Wall clock time and date at job start Mon Mar 30 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47134 * 270.00474 * 3 2 1 5 5 H 1.48498 * 109.47022 * 30.00578 * 3 2 1 6 6 H 1.48497 * 109.46913 * 150.00522 * 3 2 1 7 7 C 1.37878 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47179 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46977 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99816 * 180.02562 * 11 10 9 13 13 O 1.21552 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.47860 * 120.00043 * 180.02562 * 12 11 10 15 15 C 1.39615 * 120.04286 * 0.02562 * 14 12 11 16 16 C 1.37923 * 119.69393 * 179.97438 * 15 14 12 17 17 C 1.38344 * 120.34953 * 0.02562 * 16 15 14 18 18 C 1.38717 * 120.70449 * 359.67798 * 17 16 15 19 19 C 1.39188 * 120.04431 * 180.02562 * 14 12 11 20 20 N 1.39642 * 111.63718 * 180.36895 * 18 17 16 21 21 C 1.46517 * 110.08788 * 0.27062 * 20 18 17 22 22 C 1.51274 * 130.79611 * 179.97438 * 17 16 15 23 23 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47127 * 60.00135 * 9 7 2 25 25 H 1.08998 * 109.46897 * 300.00469 * 9 7 2 26 26 H 1.08998 * 109.47244 * 59.99884 * 10 9 7 27 27 H 1.09007 * 109.46742 * 299.99932 * 10 9 7 28 28 H 0.97000 * 119.99978 * 0.02562 * 11 10 9 29 29 H 1.07996 * 120.15070 * 359.96067 * 15 14 12 30 30 H 1.07995 * 119.82265 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.91679 * 0.02562 * 19 14 12 32 32 H 0.96997 * 124.95719 * 180.29891 * 20 18 17 33 33 H 1.08999 * 110.29120 * 118.93828 * 21 20 18 34 34 H 1.09001 * 110.29816 * 240.96557 * 21 20 18 35 35 H 1.08994 * 110.42190 * 298.77260 * 22 17 16 36 36 H 1.08999 * 110.41621 * 61.23772 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1867 -6.0981 -0.0007 13 8 3.4022 -6.0981 -0.0003 14 6 1.4474 -7.3786 -0.0019 15 6 0.0512 -7.3796 -0.0040 16 6 -0.6311 -8.5783 -0.0057 17 6 0.0606 -9.7764 -0.0047 18 6 1.4477 -9.7934 -0.0088 19 6 2.1424 -8.5845 -0.0010 20 7 1.9465 -11.0977 -0.0154 21 6 0.8411 -12.0593 -0.0224 22 6 -0.4370 -11.2049 -0.0056 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 0.5427 -4.9308 -0.0019 29 1 -0.4919 -6.4462 -0.0041 30 1 -1.7111 -8.5815 -0.0069 31 1 3.2224 -8.5838 0.0011 32 1 2.8876 -11.3328 -0.0149 33 1 0.8819 -12.6756 -0.9205 34 1 0.8801 -12.6868 0.8680 35 1 -1.0277 -11.4024 0.8889 36 1 -1.0249 -11.4022 -0.9020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228558492.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:34 Heat of formation + Delta-G solvation = -14.891730 kcal Electronic energy + Delta-G solvation = -18114.939907 eV Core-core repulsion = 15177.243571 eV Total energy + Delta-G solvation = -2937.696336 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54397 -39.03936 -36.08435 -34.86978 -32.83467 -32.12748 -30.28728 -29.02704 -28.80424 -25.05684 -23.28340 -22.41008 -21.85665 -20.94192 -19.87367 -17.95980 -16.52980 -16.40837 -15.84912 -15.74473 -15.37681 -14.83140 -14.51087 -14.16596 -13.73358 -13.66167 -13.18948 -12.99643 -12.49870 -12.40769 -12.33017 -12.25518 -11.83921 -11.18167 -11.06274 -11.02107 -10.62419 -10.33895 -10.24264 -9.81801 -9.46385 -9.19633 -8.85780 -8.50450 -8.31485 -7.51003 -6.07546 -4.10189 0.95057 1.49150 3.12752 3.13743 3.31088 3.37062 3.41307 3.76185 4.00368 4.37719 4.40908 4.43916 4.78218 4.89775 5.08775 5.16915 5.27212 5.29535 5.31933 5.45163 5.59450 5.65176 5.86022 6.19495 6.33210 6.37839 6.39672 6.40941 6.54822 6.76481 6.93368 7.03298 7.54195 7.59999 7.64079 7.90869 8.04715 8.29954 8.67038 8.95761 9.54491 11.04113 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.054928 B = 0.003232 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.633162 B = 8661.739868 C = 9140.190964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.714 5.714 12 C 0.548 3.452 13 O -0.548 6.548 14 C -0.081 4.081 15 C -0.137 4.137 16 C -0.068 4.068 17 C -0.158 4.158 18 C 0.184 3.816 19 C -0.123 4.123 20 N -0.749 5.749 21 C 0.120 3.880 22 C -0.085 4.085 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.398 0.602 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.412 0.588 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 -23.581 -0.025 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.364 5.364 12 C 0.334 3.666 13 O -0.428 6.428 14 C -0.085 4.085 15 C -0.158 4.158 16 C -0.087 4.087 17 C -0.163 4.163 18 C 0.082 3.918 19 C -0.146 4.146 20 N -0.383 5.383 21 C -0.005 4.005 22 C -0.122 4.122 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.233 0.767 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.250 0.750 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.356 -23.575 -0.021 23.693 hybrid contribution 0.326 0.841 -0.011 0.902 sum -2.030 -22.734 -0.033 22.824 Atomic orbital electron populations 1.69960 1.06076 1.26850 1.50433 1.24998 0.94899 0.99399 0.95010 0.86509 0.79840 0.83003 0.78187 1.20566 1.21176 1.19734 1.21056 0.93264 0.90378 1.51277 0.92227 1.19333 0.94223 0.91088 0.97911 1.21761 0.96097 0.81323 1.00931 1.46266 1.10642 1.06386 1.73137 1.18287 0.87258 0.83892 0.77153 1.90728 1.13565 1.87774 1.50733 1.19693 0.93577 0.93100 1.02147 1.21072 0.92913 0.98241 1.03529 1.20244 0.99584 0.90277 0.98595 1.20038 0.92850 0.94914 1.08515 1.18189 0.92564 0.85834 0.95248 1.20372 1.00259 0.88858 1.05141 1.44678 1.07764 1.02334 1.83505 1.21742 0.85818 0.91766 1.01165 1.21052 0.97165 0.90796 1.03191 0.92856 0.95868 0.95864 0.92392 0.92409 0.76706 0.85210 0.85633 0.85157 0.75020 0.91612 0.91760 0.89633 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.65 5.61 -4.04 -0.02 2.62 16 11 N -0.71 -13.21 5.51 -61.24 -0.34 -13.55 16 12 C 0.55 10.21 7.77 -12.32 -0.10 10.12 16 13 O -0.55 -12.03 16.33 5.32 0.09 -11.94 16 14 C -0.08 -1.24 5.86 -105.09 -0.62 -1.86 16 15 C -0.14 -1.74 9.54 -39.18 -0.37 -2.11 16 16 C -0.07 -0.74 10.02 -39.66 -0.40 -1.14 16 17 C -0.16 -1.71 6.23 -104.12 -0.65 -2.36 16 18 C 0.18 2.20 7.02 -83.68 -0.59 1.61 16 19 C -0.12 -1.75 9.62 -38.78 -0.37 -2.12 16 20 N -0.75 -6.78 6.53 -58.15 -0.38 -7.16 16 21 C 0.12 0.80 7.96 -3.65 -0.03 0.77 16 22 C -0.08 -0.62 6.94 -27.22 -0.19 -0.81 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 28 H 0.40 6.37 6.50 -40.82 -0.27 6.11 16 29 H 0.13 1.46 6.40 -52.49 -0.34 1.13 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.89 7.63 -52.49 -0.40 1.49 16 32 H 0.41 3.04 8.96 -40.82 -0.37 2.67 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 307.48 15.07 4.63 4.63 Total: -1.00 -32.91 307.48 -8.88 -41.79 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.71 Total: 3.69 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.89 Total: -8.46 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.02 Total: -46.21 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.91 -8.88 -41.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228558492.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.900 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds