Wall clock time and date at job start Mon Mar 30 2020 04:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37952 * 119.49723 * 2 1 4 4 C 1.40072 * 119.16315 * 179.77457 * 3 2 1 5 5 C 1.48002 * 120.88822 * 180.26347 * 4 3 2 6 6 O 1.21570 * 120.00100 * 222.55584 * 5 4 3 7 7 N 1.34774 * 120.00420 * 42.55738 * 5 4 3 8 8 C 1.36796 * 120.00275 * 182.11456 * 7 5 4 9 9 H 1.07998 * 120.00513 * 349.95953 * 8 7 5 10 10 C 1.39107 * 119.99779 * 169.94973 * 8 7 5 11 11 N 1.31327 * 119.99874 * 0.92961 * 10 8 7 12 12 Si 1.86794 * 119.99887 * 180.92175 * 10 8 7 13 13 H 1.48508 * 109.47051 * 60.00566 * 12 10 8 14 14 H 1.48498 * 109.47313 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47478 * 300.00927 * 12 10 8 16 16 C 1.46508 * 119.99467 * 2.11397 * 7 5 4 17 17 C 1.47203 * 109.47053 * 260.76533 * 16 7 5 18 18 N 4.50809 * 79.80845 * 7.59504 * 2 1 3 19 19 C 1.39630 * 118.22053 * 0.49313 * 4 3 2 20 20 C 1.39040 * 118.92626 * 359.75221 * 19 4 3 21 21 N 1.39027 * 119.64335 * 180.02562 * 20 19 4 22 22 N 1.31915 * 119.49782 * 180.27623 * 2 1 3 23 23 H 1.08997 * 109.46909 * 269.72965 * 1 2 3 24 24 H 1.09004 * 109.47179 * 29.72216 * 1 2 3 25 25 H 1.08997 * 109.47412 * 149.72097 * 1 2 3 26 26 H 1.07998 * 120.42029 * 0.02562 * 3 2 1 27 27 H 0.97002 * 119.99509 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47128 * 20.76832 * 16 7 5 29 29 H 1.08997 * 109.46868 * 140.76787 * 16 7 5 30 30 H 1.07997 * 120.54108 * 179.73001 * 19 4 3 31 31 H 0.97002 * 119.99981 * 179.97438 * 21 20 19 32 32 H 0.96996 * 119.99958 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2007 0.0000 4 6 3.5869 1.1925 0.0048 5 6 4.3541 2.4582 0.0108 6 8 5.3348 2.5779 -0.6975 7 7 3.9655 3.4781 0.8016 8 6 4.6488 4.6629 0.7751 9 1 5.5892 4.7323 0.2487 10 6 4.1322 5.7783 1.4262 11 7 2.9977 5.6892 2.0816 12 14 5.0525 7.4029 1.3685 13 1 5.1909 7.8435 -0.0429 14 1 4.2981 8.4266 2.1354 15 1 6.4003 7.2299 1.9674 16 6 2.8112 3.3178 1.6895 17 6 1.6249 3.9275 1.0669 18 7 0.7093 4.3980 0.5864 19 6 4.2400 -0.0416 -0.0011 20 6 3.4790 -1.2052 -0.0063 21 7 4.1138 -2.4420 -0.0117 22 7 2.1565 -1.1481 -0.0055 23 1 -0.3633 -0.0048 1.0276 24 1 -0.3634 0.8925 -0.5095 25 1 -0.3634 -0.8874 -0.5181 26 1 1.6449 2.1352 0.0004 27 1 2.6377 6.4670 2.5359 28 1 2.6278 2.2568 1.8590 29 1 3.0144 3.8080 2.6415 30 1 5.3188 -0.0916 -0.0021 31 1 3.5880 -3.2571 -0.0149 32 1 5.0826 -2.4899 -0.0123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228462064.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:32 Heat of formation + Delta-G solvation = 53.935680 kcal Electronic energy + Delta-G solvation = -19142.557587 eV Core-core repulsion = 16104.305488 eV Total energy + Delta-G solvation = -3038.252099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26187 -38.53242 -35.96658 -34.86355 -34.33887 -32.62163 -31.62898 -30.33956 -27.67212 -26.80371 -25.47805 -23.04079 -22.12225 -19.50243 -18.11180 -17.15185 -17.01094 -16.30808 -15.84333 -15.72301 -14.74923 -14.53188 -14.29612 -14.08166 -13.30315 -13.25168 -13.14855 -12.66693 -12.59870 -12.07460 -11.96328 -11.57318 -11.44299 -11.25908 -11.21863 -10.67171 -10.51157 -10.49781 -10.17178 -9.46784 -9.37611 -9.23926 -8.67820 -8.28670 -7.59682 -6.54846 -4.13061 1.37789 1.62653 3.06913 3.15162 3.17681 3.54240 3.58808 3.71863 3.98217 4.08792 4.22539 4.59454 4.79534 4.86708 5.17016 5.38306 5.43118 5.54887 5.67520 5.77924 5.78962 5.92083 6.08885 6.20443 6.26109 6.65181 6.77713 6.81114 7.31957 7.41691 7.58797 7.71829 8.16189 8.45303 8.78389 8.85632 9.04106 9.57767 10.40196 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.006791 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.662013 B = 4122.413185 C = 4934.232273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.169 3.831 3 C -0.214 4.214 4 C -0.009 4.009 5 C 0.481 3.519 6 O -0.570 6.570 7 N -0.428 5.428 8 C -0.298 4.298 9 H 0.114 0.886 10 C 0.029 3.971 11 N -0.888 5.888 12 Si 0.943 3.057 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.211 3.789 17 C 0.262 3.738 18 N -0.485 5.485 19 C -0.202 4.202 20 C 0.400 3.600 21 N -0.856 5.856 22 N -0.545 5.545 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.136 0.864 27 H 0.277 0.723 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.400 0.600 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -11.048 1.817 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.032 3.968 3 C -0.237 4.237 4 C -0.020 4.020 5 C 0.270 3.730 6 O -0.454 6.454 7 N -0.146 5.146 8 C -0.426 4.426 9 H 0.132 0.868 10 C -0.173 4.173 11 N -0.529 5.529 12 Si 0.769 3.231 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.195 1.195 16 C 0.085 3.915 17 C -0.055 4.055 18 N -0.167 5.167 19 C -0.228 4.228 20 C 0.163 3.837 21 N -0.400 5.400 22 N -0.265 5.265 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.154 0.846 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.164 0.836 30 H 0.153 0.847 31 H 0.229 0.771 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -2.378 -10.811 0.890 11.105 hybrid contribution 1.330 1.198 0.260 1.808 sum -1.048 -9.613 1.150 9.738 Atomic orbital electron populations 1.20705 0.88922 1.03229 1.03083 1.20716 0.96213 0.87034 0.92807 1.22140 0.93780 0.99650 1.08159 1.20317 0.93419 0.94394 0.93913 1.17850 0.87228 0.83830 0.84067 1.90646 1.28495 1.82471 1.43741 1.43545 1.24892 1.12101 1.34035 1.19900 1.05290 0.85156 1.32207 0.86818 1.25392 0.96085 1.00154 0.95651 1.69629 1.18607 1.31531 1.33107 0.85707 0.78925 0.79696 0.78804 1.19687 1.20684 1.19481 1.19361 0.78862 0.97388 0.95934 1.28958 0.93123 0.91054 0.92391 1.80915 1.13897 1.11924 1.09920 1.21309 1.00810 0.90454 1.10188 1.18116 0.88295 0.86194 0.91058 1.42093 1.09058 1.04406 1.84478 1.66769 1.07745 1.30206 1.21766 0.90341 0.90627 0.90736 0.84640 0.91139 0.90139 0.83642 0.84700 0.77103 0.76370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.16 36.00 0.37 -0.94 16 2 C 0.17 2.74 6.77 -82.66 -0.56 2.18 16 3 C -0.21 -3.90 7.26 -39.00 -0.28 -4.19 16 4 C -0.01 -0.18 5.01 -104.69 -0.52 -0.70 16 5 C 0.48 11.34 7.30 -12.26 -0.09 11.25 16 6 O -0.57 -15.14 16.57 5.30 0.09 -15.05 16 7 N -0.43 -10.15 2.61 -118.96 -0.31 -10.46 16 8 C -0.30 -7.61 9.47 -15.01 -0.14 -7.75 16 9 H 0.11 3.02 7.19 -52.49 -0.38 2.64 16 10 C 0.03 0.70 5.36 -17.45 -0.09 0.61 16 11 N -0.89 -21.43 7.93 55.50 0.44 -20.99 16 12 Si 0.94 19.69 29.55 -169.99 -5.02 14.66 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 16 C 0.21 4.39 4.77 -6.82 -0.03 4.36 16 17 C 0.26 5.84 10.46 -20.76 -0.22 5.62 16 18 N -0.49 -11.42 18.54 42.15 0.78 -10.64 16 19 C -0.20 -3.47 9.62 -38.77 -0.37 -3.84 16 20 C 0.40 6.10 7.74 -155.06 -1.20 4.90 16 21 N -0.86 -9.20 9.07 31.11 0.28 -8.92 16 22 N -0.54 -8.75 10.28 -8.72 -0.09 -8.84 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.14 2.62 4.55 -52.49 -0.24 2.38 16 27 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 28 H 0.08 1.45 5.44 -51.93 -0.28 1.16 16 29 H 0.15 3.09 6.20 -51.93 -0.32 2.77 16 30 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.40 3.65 8.95 -40.82 -0.37 3.29 16 32 H 0.41 3.41 8.82 -40.82 -0.36 3.05 16 LS Contribution 281.66 15.07 4.24 4.24 Total: -1.00 -30.23 281.66 -5.50 -35.73 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -2.77 Total: 8.77 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -3.15 Total: 11.49 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 1.10 Total: -59.85 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.09 Total: -15.05 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.23 -5.50 -35.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228462064.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.669 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds