Wall clock time and date at job start Mon Mar 30 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 C 1.54344 * 110.82503 * 267.96998 * 14 13 12 16 16 C 1.51370 * 105.16974 * 215.42836 * 15 14 13 17 17 C 1.38498 * 130.38909 * 197.19227 * 16 15 14 18 18 C 1.38099 * 120.21932 * 180.02562 * 17 16 15 19 19 C 1.38258 * 119.93078 * 359.97438 * 18 17 16 20 20 C 1.38100 * 119.93729 * 0.02562 * 19 18 17 21 21 C 1.38213 * 109.76131 * 17.18898 * 16 15 14 22 22 C 1.51366 * 109.75604 * 359.97438 * 21 16 15 23 23 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 25 25 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 26 26 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 27 27 H 1.00902 * 111.00178 * 56.04567 * 13 12 10 28 28 H 1.09004 * 110.72749 * 31.59541 * 14 13 12 29 29 H 1.08997 * 110.30411 * 334.35370 * 15 14 13 30 30 H 1.09005 * 110.30319 * 96.50345 * 15 14 13 31 31 H 1.08004 * 119.88840 * 359.97438 * 17 16 15 32 32 H 1.07996 * 120.03810 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.03104 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.89508 * 180.02562 * 20 19 18 35 35 H 1.09008 * 110.30340 * 223.88489 * 22 21 16 36 36 H 1.09001 * 110.38432 * 101.78139 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 1.4977 -7.2708 -0.0035 15 6 1.2880 -7.7802 1.4382 16 6 1.4323 -9.2845 1.3518 17 6 1.0440 -10.2757 2.2377 18 6 1.2836 -11.6036 1.9437 19 6 1.9127 -11.9457 0.7610 20 6 2.3007 -10.9588 -0.1237 21 6 2.0612 -9.6265 0.1694 22 6 2.3819 -8.3754 -0.6199 23 1 -0.4850 0.8401 -0.0004 24 1 0.3532 -2.3906 0.0016 25 1 0.6209 -4.9225 0.8949 26 1 0.6128 -4.9187 -0.8850 27 1 2.8365 -5.9142 0.7741 28 1 0.5479 -7.1950 -0.5329 29 1 2.0477 -7.3648 2.1004 30 1 0.2914 -7.5155 1.7917 31 1 0.5528 -10.0092 3.1620 32 1 0.9799 -12.3741 2.6368 33 1 2.1012 -12.9836 0.5296 34 1 2.7917 -11.2267 -1.0476 35 1 2.1326 -8.5173 -1.6715 36 1 3.4359 -8.1188 -0.5130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228318413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:59 Heat of formation + Delta-G solvation = -34.749539 kcal Electronic energy + Delta-G solvation = -18188.486414 eV Core-core repulsion = 15249.928979 eV Total energy + Delta-G solvation = -2938.557435 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12406 -40.08082 -37.69659 -35.97586 -34.28028 -33.23790 -32.30336 -29.67427 -28.19468 -27.56596 -25.60135 -22.97681 -21.81112 -21.66915 -21.07890 -19.92221 -17.81766 -17.28371 -17.06328 -16.47344 -16.35348 -15.97525 -15.75669 -15.65913 -15.04541 -14.35978 -14.13453 -13.94894 -13.79176 -13.72126 -13.50984 -13.19386 -12.99985 -12.84077 -12.43497 -12.32783 -12.12051 -12.08002 -11.99963 -11.64882 -11.50429 -10.35678 -10.02023 -9.70085 -9.40496 -9.33771 -8.46717 -5.95611 0.45974 0.49671 1.40007 1.41903 1.52897 2.04946 2.29078 2.83986 2.88229 3.20526 3.40041 3.55277 3.78541 4.11130 4.11611 4.17705 4.24071 4.33869 4.36597 4.49292 4.59843 4.68252 4.72182 4.76504 4.88765 4.96197 5.02756 5.22621 5.25766 5.40725 5.55575 5.63235 5.76406 5.90745 6.10901 6.14596 6.36432 6.59963 7.12276 7.55938 8.11263 8.70493 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.062247 B = 0.003141 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.711478 B = 8911.683578 C = 9097.364867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.092 3.908 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.070 4.070 23 H 0.278 0.722 24 H 0.397 0.603 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.346 0.654 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -21.143 2.579 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.511 6.511 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.018 4.018 15 C -0.148 4.148 16 C -0.111 4.111 17 C -0.138 4.138 18 C -0.145 4.145 19 C -0.143 4.143 20 C -0.137 4.137 21 C -0.108 4.108 22 C -0.107 4.107 23 H 0.087 0.913 24 H 0.231 0.769 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.166 0.834 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.151 0.849 35 H 0.102 0.898 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.480 -20.939 1.884 21.075 hybrid contribution -0.376 0.980 0.925 1.399 sum -1.856 -19.958 2.809 20.240 Atomic orbital electron populations 1.69665 1.06828 1.29399 1.50221 1.26041 0.96550 1.02411 0.96216 0.84992 0.77777 0.76634 0.78967 1.19732 1.19434 1.19665 1.19640 0.92726 0.84071 1.50083 0.90333 1.41920 1.09353 1.04689 1.64990 1.20883 0.88246 0.86183 0.82219 1.90493 1.15904 1.87979 1.56710 1.21584 0.94038 0.87892 1.03230 1.60114 1.18255 1.00267 1.51553 1.22297 0.97132 0.87771 0.94628 1.21825 1.02939 0.91618 0.98390 1.20650 0.99461 0.95373 0.95569 1.20914 1.00735 0.92633 0.99524 1.21366 0.99245 0.96014 0.97843 1.21380 0.98570 1.00121 0.94184 1.20917 1.00744 0.91276 1.00755 1.20769 0.98885 0.94800 0.96348 1.20980 1.00494 0.89950 0.99312 0.91256 0.76917 0.91303 0.87618 0.83422 0.88358 0.90548 0.89848 0.85158 0.83635 0.83533 0.84875 0.89836 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.51 5.29 -306.98 -1.62 -31.13 16 10 C 0.44 20.91 7.82 87.66 0.69 21.59 16 11 O -0.62 -34.92 15.78 -3.08 -0.05 -34.97 16 12 C 0.06 2.21 6.03 85.56 0.52 2.72 16 13 N -0.67 -21.30 5.97 -490.89 -2.93 -24.23 16 14 C 0.09 2.25 3.41 45.82 0.16 2.41 16 15 C -0.11 -2.44 6.45 30.52 0.20 -2.25 16 16 C -0.11 -2.46 6.14 -19.60 -0.12 -2.58 16 17 C -0.12 -2.32 10.04 22.30 0.22 -2.09 16 18 C -0.13 -2.08 10.05 22.24 0.22 -1.86 16 19 C -0.12 -2.03 10.05 22.24 0.22 -1.80 16 20 C -0.12 -2.27 10.04 22.30 0.22 -2.05 16 21 C -0.11 -2.41 6.14 -19.60 -0.12 -2.53 16 22 C -0.07 -1.63 6.49 30.51 0.20 -1.43 16 23 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 24 H 0.40 19.35 7.90 -92.71 -0.73 18.61 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.11 3.24 8.08 -2.39 -0.02 3.22 16 27 H 0.35 11.62 7.78 -89.69 -0.70 10.93 16 28 H 0.10 2.24 7.83 -2.39 -0.02 2.22 16 29 H 0.08 1.80 7.56 -2.39 -0.02 1.78 16 30 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 Total: -1.00 -66.96 308.14 1.07 -65.89 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: -0.33 Total: 37.30 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 3.69 Total: -8.44 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -4.27 Total: -104.86 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.05 Total: -34.97 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -66.96 1.07 -65.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228318413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.140 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds