 0.85324 1.00405 0.92459 1.47636 1.26909 1.17767 1.40974 1.20505 0.88003 0.90873 0.98063 1.20347 0.95434 0.99108 0.96697 1.21330 0.99683 0.99609 0.91872 1.21514 0.93604 0.98745 1.00498 1.21479 0.99369 0.97491 0.95774 1.21359 0.98988 1.00672 0.94744 1.21247 0.95033 0.98148 0.99777 1.20853 0.86427 0.83064 0.78275 1.90497 1.32760 1.80289 1.43446 0.91943 0.82014 0.87146 0.95962 0.91280 0.86850 0.85970 0.91609 0.83324 0.82921 0.83655 0.85624 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.09 11.56 21.45 0.25 -50.84 16 2 C 0.03 1.76 5.38 84.66 0.46 2.21 16 3 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.52 -31.10 8.48 25.60 0.22 -30.88 16 8 H 0.04 2.59 7.41 -2.91 -0.02 2.57 16 9 C 0.21 11.29 2.59 43.28 0.11 11.40 16 10 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 11 N -0.68 -31.81 6.47 -499.45 -3.23 -35.04 16 12 C 0.03 0.91 6.63 86.24 0.57 1.48 16 13 C 0.12 3.55 6.62 86.47 0.57 4.12 16 14 N -0.60 -22.42 2.81 -829.60 -2.33 -24.75 16 15 C 0.15 4.57 5.40 85.63 0.46 5.03 16 16 C -0.11 -3.59 5.45 -19.87 -0.11 -3.69 16 17 C -0.11 -2.58 9.70 22.27 0.22 -2.36 16 18 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 19 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 20 C -0.14 -4.19 10.05 22.27 0.22 -3.97 16 21 C -0.12 -4.40 9.50 22.27 0.21 -4.18 16 22 C 0.52 26.00 7.10 87.68 0.62 26.62 16 23 O -0.59 -32.64 14.55 -3.04 -0.04 -32.69 16 24 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 25 H 0.36 17.77 6.96 -89.69 -0.62 17.14 16 26 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.11 2.18 7.98 -2.38 -0.02 2.16 16 30 H 0.12 2.60 7.86 -2.39 -0.02 2.58 16 31 H 0.07 2.33 7.20 -2.39 -0.02 2.31 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 33 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 35 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.09 3.95 7.27 -2.91 -0.02 3.92 16 Total: -1.00 -72.06 300.98 1.13 -70.93 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.46 Total: 24.37 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 4.00 Total: 0.48 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -5.31 Total: -110.64 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.04 Total: -32.69 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.06 1.13 -70.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222428445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.854 kcal (2) G-P(sol) polarization free energy of solvation -72.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds