Wall clock time and date at job start Mon Mar 30 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 C 1.54344 * 110.82503 * 267.96998 * 14 13 12 16 16 C 1.51370 * 105.16974 * 215.42836 * 15 14 13 17 17 C 1.38498 * 130.38909 * 197.19227 * 16 15 14 18 18 C 1.38099 * 120.21932 * 180.02562 * 17 16 15 19 19 C 1.38258 * 119.93078 * 359.97438 * 18 17 16 20 20 C 1.38100 * 119.93729 * 0.02562 * 19 18 17 21 21 C 1.38213 * 109.76131 * 17.18898 * 16 15 14 22 22 C 1.51366 * 109.75604 * 359.97438 * 21 16 15 23 23 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 25 25 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 26 26 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 27 27 H 1.00902 * 111.00178 * 56.04567 * 13 12 10 28 28 H 1.09004 * 110.72749 * 31.59541 * 14 13 12 29 29 H 1.08997 * 110.30411 * 334.35370 * 15 14 13 30 30 H 1.09005 * 110.30319 * 96.50345 * 15 14 13 31 31 H 1.08004 * 119.88840 * 359.97438 * 17 16 15 32 32 H 1.07996 * 120.03810 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.03104 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.89508 * 180.02562 * 20 19 18 35 35 H 1.09008 * 110.30340 * 223.88489 * 22 21 16 36 36 H 1.09001 * 110.38432 * 101.78139 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 1.4977 -7.2708 -0.0035 15 6 1.2880 -7.7802 1.4382 16 6 1.4323 -9.2845 1.3518 17 6 1.0440 -10.2757 2.2377 18 6 1.2836 -11.6036 1.9437 19 6 1.9127 -11.9457 0.7610 20 6 2.3007 -10.9588 -0.1237 21 6 2.0612 -9.6265 0.1694 22 6 2.3819 -8.3754 -0.6199 23 1 -0.4850 0.8401 -0.0004 24 1 0.3532 -2.3906 0.0016 25 1 0.6209 -4.9225 0.8949 26 1 0.6128 -4.9187 -0.8850 27 1 2.8365 -5.9142 0.7741 28 1 0.5479 -7.1950 -0.5329 29 1 2.0477 -7.3648 2.1004 30 1 0.2914 -7.5155 1.7917 31 1 0.5528 -10.0092 3.1620 32 1 0.9799 -12.3741 2.6368 33 1 2.1012 -12.9836 0.5296 34 1 2.7917 -11.2267 -1.0476 35 1 2.1326 -8.5173 -1.6715 36 1 3.4359 -8.1188 -0.5130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228318413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:59 Heat of formation + Delta-G solvation = -14.470154 kcal Electronic energy + Delta-G solvation = -18187.607034 eV Core-core repulsion = 15249.928979 eV Total energy + Delta-G solvation = -2937.678055 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24982 -38.27205 -36.60530 -34.01722 -33.05729 -31.51494 -31.20345 -28.54199 -27.32769 -25.98552 -23.91469 -22.10955 -21.01666 -20.66960 -19.25912 -17.89901 -16.45128 -16.22312 -15.82081 -15.23915 -14.89836 -14.78212 -14.43551 -13.96250 -13.44715 -13.42552 -13.16723 -12.88209 -12.76011 -12.34121 -12.09455 -11.69316 -11.46725 -11.31214 -11.26597 -11.07448 -11.00558 -10.87956 -10.43833 -10.20846 -9.49651 -8.92668 -8.59633 -8.45848 -8.05915 -7.95453 -6.41246 -3.82101 1.24420 1.27146 3.20661 3.26254 3.30742 3.64091 3.91028 4.04801 4.24659 4.38144 4.65022 4.88061 4.90362 5.00962 5.12039 5.16203 5.22739 5.29313 5.41172 5.52148 5.68269 5.69525 5.80050 5.81840 5.95575 6.01176 6.06438 6.12112 6.28169 6.32548 6.37489 6.57784 6.88962 7.23941 7.55520 7.65027 8.06582 8.61746 9.18240 9.54739 10.06246 10.76461 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.062247 B = 0.003141 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.711478 B = 8911.683578 C = 9097.364867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.658 5.658 14 C 0.090 3.910 15 C -0.115 4.115 16 C -0.092 4.092 17 C -0.109 4.109 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.109 4.109 21 C -0.091 4.091 22 C -0.074 4.074 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.352 0.648 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.439 -19.941 2.330 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.290 5.290 14 C -0.021 4.021 15 C -0.154 4.154 16 C -0.093 4.093 17 C -0.127 4.127 18 C -0.143 4.143 19 C -0.141 4.141 20 C -0.127 4.127 21 C -0.091 4.091 22 C -0.111 4.111 23 H 0.082 0.918 24 H 0.226 0.774 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.172 0.828 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.666 -19.713 1.636 19.792 hybrid contribution -0.627 0.719 0.996 1.379 sum -1.292 -18.993 2.633 19.218 Atomic orbital electron populations 1.69605 1.05941 1.28270 1.50552 1.25262 0.95634 0.99723 0.97303 0.85913 0.78761 0.80441 0.79087 1.19862 1.20980 1.19920 1.19659 0.93357 0.82258 1.47691 0.87970 1.41854 1.09202 1.04594 1.64345 1.19814 0.88388 0.84729 0.84503 1.90525 1.13766 1.87075 1.55423 1.21720 0.94416 0.90890 1.01257 1.60112 1.18018 0.99330 1.51495 1.22268 0.96973 0.89320 0.93524 1.21937 1.02718 0.91275 0.99433 1.20553 0.98453 0.95323 0.94944 1.20651 1.00636 0.92260 0.99163 1.21000 1.00063 0.95846 0.97414 1.21014 0.99510 0.99008 0.94597 1.20641 1.00708 0.91564 0.99819 1.20713 0.97867 0.94385 0.96130 1.21064 1.01413 0.89788 0.98860 0.91817 0.77445 0.93732 0.89495 0.82753 0.89255 0.89866 0.90683 0.86427 0.86134 0.86105 0.86257 0.90415 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 10 C 0.44 10.40 7.82 -10.98 -0.09 10.32 16 11 O -0.58 -15.90 15.78 5.54 0.09 -15.82 16 12 C 0.05 0.87 6.03 -4.98 -0.03 0.84 16 13 N -0.66 -10.56 5.97 -106.51 -0.64 -11.20 16 14 C 0.09 1.15 3.41 -66.31 -0.23 0.92 16 15 C -0.11 -1.34 6.45 -26.85 -0.17 -1.51 16 16 C -0.09 -1.08 6.14 -104.21 -0.64 -1.72 16 17 C -0.11 -1.15 10.04 -39.54 -0.40 -1.55 16 18 C -0.13 -1.19 10.05 -39.63 -0.40 -1.58 16 19 C -0.12 -1.16 10.05 -39.62 -0.40 -1.56 16 20 C -0.11 -1.13 10.04 -39.53 -0.40 -1.53 16 21 C -0.09 -1.06 6.14 -104.21 -0.64 -1.70 16 22 C -0.07 -0.88 6.49 -26.86 -0.17 -1.05 16 23 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 27 H 0.35 5.84 7.78 -39.29 -0.31 5.53 16 28 H 0.09 1.09 7.83 -51.93 -0.41 0.68 16 29 H 0.08 0.99 7.56 -51.93 -0.39 0.60 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 35 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -31.11 308.14 -8.80 -39.91 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -4.74 Total: 12.80 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.80 Total: -8.18 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.03 Total: -49.45 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.11 -8.80 -39.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228318413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.437 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds