Wall clock time and date at job start Mon Mar 30 2020 04:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37952 * 119.49723 * 2 1 4 4 C 1.40072 * 119.16315 * 179.77457 * 3 2 1 5 5 C 1.48002 * 120.88822 * 180.26347 * 4 3 2 6 6 O 1.21570 * 120.00100 * 222.55584 * 5 4 3 7 7 N 1.34774 * 120.00420 * 42.55738 * 5 4 3 8 8 C 1.36796 * 120.00275 * 182.11456 * 7 5 4 9 9 H 1.07998 * 120.00513 * 349.95953 * 8 7 5 10 10 C 1.39107 * 119.99779 * 169.94973 * 8 7 5 11 11 N 1.31327 * 119.99874 * 0.92961 * 10 8 7 12 12 Si 1.86794 * 119.99887 * 180.92175 * 10 8 7 13 13 H 1.48508 * 109.47051 * 60.00566 * 12 10 8 14 14 H 1.48498 * 109.47313 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47478 * 300.00927 * 12 10 8 16 16 C 1.46508 * 119.99467 * 2.11397 * 7 5 4 17 17 C 1.47203 * 109.47053 * 260.76533 * 16 7 5 18 18 N 4.50809 * 79.80845 * 7.59504 * 2 1 3 19 19 C 1.39630 * 118.22053 * 0.49313 * 4 3 2 20 20 C 1.39040 * 118.92626 * 359.75221 * 19 4 3 21 21 N 1.39027 * 119.64335 * 180.02562 * 20 19 4 22 22 N 1.31915 * 119.49782 * 180.27623 * 2 1 3 23 23 H 1.08997 * 109.46909 * 269.72965 * 1 2 3 24 24 H 1.09004 * 109.47179 * 29.72216 * 1 2 3 25 25 H 1.08997 * 109.47412 * 149.72097 * 1 2 3 26 26 H 1.07998 * 120.42029 * 0.02562 * 3 2 1 27 27 H 0.97002 * 119.99509 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47128 * 20.76832 * 16 7 5 29 29 H 1.08997 * 109.46868 * 140.76787 * 16 7 5 30 30 H 1.07997 * 120.54108 * 179.73001 * 19 4 3 31 31 H 0.97002 * 119.99981 * 179.97438 * 21 20 19 32 32 H 0.96996 * 119.99958 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2007 0.0000 4 6 3.5869 1.1925 0.0048 5 6 4.3541 2.4582 0.0108 6 8 5.3348 2.5779 -0.6975 7 7 3.9655 3.4781 0.8016 8 6 4.6488 4.6629 0.7751 9 1 5.5892 4.7323 0.2487 10 6 4.1322 5.7783 1.4262 11 7 2.9977 5.6892 2.0816 12 14 5.0525 7.4029 1.3685 13 1 5.1909 7.8435 -0.0429 14 1 4.2981 8.4266 2.1354 15 1 6.4003 7.2299 1.9674 16 6 2.8112 3.3178 1.6895 17 6 1.6249 3.9275 1.0669 18 7 0.7093 4.3980 0.5864 19 6 4.2400 -0.0416 -0.0011 20 6 3.4790 -1.2052 -0.0063 21 7 4.1138 -2.4420 -0.0117 22 7 2.1565 -1.1481 -0.0055 23 1 -0.3633 -0.0048 1.0276 24 1 -0.3634 0.8925 -0.5095 25 1 -0.3634 -0.8874 -0.5181 26 1 1.6449 2.1352 0.0004 27 1 2.6377 6.4670 2.5359 28 1 2.6278 2.2568 1.8590 29 1 3.0144 3.8080 2.6415 30 1 5.3188 -0.0916 -0.0021 31 1 3.5880 -3.2571 -0.0149 32 1 5.0826 -2.4899 -0.0123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228462064.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:32 Heat of formation + Delta-G solvation = 33.658290 kcal Electronic energy + Delta-G solvation = -19143.436880 eV Core-core repulsion = 16104.305488 eV Total energy + Delta-G solvation = -3039.131392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70665 -40.17167 -37.80840 -36.20562 -35.99467 -34.22370 -33.28222 -31.48817 -29.38999 -28.07754 -27.24019 -24.59878 -23.37172 -21.09707 -19.96606 -18.63631 -18.26272 -18.06561 -17.30223 -17.07439 -16.38196 -15.95391 -15.87019 -15.48673 -14.96437 -14.87481 -14.71763 -14.16182 -13.78122 -13.62314 -13.39392 -13.13716 -13.08222 -12.99620 -12.73102 -12.40550 -12.30871 -12.15733 -11.45359 -11.23534 -11.01178 -10.59847 -10.32161 -10.16536 -8.77248 -8.40231 -6.07700 -0.04280 0.31980 1.38234 1.42908 1.52264 1.83100 1.92178 2.23645 2.30706 2.56458 2.83273 2.95775 2.98880 3.55941 3.62490 3.79286 4.09806 4.16491 4.32587 4.50131 4.60578 4.66317 4.83037 4.99918 5.05388 5.15130 5.27732 5.37031 5.58788 5.86368 6.28832 6.37192 6.59775 6.95733 7.00212 7.18740 7.32311 7.72912 8.50798 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.006791 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.662013 B = 4122.413185 C = 4934.232273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.178 3.822 3 C -0.229 4.229 4 C -0.026 4.026 5 C 0.476 3.524 6 O -0.611 6.611 7 N -0.436 5.436 8 C -0.333 4.333 9 H 0.092 0.908 10 C 0.004 3.996 11 N -0.893 5.893 12 Si 0.997 3.003 13 H -0.281 1.281 14 H -0.273 1.273 15 H -0.260 1.260 16 C 0.219 3.781 17 C 0.272 3.728 18 N -0.508 5.508 19 C -0.208 4.208 20 C 0.409 3.591 21 N -0.832 5.832 22 N -0.546 5.546 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.122 0.878 27 H 0.279 0.721 28 H 0.111 0.889 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.413 0.587 32 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -12.582 2.419 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.040 3.960 3 C -0.253 4.253 4 C -0.037 4.037 5 C 0.267 3.733 6 O -0.498 6.498 7 N -0.154 5.154 8 C -0.460 4.460 9 H 0.110 0.890 10 C -0.197 4.197 11 N -0.533 5.533 12 Si 0.820 3.180 13 H -0.207 1.207 14 H -0.197 1.197 15 H -0.185 1.185 16 C 0.093 3.907 17 C -0.045 4.045 18 N -0.190 5.190 19 C -0.234 4.234 20 C 0.170 3.830 21 N -0.377 5.377 22 N -0.267 5.267 23 H 0.115 0.885 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.090 0.910 28 H 0.129 0.871 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.244 0.756 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.030 -12.396 1.518 12.851 hybrid contribution 1.536 1.533 0.050 2.171 sum -1.494 -10.863 1.568 11.077 Atomic orbital electron populations 1.20794 0.86471 1.04000 1.04471 1.21150 0.97746 0.86219 0.90842 1.21997 0.92995 1.00057 1.10213 1.20049 0.93918 0.93319 0.96383 1.18486 0.86836 0.84962 0.83047 1.90595 1.30387 1.83553 1.45265 1.43669 1.25415 1.11819 1.34476 1.19846 1.05576 0.86749 1.33816 0.88967 1.26026 0.96723 1.02183 0.94797 1.69718 1.18850 1.32079 1.32666 0.84908 0.78481 0.76404 0.78169 1.20712 1.19722 1.18492 1.19440 0.77429 0.99049 0.94831 1.29199 0.93001 0.90423 0.91827 1.80901 1.14736 1.12786 1.10583 1.21377 1.01251 0.90319 1.10485 1.18244 0.88118 0.87034 0.89593 1.42071 1.10017 1.03323 1.82306 1.66953 1.07847 1.29787 1.22068 0.88525 0.90688 0.89101 0.85987 0.91007 0.87142 0.83979 0.84208 0.75590 0.74758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.31 10.16 71.24 0.72 -1.58 16 2 C 0.18 5.39 6.77 42.48 0.29 5.68 16 3 C -0.23 -8.19 7.26 22.65 0.16 -8.02 16 4 C -0.03 -1.01 5.01 -19.91 -0.10 -1.11 16 5 C 0.48 23.02 7.30 86.83 0.63 23.66 16 6 O -0.61 -33.71 16.57 -3.94 -0.07 -33.78 16 7 N -0.44 -21.19 2.61 -648.53 -1.69 -22.88 16 8 C -0.33 -17.45 9.47 84.13 0.80 -16.65 16 9 H 0.09 5.13 7.19 -2.91 -0.02 5.11 16 10 C 0.00 0.18 5.36 84.98 0.46 0.63 16 11 N -0.89 -42.94 7.93 21.69 0.17 -42.77 16 12 Si 1.00 40.32 29.55 68.60 2.03 42.35 16 13 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 14 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 15 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 16 C 0.22 9.10 4.77 84.57 0.40 9.50 16 17 C 0.27 12.12 10.46 89.44 0.94 13.06 16 18 N -0.51 -23.86 18.54 20.01 0.37 -23.49 16 19 C -0.21 -6.93 9.62 22.80 0.22 -6.71 16 20 C 0.41 11.45 7.74 133.04 1.03 12.48 16 21 N -0.83 -15.15 9.07 -55.49 -0.50 -15.65 16 22 N -0.55 -16.00 10.28 -181.50 -1.87 -17.87 16 23 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.07 1.75 8.07 -2.38 -0.02 1.73 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.12 4.70 4.55 -2.91 -0.01 4.68 16 27 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 28 H 0.11 3.91 5.44 -2.39 -0.01 3.90 16 29 H 0.14 6.04 6.20 -2.39 -0.01 6.02 16 30 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.41 5.97 8.95 -92.71 -0.83 5.14 16 32 H 0.42 5.69 8.82 -92.71 -0.82 4.87 16 Total: -1.00 -65.31 281.66 3.55 -61.76 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.44 Total: 21.40 kcal Atomic # 6 Polarization: 25.38 SS G_CDS: 5.55 Total: 30.93 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -3.52 Total: -122.66 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.07 Total: -33.78 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -65.31 3.55 -61.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228462064.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.418 kcal (2) G-P(sol) polarization free energy of solvation -65.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds