Wall clock time and date at job start Mon Mar 30 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47134 * 270.00474 * 3 2 1 5 5 H 1.48498 * 109.47022 * 30.00578 * 3 2 1 6 6 H 1.48497 * 109.46913 * 150.00522 * 3 2 1 7 7 C 1.37878 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47179 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46977 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99816 * 180.02562 * 11 10 9 13 13 O 1.21552 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.47860 * 120.00043 * 180.02562 * 12 11 10 15 15 C 1.39615 * 120.04286 * 0.02562 * 14 12 11 16 16 C 1.37923 * 119.69393 * 179.97438 * 15 14 12 17 17 C 1.38344 * 120.34953 * 0.02562 * 16 15 14 18 18 C 1.38717 * 120.70449 * 359.67798 * 17 16 15 19 19 C 1.39188 * 120.04431 * 180.02562 * 14 12 11 20 20 N 1.39642 * 111.63718 * 180.36895 * 18 17 16 21 21 C 1.46517 * 110.08788 * 0.27062 * 20 18 17 22 22 C 1.51274 * 130.79611 * 179.97438 * 17 16 15 23 23 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47127 * 60.00135 * 9 7 2 25 25 H 1.08998 * 109.46897 * 300.00469 * 9 7 2 26 26 H 1.08998 * 109.47244 * 59.99884 * 10 9 7 27 27 H 1.09007 * 109.46742 * 299.99932 * 10 9 7 28 28 H 0.97000 * 119.99978 * 0.02562 * 11 10 9 29 29 H 1.07996 * 120.15070 * 359.96067 * 15 14 12 30 30 H 1.07995 * 119.82265 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.91679 * 0.02562 * 19 14 12 32 32 H 0.96997 * 124.95719 * 180.29891 * 20 18 17 33 33 H 1.08999 * 110.29120 * 118.93828 * 21 20 18 34 34 H 1.09001 * 110.29816 * 240.96557 * 21 20 18 35 35 H 1.08994 * 110.42190 * 298.77260 * 22 17 16 36 36 H 1.08999 * 110.41621 * 61.23772 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1867 -6.0981 -0.0007 13 8 3.4022 -6.0981 -0.0003 14 6 1.4474 -7.3786 -0.0019 15 6 0.0512 -7.3796 -0.0040 16 6 -0.6311 -8.5783 -0.0057 17 6 0.0606 -9.7764 -0.0047 18 6 1.4477 -9.7934 -0.0088 19 6 2.1424 -8.5845 -0.0010 20 7 1.9465 -11.0977 -0.0154 21 6 0.8411 -12.0593 -0.0224 22 6 -0.4370 -11.2049 -0.0056 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 0.5427 -4.9308 -0.0019 29 1 -0.4919 -6.4462 -0.0041 30 1 -1.7111 -8.5815 -0.0069 31 1 3.2224 -8.5838 0.0011 32 1 2.8876 -11.3328 -0.0149 33 1 0.8819 -12.6756 -0.9205 34 1 0.8801 -12.6868 0.8680 35 1 -1.0277 -11.4024 0.8889 36 1 -1.0249 -11.4022 -0.9020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228558492.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:34 Heat of formation + Delta-G solvation = -37.356916 kcal Electronic energy + Delta-G solvation = -18115.914071 eV Core-core repulsion = 15177.243571 eV Total energy + Delta-G solvation = -2938.670499 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52368 -40.36824 -37.02132 -36.64974 -34.83923 -32.97649 -31.89090 -30.15469 -29.75103 -26.88713 -24.51171 -23.39917 -22.82315 -22.54203 -21.18995 -19.09404 -18.47534 -17.58161 -16.87284 -16.64600 -16.55968 -16.46237 -16.32553 -15.43169 -14.90842 -14.77998 -14.59216 -14.33685 -14.11775 -13.42785 -13.25122 -13.01935 -12.94389 -12.91658 -12.57835 -12.53216 -12.25641 -12.03221 -11.68343 -11.46946 -11.09091 -10.97172 -10.60373 -10.12457 -9.74249 -8.30469 -8.23860 -6.34345 -0.11529 0.55908 1.42140 1.42770 1.54278 1.86466 2.12892 2.42156 2.59167 2.91048 3.10775 3.62271 3.75730 3.85826 4.12358 4.29248 4.33401 4.43079 4.46671 4.47153 4.54164 4.78780 4.83046 4.92807 5.05086 5.13902 5.22807 5.30662 5.42752 5.48093 5.50050 5.57276 5.66614 5.78465 6.15704 6.19079 6.57561 6.78313 6.90270 7.18733 7.34769 8.88115 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.054928 B = 0.003232 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.633162 B = 8661.739868 C = 9140.190964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.709 5.709 12 C 0.548 3.452 13 O -0.590 6.590 14 C -0.104 4.104 15 C -0.141 4.141 16 C -0.065 4.065 17 C -0.155 4.155 18 C 0.178 3.822 19 C -0.143 4.143 20 N -0.747 5.747 21 C 0.114 3.886 22 C -0.083 4.083 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.411 0.589 29 H 0.140 0.860 30 H 0.159 0.841 31 H 0.114 0.886 32 H 0.418 0.582 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.297 -25.238 -0.041 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.016 3.984 11 N -0.360 5.360 12 C 0.336 3.664 13 O -0.472 6.472 14 C -0.108 4.108 15 C -0.162 4.162 16 C -0.083 4.083 17 C -0.160 4.160 18 C 0.074 3.926 19 C -0.167 4.167 20 N -0.381 5.381 21 C -0.010 4.010 22 C -0.120 4.120 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.248 0.752 29 H 0.157 0.843 30 H 0.176 0.824 31 H 0.132 0.868 32 H 0.256 0.744 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.640 -25.277 -0.040 25.537 hybrid contribution 0.673 1.208 -0.007 1.383 sum -2.967 -24.069 -0.046 24.251 Atomic orbital electron populations 1.70060 1.07501 1.28035 1.50911 1.25872 0.95825 1.03071 0.94364 0.85434 0.78596 0.78414 0.78535 1.19732 1.20395 1.19153 1.21459 0.93588 0.91905 1.51684 0.92341 1.19137 0.94182 0.91581 0.96529 1.21296 0.95192 0.81967 0.99975 1.46058 1.11180 1.05414 1.73308 1.18857 0.86951 0.84853 0.75689 1.90690 1.15453 1.88417 1.52663 1.19430 0.94562 0.91341 1.05478 1.21228 0.91748 0.99776 1.03417 1.20586 1.01163 0.89442 0.97132 1.20567 0.92396 0.96848 1.06171 1.18310 0.93317 0.86161 0.94837 1.20309 0.99670 0.89862 1.06898 1.44889 1.08929 1.01689 1.82566 1.22014 0.84545 0.91418 1.02975 1.21215 0.97767 0.88043 1.05009 0.92483 0.97116 0.97118 0.93388 0.93381 0.75209 0.84264 0.82385 0.86814 0.74392 0.89816 0.89967 0.87750 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.29 21.45 0.28 -54.33 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.20 5.09 29.85 0.15 1.35 16 10 C 0.14 6.31 5.61 86.38 0.48 6.79 16 11 N -0.71 -27.05 5.51 -465.95 -2.57 -29.62 16 12 C 0.55 21.26 7.77 86.79 0.67 21.94 16 13 O -0.59 -27.24 16.33 -3.88 -0.06 -27.30 16 14 C -0.10 -3.26 5.86 -20.17 -0.12 -3.37 16 15 C -0.14 -3.45 9.54 22.53 0.22 -3.24 16 16 C -0.06 -1.24 10.02 22.22 0.22 -1.02 16 17 C -0.15 -2.92 6.23 -19.54 -0.12 -3.04 16 18 C 0.18 4.03 7.02 38.30 0.27 4.30 16 19 C -0.14 -4.18 9.62 22.79 0.22 -3.96 16 20 N -0.75 -12.06 6.53 -337.89 -2.21 -14.27 16 21 C 0.11 1.11 7.96 86.63 0.69 1.80 16 22 C -0.08 -0.88 6.94 30.28 0.21 -0.67 16 23 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 24 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.41 13.40 6.50 -92.71 -0.60 12.80 16 29 H 0.14 3.02 6.40 -2.91 -0.02 3.00 16 30 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.11 3.56 7.63 -2.91 -0.02 3.54 16 32 H 0.42 5.62 8.96 -92.71 -0.83 4.79 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -71.97 307.48 0.74 -71.23 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.33 Total: 17.33 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 3.59 Total: -9.15 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -4.49 Total: -98.22 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.06 Total: -27.30 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -71.97 0.74 -71.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228558492.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.872 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds